Wall clock time and date at job start Tue Mar 31 2020 06:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99969 * 2 1 4 4 H 1.48498 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47269 * 300.00143 * 3 2 1 6 6 H 1.48498 * 109.47193 * 60.00324 * 3 2 1 7 7 C 1.37875 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47395 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47330 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46635 * 305.00155 * 11 10 9 13 13 N 1.46902 * 109.47033 * 64.99720 * 11 10 9 14 14 C 1.50690 * 109.47278 * 185.00229 * 11 10 9 15 15 N 1.31126 * 126.55526 * 104.97972 * 14 11 10 16 16 C 1.34492 * 105.61910 * 180.02562 * 15 14 11 17 17 C 1.50703 * 126.28978 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47198 * 270.00419 * 17 16 15 19 19 C 1.33387 * 125.20518 * 89.71851 * 18 17 16 20 20 C 1.38427 * 114.92135 * 179.86054 * 19 18 17 21 21 C 1.33390 * 114.91912 * 0.42564 * 20 19 18 22 22 S 1.75881 * 109.59608 * 359.77599 * 21 20 19 23 23 N 1.29948 * 107.42516 * 0.02562 * 16 15 14 24 24 O 1.21303 * 110.24669 * 359.97438 * 23 16 15 25 25 H 0.97000 * 119.99706 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47399 * 59.99392 * 9 7 2 27 27 H 1.08999 * 109.46688 * 299.99812 * 9 7 2 28 28 H 1.09006 * 109.46776 * 59.99898 * 10 9 7 29 29 H 1.09001 * 109.47270 * 300.00297 * 10 9 7 30 30 H 1.00903 * 110.99611 * 60.00329 * 13 11 10 31 31 H 1.00897 * 110.99710 * 183.95431 * 13 11 10 32 32 H 1.08998 * 109.47127 * 30.00470 * 17 16 15 33 33 H 1.09003 * 109.47308 * 150.00238 * 17 16 15 34 34 H 1.07999 * 122.53688 * 0.02562 * 19 18 17 35 35 H 1.08001 * 122.54154 * 180.20256 * 20 19 18 36 36 H 1.07997 * 125.19861 * 179.78749 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 1 0.7884 -5.0067 0.8433 13 7 0.7280 -5.1188 -1.2537 14 6 2.4548 -6.1297 0.1251 15 7 2.6768 -6.8544 1.1951 16 6 3.6188 -7.7461 0.8396 17 6 4.2188 -8.8096 1.7228 18 6 5.4324 -8.2552 2.4232 19 6 5.4224 -7.6359 3.6046 20 6 6.6624 -7.2137 4.0523 21 6 7.6780 -7.4822 3.2303 22 16 7.0776 -8.3189 1.8045 23 7 3.9166 -7.5221 -0.4053 24 8 3.2588 -6.5976 -0.8345 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5566 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8719 -3.6043 -0.8894 30 1 1.3476 -5.1034 -2.0500 31 1 0.1637 -5.9552 -1.2509 32 1 3.4836 -9.1240 2.4636 33 1 4.5100 -9.6657 1.1140 34 1 4.5160 -7.4784 4.1702 35 1 6.7968 -6.7023 4.9940 36 1 8.7111 -7.2254 3.4126 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424333308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:48 Heat of formation + Delta-G solvation = 66.631784 kcal Electronic energy + Delta-G solvation = -20163.693826 eV Core-core repulsion = 16969.495191 eV Total energy + Delta-G solvation = -3194.198635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.70626 -39.03852 -38.12775 -37.09159 -35.15649 -33.90173 -32.25201 -31.86871 -28.24278 -28.22060 -25.79741 -24.98663 -24.05510 -22.78735 -21.49468 -20.18288 -19.23586 -18.85593 -18.32712 -17.92562 -17.27178 -16.72510 -16.46165 -16.24956 -15.60343 -15.50168 -14.50660 -14.31129 -14.19547 -14.07106 -13.81303 -13.57926 -13.53210 -13.34192 -12.83193 -12.77460 -12.64135 -12.46777 -12.33068 -12.14666 -11.77290 -11.72303 -11.54839 -11.21701 -10.89591 -10.48720 -10.00509 -9.76043 -9.48887 -8.12809 -6.22201 -0.14192 0.03274 0.59176 0.98345 1.09376 1.42699 1.43696 1.55670 1.66535 1.74222 2.44973 2.55332 2.93321 3.20871 3.52483 3.65970 3.76326 4.00666 4.14800 4.19587 4.28347 4.42316 4.52354 4.64526 4.72096 4.76547 4.84678 4.94870 5.11611 5.22304 5.27675 5.47795 5.59240 5.84379 5.99343 6.00269 6.31648 6.47627 6.95842 7.01876 7.45757 8.98589 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016742 B = 0.003474 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.044710 B = 8058.758864 C = 9169.067032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.040 3.960 10 C -0.089 4.089 11 C 0.201 3.799 12 H 0.125 0.875 13 N -0.818 5.818 14 C 0.164 3.836 15 N -0.490 5.490 16 C 0.172 3.828 17 C 0.048 3.952 18 C -0.199 4.199 19 C -0.125 4.125 20 C -0.147 4.147 21 C -0.207 4.207 22 S 0.088 5.912 23 N -0.399 5.399 24 O 0.069 5.931 25 H 0.262 0.738 26 H 0.019 0.981 27 H -0.007 1.007 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.356 0.644 31 H 0.357 0.643 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.173 -19.981 4.876 23.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.128 4.128 11 C 0.086 3.914 12 H 0.143 0.857 13 N -0.349 5.349 14 C -0.060 4.060 15 N -0.224 5.224 16 C -0.102 4.102 17 C 0.008 3.992 18 C -0.318 4.318 19 C -0.156 4.156 20 C -0.177 4.177 21 C -0.343 4.343 22 S 0.352 5.648 23 N -0.109 5.109 24 O 0.014 5.986 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.011 0.989 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.170 0.830 31 H 0.172 0.828 32 H 0.151 0.849 33 H 0.134 0.866 34 H 0.168 0.832 35 H 0.179 0.821 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 11.890 -20.365 3.722 23.874 hybrid contribution 0.083 0.897 1.066 1.395 sum 11.973 -19.468 4.788 23.351 Atomic orbital electron populations 1.70094 1.07487 1.27446 1.51739 1.25837 0.95679 1.02821 0.95012 0.85530 0.79023 0.79528 0.77741 1.19047 1.20394 1.20520 1.21730 0.93312 0.92749 1.50338 0.92816 1.18824 0.93771 0.90842 0.96311 1.21541 0.98166 0.91999 1.01077 1.20415 0.88974 0.85763 0.96282 0.85748 1.58771 1.27200 1.46277 1.02664 1.30978 0.94054 0.98368 0.82578 1.71908 1.16787 1.07217 1.26535 1.26155 0.94440 0.99129 0.90441 1.18486 0.93056 0.91557 0.96147 1.24205 0.97476 1.09909 1.00167 1.20484 0.99995 0.98981 0.96096 1.20481 0.91428 1.03222 1.02587 1.26021 1.04697 1.06291 0.97241 1.84388 0.99857 1.57729 1.22858 1.74587 1.16204 1.05529 1.14551 1.85244 1.39227 1.35016 1.39122 0.92895 0.96290 0.98858 0.92912 0.92174 0.82955 0.82804 0.84878 0.86554 0.83196 0.82099 0.79485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.54 -30.46 9.11 25.60 0.23 -30.23 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.04 2.00 4.86 29.85 0.15 2.15 16 10 C -0.09 -3.48 4.78 30.59 0.15 -3.33 16 11 C 0.20 6.25 3.29 44.17 0.15 6.40 16 12 H 0.12 3.90 8.14 -2.38 -0.02 3.88 16 13 N -0.82 -22.55 8.68 -171.81 -1.49 -24.04 16 14 C 0.16 4.90 7.31 88.38 0.65 5.54 16 15 N -0.49 -14.74 11.55 -303.21 -3.50 -18.25 16 16 C 0.17 4.69 7.45 138.46 1.03 5.72 16 17 C 0.05 0.94 6.34 29.10 0.18 1.13 16 18 C -0.20 -4.23 5.75 24.59 0.14 -4.09 16 19 C -0.12 -2.55 10.05 21.22 0.21 -2.33 16 20 C -0.15 -2.69 10.18 21.22 0.22 -2.47 16 21 C -0.21 -3.63 11.23 66.72 0.75 -2.88 16 22 S 0.09 1.78 23.33 -56.49 -1.32 0.46 16 23 N -0.40 -11.87 12.16 -60.31 -0.73 -12.61 16 24 O 0.07 2.08 11.29 74.83 0.84 2.93 16 25 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 26 H 0.02 1.01 7.75 -2.39 -0.02 0.99 16 27 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.05 2.10 8.14 -2.38 -0.02 2.09 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.36 9.07 8.98 -89.69 -0.81 8.26 16 31 H 0.36 7.80 9.06 -89.70 -0.81 6.99 16 32 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 35 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 36 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -66.97 331.81 -0.07 -67.04 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -0.50 Total: 17.34 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 4.31 Total: -23.68 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -5.44 Total: -110.28 kcal Atomic # 8 Polarization: 2.08 SS G_CDS: 0.84 Total: 2.93 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -1.32 Total: 0.46 kcal Total: -66.97 -0.07 -67.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424333308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.676 kcal (2) G-P(sol) polarization free energy of solvation -66.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds