Wall clock time and date at job start Tue Mar 31 2020 06:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37946 * 120.06798 * 2 1 4 4 C 1.38380 * 120.18239 * 180.30108 * 3 2 1 5 5 C 1.38309 * 120.31422 * 359.44731 * 4 3 2 6 6 C 1.38111 * 120.13574 * 0.30086 * 5 4 3 7 7 Cl 1.73595 * 120.09508 * 180.02562 * 6 5 4 8 8 C 1.39589 * 120.07156 * 179.77320 * 2 1 3 9 9 C 1.47771 * 120.15155 * 359.95326 * 8 2 1 10 10 O 1.21560 * 119.99658 * 273.61209 * 9 8 2 11 11 N 1.34774 * 120.00036 * 93.61329 * 9 8 2 12 12 C 1.46502 * 119.99971 * 185.08777 * 11 9 8 13 13 C 1.52998 * 109.46885 * 184.40922 * 12 11 9 14 14 C 1.50697 * 115.55158 * 64.95929 * 13 12 11 15 15 H 1.08000 * 119.99875 * 266.29887 * 14 13 12 16 16 C 1.37875 * 120.00207 * 86.29262 * 14 13 12 17 17 N 1.31519 * 120.00283 * 181.75154 * 16 14 13 18 18 Si 1.86804 * 119.99967 * 1.75353 * 16 14 13 19 19 H 1.48500 * 109.47261 * 84.86429 * 18 16 14 20 20 H 1.48504 * 109.46868 * 204.86330 * 18 16 14 21 21 H 1.48498 * 109.47033 * 324.85785 * 18 16 14 22 22 C 1.52999 * 117.50269 * 279.28411 * 13 12 11 23 23 C 1.53002 * 117.49617 * 210.62204 * 13 12 11 24 24 H 1.08996 * 109.46748 * 270.22795 * 1 2 3 25 25 H 1.09003 * 109.47330 * 30.22947 * 1 2 3 26 26 H 1.08995 * 109.47043 * 150.22696 * 1 2 3 27 27 H 1.07999 * 119.90796 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.83851 * 179.72111 * 4 3 2 29 29 H 1.08007 * 119.93150 * 180.27594 * 5 4 3 30 30 H 0.96997 * 119.99997 * 5.08908 * 11 9 8 31 31 H 1.08995 * 109.47243 * 304.41435 * 12 11 9 32 32 H 1.09000 * 109.46855 * 64.41255 * 12 11 9 33 33 H 0.96999 * 120.00480 * 180.02562 * 17 16 14 34 34 H 1.09001 * 117.49779 * 0.02562 * 22 13 12 35 35 H 1.08997 * 117.50108 * 145.02141 * 22 13 12 36 36 H 1.09006 * 117.49951 * 214.98112 * 23 13 12 37 37 H 1.09001 * 117.50252 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1938 0.0000 4 6 3.5819 1.1966 -0.0063 5 6 4.2824 0.0040 -0.0011 6 6 3.6037 -1.1988 0.0041 7 17 4.4840 -2.6950 0.0113 8 6 2.2064 -1.2080 0.0048 9 6 1.4726 -2.4906 0.0109 10 8 1.1139 -2.9805 1.0640 11 7 1.2009 -3.1171 -1.1510 12 6 0.3782 -4.3293 -1.1547 13 6 0.3146 -4.8981 -2.5736 14 6 1.6232 -5.3907 -3.1357 15 1 2.2344 -4.7335 -3.7364 16 6 2.0403 -6.6803 -2.8829 17 7 3.1983 -7.0994 -3.3444 18 14 0.9604 -7.8325 -1.8848 19 1 -0.0339 -8.4779 -2.7792 20 1 1.8048 -8.8755 -1.2490 21 1 0.2521 -7.0599 -0.8329 22 6 -0.6762 -4.2577 -3.5478 23 6 -0.9552 -5.6504 -2.9768 24 1 -0.3633 0.0041 1.0276 25 1 -0.3634 0.8879 -0.5174 26 1 -0.3633 -0.8920 -0.5103 27 1 1.6577 2.1289 0.0004 28 1 4.1174 2.1345 -0.0108 29 1 5.3625 0.0135 -0.0015 30 1 1.5502 -2.7655 -1.9848 31 1 0.8181 -5.0690 -0.4860 32 1 -0.6287 -4.0860 -0.8154 33 1 3.4916 -8.0068 -3.1669 34 1 -1.2826 -3.4308 -3.1780 35 1 -0.3818 -4.1930 -4.5952 36 1 -0.8441 -6.5013 -3.6490 37 1 -1.7452 -5.7404 -2.2312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451597912.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:30 Heat of formation + Delta-G solvation = -19.895677 kcal Electronic energy + Delta-G solvation = -21169.519971 eV Core-core repulsion = 17937.232766 eV Total energy + Delta-G solvation = -3232.287205 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.38097 -39.67942 -38.61967 -37.57854 -35.06794 -34.22593 -33.78816 -32.10094 -28.70141 -28.05445 -27.13756 -24.47208 -23.35655 -22.76954 -21.40703 -21.00352 -19.01477 -18.20591 -17.26458 -17.24060 -17.02488 -16.75342 -15.93096 -15.52133 -15.25213 -14.90292 -14.78932 -14.60622 -14.37156 -14.22768 -13.81352 -13.75099 -13.47284 -13.11630 -12.68605 -12.65778 -12.44430 -12.30234 -12.19785 -12.01900 -11.99829 -11.63074 -11.13902 -11.00146 -10.66803 -10.36751 -9.98367 -9.92760 -9.69919 -8.30902 -6.36735 -0.05351 0.15227 1.05714 1.30716 1.36713 1.45290 1.48927 2.18173 2.34394 2.53901 3.04122 3.21559 3.64711 3.69742 3.93345 4.00462 4.23611 4.25609 4.34153 4.40157 4.42031 4.47911 4.60630 4.70088 4.79069 4.80538 4.86425 5.08268 5.12122 5.15649 5.27965 5.30041 5.39556 5.45223 5.50170 5.68079 5.78477 6.26894 6.54145 6.71704 7.14380 7.33471 8.83837 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018584 B = 0.005559 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.338177 B = 5036.093344 C = 5816.763139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.047 4.047 3 C -0.109 4.109 4 C -0.076 4.076 5 C -0.122 4.122 6 C -0.028 4.028 7 Cl -0.080 7.080 8 C -0.143 4.143 9 C 0.563 3.437 10 O -0.582 6.582 11 N -0.688 5.688 12 C 0.164 3.836 13 C -0.044 4.044 14 C -0.475 4.475 15 H 0.042 0.958 16 C 0.026 3.974 17 N -0.943 5.943 18 Si 0.928 3.072 19 H -0.258 1.258 20 H -0.306 1.306 21 H -0.247 1.247 22 C -0.148 4.148 23 C -0.191 4.191 24 H 0.079 0.921 25 H 0.109 0.891 26 H 0.050 0.950 27 H 0.174 0.826 28 H 0.178 0.822 29 H 0.155 0.845 30 H 0.408 0.592 31 H 0.033 0.967 32 H 0.064 0.936 33 H 0.263 0.737 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.962 19.977 5.307 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.048 4.048 3 C -0.127 4.127 4 C -0.094 4.094 5 C -0.140 4.140 6 C -0.055 4.055 7 Cl -0.051 7.051 8 C -0.147 4.147 9 C 0.349 3.651 10 O -0.463 6.463 11 N -0.336 5.336 12 C 0.040 3.960 13 C -0.045 4.045 14 C -0.513 4.513 15 H 0.061 0.939 16 C -0.172 4.172 17 N -0.583 5.583 18 Si 0.753 3.247 19 H -0.183 1.183 20 H -0.233 1.233 21 H -0.171 1.171 22 C -0.185 4.185 23 C -0.229 4.229 24 H 0.097 0.903 25 H 0.127 0.873 26 H 0.069 0.931 27 H 0.192 0.808 28 H 0.196 0.804 29 H 0.173 0.827 30 H 0.243 0.757 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.055 19.317 6.009 20.632 hybrid contribution 0.516 -1.659 -0.045 1.738 sum -3.539 17.658 5.964 18.971 Atomic orbital electron populations 1.20934 0.89188 1.04067 1.03421 1.20177 0.97326 0.90833 0.96432 1.21528 0.94642 0.97752 0.98781 1.21732 0.94230 0.98279 0.95174 1.21338 1.01790 0.89878 1.01037 1.21271 0.90960 0.88596 1.04696 1.98434 1.75916 1.33961 1.96776 1.19763 0.92322 0.94099 1.08543 1.18481 0.78542 0.84484 0.83607 1.90729 1.55329 1.67899 1.32309 1.45831 1.51774 1.26903 1.09056 1.20961 0.93077 0.85275 0.96676 1.19445 0.90408 1.02623 0.92050 1.20321 1.02926 0.97092 1.30957 0.93950 1.25695 0.95665 0.99825 0.95980 1.70020 1.21999 1.18369 1.47915 0.86081 0.79288 0.78844 0.80438 1.18311 1.23327 1.17071 1.22882 1.01945 0.94883 0.98780 1.23037 0.99398 0.96271 1.04188 0.90285 0.87270 0.93081 0.80846 0.80444 0.82747 0.75667 0.94848 0.91744 0.92805 0.87492 0.89565 0.90276 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 9.62 71.24 0.69 -1.67 16 2 C -0.05 -1.08 5.91 -19.61 -0.12 -1.19 16 3 C -0.11 -1.67 9.69 22.23 0.22 -1.45 16 4 C -0.08 -1.10 10.04 22.32 0.22 -0.88 16 5 C -0.12 -2.58 9.82 22.26 0.22 -2.36 16 6 C -0.03 -0.85 6.35 22.60 0.14 -0.70 16 7 Cl -0.08 -2.90 28.04 -2.72 -0.08 -2.97 16 8 C -0.14 -4.52 5.64 -20.07 -0.11 -4.63 16 9 C 0.56 21.89 4.77 86.77 0.41 22.31 16 10 O -0.58 -26.79 17.09 -3.90 -0.07 -26.86 16 11 N -0.69 -26.87 5.45 -466.05 -2.54 -29.41 16 12 C 0.16 6.92 5.22 86.38 0.45 7.37 16 13 C -0.04 -1.91 0.84 -52.93 -0.04 -1.95 16 14 C -0.48 -25.79 9.29 25.60 0.24 -25.56 16 15 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 16 C 0.03 1.52 5.47 84.65 0.46 1.98 16 17 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 18 Si 0.93 45.34 24.75 68.60 1.70 47.04 16 19 H -0.26 -11.77 7.03 99.48 0.70 -11.07 16 20 H -0.31 -15.38 7.11 99.48 0.71 -14.68 16 21 H -0.25 -11.49 5.99 99.48 0.60 -10.89 16 22 C -0.15 -5.18 9.96 30.62 0.30 -4.87 16 23 C -0.19 -7.30 7.60 30.62 0.23 -7.07 16 24 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.11 1.34 8.09 -2.39 -0.02 1.32 16 26 H 0.05 1.22 7.08 -2.39 -0.02 1.20 16 27 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 28 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 29 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 30 H 0.41 15.31 8.43 -92.71 -0.78 14.53 16 31 H 0.03 1.63 6.75 -2.39 -0.02 1.62 16 32 H 0.06 2.44 8.09 -2.39 -0.02 2.42 16 33 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 34 H 0.11 3.06 8.14 -2.39 -0.02 3.05 16 35 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.08 3.23 7.09 -2.38 -0.02 3.22 16 37 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -73.32 328.28 2.82 -70.50 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.19 Total: 20.86 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 3.32 Total: -20.68 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -2.24 Total: -87.89 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.07 Total: -26.86 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.70 Total: 47.04 kcal Atomic # 17 Polarization: -2.90 SS G_CDS: -0.08 Total: -2.97 kcal Total: -73.32 2.82 -70.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451597912.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.605 kcal (2) G-P(sol) polarization free energy of solvation -73.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds