Wall clock time and date at job start Tue Mar 31 2020 07:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47539 * 2 1 4 4 H 1.09003 * 115.55698 * 29.30608 * 3 2 1 5 5 C 1.52998 * 117.49889 * 243.62203 * 3 2 1 6 6 C 1.52997 * 60.00107 * 252.50807 * 5 3 2 7 7 H 1.08999 * 117.49930 * 107.50917 * 6 5 3 8 8 C 1.50700 * 117.50095 * 252.51261 * 6 5 3 9 9 O 1.21284 * 119.99731 * 68.60276 * 8 6 5 10 10 N 1.34774 * 119.99683 * 248.61146 * 8 6 5 11 11 C 1.39273 * 119.99568 * 185.32974 * 10 8 6 12 12 C 1.39462 * 119.83861 * 20.66503 * 11 10 8 13 13 C 1.36373 * 120.17761 * 180.02562 * 12 11 10 14 14 C 1.40893 * 119.85067 * 0.02562 * 13 12 11 15 15 C 1.41146 * 120.15756 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99923 * 152.71928 * 15 14 13 17 17 C 1.39907 * 120.00308 * 332.71541 * 15 14 13 18 18 N 1.30874 * 119.99818 * 159.45749 * 17 15 14 19 19 Si 1.86802 * 119.99703 * 339.45937 * 17 15 14 20 20 H 1.48506 * 109.46959 * 95.19089 * 19 17 15 21 21 H 1.48497 * 109.46691 * 215.18877 * 19 17 15 22 22 H 1.48498 * 109.47117 * 335.19085 * 19 17 15 23 23 C 1.40837 * 119.68408 * 359.97438 * 14 13 12 24 24 C 1.36483 * 119.81619 * 0.02562 * 23 14 13 25 25 Cl 1.73594 * 119.92538 * 179.97438 * 24 23 14 26 26 H 1.08999 * 109.46814 * 59.99693 * 1 2 3 27 27 H 1.08995 * 109.47303 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46847 * 300.00366 * 1 2 3 29 29 H 1.08998 * 109.46847 * 239.99634 * 2 1 3 30 30 H 1.09001 * 109.47088 * 119.99840 * 2 1 3 31 31 H 1.08999 * 117.49623 * 145.01396 * 5 3 2 32 32 H 1.09000 * 117.51525 * 359.97438 * 5 3 2 33 33 H 0.96994 * 120.00501 * 5.32802 * 10 8 6 34 34 H 1.07993 * 119.91416 * 359.97438 * 12 11 10 35 35 H 1.08005 * 120.07688 * 180.02562 * 13 12 11 36 36 H 0.97001 * 119.99390 * 180.02562 * 18 17 15 37 37 H 1.07997 * 120.09229 * 179.72266 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8441 1.9075 -1.2158 6 6 3.5503 1.6578 0.1183 7 1 4.1806 0.7720 0.1960 8 6 4.0230 2.8619 0.8914 9 8 3.2159 3.6168 1.3912 10 7 5.3425 3.0999 1.0273 11 6 5.7817 4.1475 1.8331 12 6 4.9399 4.6666 2.8165 13 6 5.3627 5.6927 3.6090 14 6 6.6534 6.2293 3.4325 15 6 7.0979 7.2910 4.2495 16 1 8.1526 7.4175 4.4442 17 6 6.1721 8.1795 4.8070 18 7 6.4993 8.8942 5.8534 19 14 4.4690 8.3456 4.0578 20 1 3.5204 7.4638 4.7845 21 1 4.0160 9.7557 4.1661 22 1 4.5166 7.9494 2.6275 23 6 7.4985 5.7005 2.4376 24 6 7.0618 4.6735 1.6519 25 17 8.1009 4.0200 0.4243 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.7214 2.9426 -1.5344 32 1 3.0102 1.1858 -2.0157 33 1 5.9863 2.5417 0.5640 34 1 3.9503 4.2554 2.9501 35 1 4.7096 6.0932 4.3703 36 1 5.8573 9.5100 6.2401 37 1 8.4875 6.1097 2.2936 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452642463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:05 Heat of formation + Delta-G solvation = -24.776313 kcal Electronic energy + Delta-G solvation = -20464.697839 eV Core-core repulsion = 17232.198994 eV Total energy + Delta-G solvation = -3232.498845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.61533 -39.76333 -38.04123 -37.44033 -36.15400 -35.03946 -32.95824 -31.62567 -31.51076 -27.46402 -25.19334 -24.53833 -23.83000 -22.76967 -21.39245 -20.93523 -19.57639 -18.94455 -18.07841 -17.21739 -16.37005 -16.13026 -16.08120 -15.83679 -15.26871 -15.22969 -14.78290 -14.60086 -14.39023 -14.17822 -13.53126 -13.43935 -13.30485 -12.97090 -12.84905 -12.63275 -12.48243 -12.29758 -12.18212 -11.91580 -11.86166 -11.71780 -11.38451 -11.19382 -11.00121 -10.93089 -10.52379 -9.62551 -9.03708 -8.99975 -6.49800 0.39791 0.61769 1.19114 1.21902 1.31954 1.41676 1.56023 2.05809 2.12633 2.45085 2.86078 3.34762 3.59723 3.74327 3.85565 4.08103 4.20980 4.29315 4.40411 4.50214 4.58428 4.70164 4.72799 4.79077 4.91968 4.95329 4.99341 5.09449 5.16921 5.24874 5.31354 5.33764 5.40271 5.51372 5.66935 5.79023 5.99597 6.23802 6.53433 6.56279 6.70074 7.21928 8.05526 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.004501 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.680814 B = 6218.692437 C = 7586.236983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.120 4.120 4 H 0.090 0.910 5 C -0.133 4.133 6 C -0.192 4.192 7 H 0.154 0.846 8 C 0.526 3.474 9 O -0.570 6.570 10 N -0.639 5.639 11 C 0.023 3.977 12 C -0.083 4.083 13 C -0.236 4.236 14 C 0.076 3.924 15 C -0.467 4.467 16 H 0.071 0.929 17 C 0.059 3.941 18 N -0.829 5.829 19 Si 0.956 3.044 20 H -0.263 1.263 21 H -0.270 1.270 22 H -0.262 1.262 23 C -0.195 4.195 24 C -0.008 4.008 25 Cl -0.071 7.071 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.417 0.583 34 H 0.136 0.864 35 H 0.102 0.898 36 H 0.298 0.702 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 -16.155 -13.221 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 C -0.139 4.139 4 H 0.109 0.891 5 C -0.171 4.171 6 C -0.213 4.213 7 H 0.171 0.829 8 C 0.316 3.684 9 O -0.450 6.450 10 N -0.283 5.283 11 C -0.072 4.072 12 C -0.103 4.103 13 C -0.256 4.256 14 C 0.073 3.927 15 C -0.495 4.495 16 H 0.089 0.911 17 C -0.159 4.159 18 N -0.454 5.454 19 Si 0.780 3.220 20 H -0.189 1.189 21 H -0.196 1.196 22 H -0.186 1.186 23 C -0.215 4.215 24 C -0.037 4.037 25 Cl -0.042 7.042 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.255 0.745 34 H 0.154 0.846 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.341 -15.520 -12.773 21.399 hybrid contribution 0.168 0.523 0.139 0.566 sum -7.173 -14.997 -12.634 20.881 Atomic orbital electron populations 1.21750 0.95060 1.02289 1.01713 1.21160 0.96350 0.91897 1.03182 1.22514 0.90366 0.99709 1.01341 0.89130 1.23230 1.00198 1.03344 0.90299 1.22318 0.98699 0.97534 1.02761 0.82862 1.20527 0.81337 0.86496 0.80031 1.90591 1.54920 1.49620 1.49910 1.42939 1.07904 1.30894 1.46539 1.17000 0.93825 0.97738 0.98683 1.20896 0.99678 0.96559 0.93124 1.20882 0.98424 1.01884 1.04360 1.17736 0.91567 0.92726 0.90718 1.19429 0.95871 1.09843 1.24368 0.91069 1.26665 1.03081 0.93563 0.92560 1.69721 1.39167 1.20262 1.16245 0.85643 0.78047 0.77434 0.80869 1.18901 1.19612 1.18644 1.20640 1.01896 1.00390 0.98572 1.20171 0.91093 0.97810 0.94599 1.98275 1.66578 1.85456 1.53874 0.92388 0.91269 0.93700 0.89533 0.91287 0.89735 0.84413 0.74477 0.84616 0.87989 0.89140 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.87 71.98 0.71 -1.28 16 2 C -0.09 -1.20 6.22 30.59 0.19 -1.01 16 3 C -0.12 -2.35 5.25 -10.79 -0.06 -2.40 16 4 H 0.09 2.30 7.60 -2.39 -0.02 2.28 16 5 C -0.13 -2.26 9.88 30.59 0.30 -1.96 16 6 C -0.19 -3.99 5.91 -11.54 -0.07 -4.06 16 7 H 0.15 2.22 8.14 -2.39 -0.02 2.20 16 8 C 0.53 16.79 7.45 87.66 0.65 17.44 16 9 O -0.57 -23.21 13.15 -3.04 -0.04 -23.25 16 10 N -0.64 -20.59 5.21 -303.03 -1.58 -22.17 16 11 C 0.02 0.93 6.50 38.58 0.25 1.18 16 12 C -0.08 -3.81 8.69 22.13 0.19 -3.62 16 13 C -0.24 -11.73 7.19 22.48 0.16 -11.56 16 14 C 0.08 3.88 5.15 -21.28 -0.11 3.77 16 15 C -0.47 -25.55 9.55 23.39 0.22 -25.33 16 16 H 0.07 4.09 8.06 -2.91 -0.02 4.07 16 17 C 0.06 3.12 5.38 85.24 0.46 3.58 16 18 N -0.83 -44.29 13.93 21.82 0.30 -43.99 16 19 Si 0.96 43.93 24.52 68.60 1.68 45.62 16 20 H -0.26 -11.80 6.64 99.48 0.66 -11.14 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.26 -12.75 6.93 99.48 0.69 -12.06 16 23 C -0.19 -8.87 9.50 22.50 0.21 -8.66 16 24 C -0.01 -0.32 6.30 22.18 0.14 -0.18 16 25 Cl -0.07 -2.20 27.68 -2.72 -0.08 -2.27 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 0.82 7.88 -2.39 -0.02 0.80 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.14 1.41 8.03 -2.39 -0.02 1.39 16 33 H 0.42 10.66 7.62 -92.71 -0.71 9.95 16 34 H 0.14 6.31 5.45 -2.91 -0.02 6.29 16 35 H 0.10 5.11 4.54 -2.91 -0.01 5.10 16 36 H 0.30 14.27 8.30 -92.71 -0.77 13.50 16 37 H 0.12 5.32 8.06 -2.91 -0.02 5.30 16 Total: -1.00 -62.38 322.39 3.88 -58.49 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.33 Total: 21.67 kcal Atomic # 6 Polarization: -37.36 SS G_CDS: 3.26 Total: -34.09 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -1.28 Total: -66.16 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.04 Total: -23.25 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.68 Total: 45.62 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -0.08 Total: -2.27 kcal Total: -62.38 3.88 -58.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452642463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.714 kcal (2) G-P(sol) polarization free energy of solvation -62.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds