Wall clock time and date at job start Tue Mar 31 2020 06:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 115.56387 * 2 1 4 4 C 1.53004 * 117.49755 * 214.30786 * 2 1 3 5 5 C 1.52993 * 60.00358 * 252.51510 * 4 2 1 6 6 H 1.08999 * 117.50183 * 107.51087 * 5 4 2 7 7 C 1.50703 * 117.49995 * 252.51466 * 5 4 2 8 8 O 1.21284 * 119.99973 * 68.60508 * 7 5 4 9 9 N 1.34779 * 119.99863 * 248.61288 * 7 5 4 10 10 C 1.39260 * 119.99848 * 185.56533 * 9 7 5 11 11 C 1.39473 * 119.83979 * 24.90634 * 10 9 7 12 12 C 1.36378 * 120.17642 * 179.97438 * 11 10 9 13 13 C 1.40885 * 119.85254 * 0.02562 * 12 11 10 14 14 C 1.41153 * 120.15921 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99925 * 34.91639 * 14 13 12 16 16 C 1.39896 * 120.00063 * 214.91205 * 14 13 12 17 17 N 1.30875 * 120.00069 * 355.19001 * 16 14 13 18 18 Si 1.86801 * 120.00024 * 175.18782 * 16 14 13 19 19 H 1.48495 * 109.47097 * 90.00233 * 18 16 14 20 20 H 1.48499 * 109.47067 * 210.00172 * 18 16 14 21 21 H 1.48506 * 109.47061 * 329.99958 * 18 16 14 22 22 C 1.40844 * 119.68317 * 359.73059 * 13 12 11 23 23 C 1.36475 * 119.81981 * 0.54112 * 22 13 12 24 24 Cl 1.73598 * 119.93054 * 179.72888 * 23 22 13 25 25 H 1.09004 * 109.47320 * 274.31202 * 1 2 3 26 26 H 1.09000 * 109.47036 * 34.31185 * 1 2 3 27 27 H 1.08997 * 109.47194 * 154.30907 * 1 2 3 28 28 H 1.09006 * 109.47216 * 205.68585 * 3 2 1 29 29 H 1.08998 * 109.47274 * 325.69312 * 3 2 1 30 30 H 1.09010 * 109.46871 * 85.68717 * 3 2 1 31 31 H 1.09005 * 117.49803 * 145.01844 * 4 2 1 32 32 H 1.09004 * 117.49669 * 0.02562 * 4 2 1 33 33 H 0.96998 * 120.00055 * 5.55359 * 9 7 5 34 34 H 1.07997 * 119.90892 * 0.02562 * 11 10 9 35 35 H 1.08001 * 120.07234 * 179.97438 * 12 11 10 36 36 H 0.96999 * 119.99961 * 179.97438 * 17 16 14 37 37 H 1.08003 * 120.09164 * 180.26908 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2364 -1.1211 0.7650 6 1 1.6114 -1.8588 1.2683 7 6 3.5292 -0.7812 1.4609 8 8 3.9719 0.3463 1.4011 9 7 4.1936 -1.7304 2.1496 10 6 5.3247 -1.3917 2.8879 11 6 5.4856 -0.0860 3.3513 12 6 6.5904 0.2531 4.0754 13 6 7.5713 -0.7189 4.3549 14 6 8.7176 -0.3748 5.1033 15 1 8.6440 0.3485 5.9018 16 6 9.9489 -0.9709 4.8106 17 7 10.0205 -1.9153 3.9074 18 14 11.4908 -0.4189 5.7090 19 1 11.6680 -1.2361 6.9362 20 1 12.6695 -0.5943 4.8230 21 1 11.3606 1.0126 6.0821 22 6 7.4001 -2.0367 3.8883 23 6 6.2922 -2.3603 3.1602 24 17 6.0817 -3.9821 2.5777 25 1 -0.3634 0.0773 1.0248 26 1 -0.3633 0.8488 -0.5793 27 1 -0.3633 -0.9260 -0.4455 28 1 3.1825 1.3083 -0.4454 29 1 1.5812 2.0742 -0.5792 30 1 2.2772 1.7413 1.0249 31 1 3.1715 -0.8752 -1.2683 32 1 1.6111 -1.8583 -1.2686 33 1 3.8837 -2.6494 2.1311 34 1 4.7329 0.6581 3.1368 35 1 6.7136 1.2647 4.4330 36 1 10.8743 -2.3284 3.7043 37 1 8.1458 -2.7881 4.1025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452642615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:42 Heat of formation + Delta-G solvation = -5.377067 kcal Electronic energy + Delta-G solvation = -20705.383410 eV Core-core repulsion = 17473.725779 eV Total energy + Delta-G solvation = -3231.657631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.22613 -38.22166 -36.73185 -35.53912 -34.41152 -33.02494 -29.82809 -29.43945 -28.79489 -27.42441 -25.59055 -23.60291 -21.77660 -20.89157 -19.84520 -18.93735 -17.58744 -16.78719 -16.44659 -15.36789 -14.94023 -14.54941 -14.21702 -14.13439 -13.68332 -13.35134 -13.18848 -12.92274 -12.52534 -12.47337 -12.36107 -11.98146 -11.80850 -11.66656 -11.42314 -11.23028 -11.12574 -10.93513 -10.64162 -10.35241 -10.18429 -9.97029 -9.81330 -9.76591 -9.51083 -9.08261 -8.84146 -7.56068 -6.95415 -6.71567 -4.45637 2.30596 2.80998 2.93388 3.06087 3.09327 3.12988 3.21535 3.55770 3.85638 3.92240 4.56923 4.63004 4.72687 4.83916 5.05169 5.23953 5.44617 5.51864 5.58124 5.64578 5.85455 5.91316 5.99664 6.06984 6.19636 6.21559 6.49897 6.59091 6.66886 6.87298 7.01128 7.14791 7.31640 7.56783 7.66255 7.87536 8.09192 8.16313 8.43036 8.68184 8.78974 8.82419 10.18963 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025634 B = 0.003954 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.044826 B = 7080.449924 C = 7867.119553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.103 4.103 4 C -0.149 4.149 5 C -0.185 4.185 6 H 0.119 0.881 7 C 0.529 3.471 8 O -0.524 6.524 9 N -0.646 5.646 10 C 0.020 3.980 11 C -0.086 4.086 12 C -0.198 4.198 13 C 0.105 3.895 14 C -0.457 4.457 15 H 0.080 0.920 16 C 0.069 3.931 17 N -0.805 5.805 18 Si 0.918 3.082 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.133 4.133 23 C -0.028 4.028 24 Cl -0.120 7.120 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.399 0.601 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.281 0.719 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.462 -1.037 -5.495 13.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.160 4.160 4 C -0.187 4.187 5 C -0.207 4.207 6 H 0.137 0.863 7 C 0.317 3.683 8 O -0.401 6.401 9 N -0.288 5.288 10 C -0.074 4.074 11 C -0.106 4.106 12 C -0.218 4.218 13 C 0.102 3.898 14 C -0.487 4.487 15 H 0.098 0.902 16 C -0.147 4.147 17 N -0.432 5.432 18 Si 0.743 3.257 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.153 4.153 23 C -0.056 4.056 24 Cl -0.092 7.092 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.234 0.766 34 H 0.143 0.857 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.013 -0.530 -5.699 13.307 hybrid contribution 0.677 -0.692 0.248 0.999 sum -11.336 -1.222 -5.452 12.638 Atomic orbital electron populations 1.21388 0.91764 1.01982 1.02092 1.21560 0.94412 0.91993 1.01557 1.21358 0.99665 0.92247 1.02720 1.23209 1.02973 1.01327 0.91164 1.22361 0.97929 1.04711 0.95653 0.86309 1.19572 0.84777 0.85229 0.78771 1.90648 1.67881 1.20973 1.60634 1.42998 1.27221 1.11428 1.47194 1.16992 0.89855 0.94706 1.05853 1.20530 0.98729 0.93837 0.97496 1.20925 0.97331 0.98526 1.05029 1.17599 0.91904 0.89584 0.90760 1.19489 0.92124 1.21347 1.15738 0.90154 1.25922 1.01138 0.93441 0.94204 1.69737 1.27618 1.19577 1.26261 0.86145 0.79884 0.80153 0.79557 1.19418 1.20205 1.18611 1.21198 0.95169 0.98037 1.00919 1.20361 0.97469 0.82790 1.04982 1.98249 1.97279 1.25068 1.88573 0.92038 0.91762 0.92447 0.91513 0.93596 0.91264 0.88235 0.88113 0.76629 0.85672 0.87894 0.90807 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.85 37.16 0.37 -0.65 16 2 C -0.09 -1.10 2.70 -154.51 -0.42 -1.52 16 3 C -0.10 -1.36 8.09 37.15 0.30 -1.06 16 4 C -0.15 -1.67 9.52 -26.73 -0.25 -1.92 16 5 C -0.19 -2.37 5.91 -91.77 -0.54 -2.91 16 6 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 7 C 0.53 9.15 7.39 -10.98 -0.08 9.07 16 8 O -0.52 -10.57 10.23 5.55 0.06 -10.51 16 9 N -0.65 -11.72 5.16 -9.71 -0.05 -11.77 16 10 C 0.02 0.44 6.44 -83.52 -0.54 -0.10 16 11 C -0.09 -1.99 8.64 -39.79 -0.34 -2.33 16 12 C -0.20 -4.81 9.74 -39.25 -0.38 -5.19 16 13 C 0.10 2.72 5.55 -106.80 -0.59 2.12 16 14 C -0.46 -11.77 9.02 -37.86 -0.34 -12.11 16 15 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 16 C 0.07 1.70 5.42 -17.34 -0.09 1.61 16 17 N -0.81 -20.53 10.61 55.55 0.59 -19.94 16 18 Si 0.92 18.53 29.56 -169.99 -5.03 13.50 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 22 C -0.13 -3.36 8.38 -39.23 -0.33 -3.69 16 23 C -0.03 -0.64 6.30 -39.71 -0.25 -0.89 16 24 Cl -0.12 -2.32 27.74 -51.86 -1.44 -3.76 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 27 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 28 H 0.07 1.00 7.01 -51.93 -0.36 0.64 16 29 H 0.05 0.50 7.92 -51.93 -0.41 0.09 16 30 H 0.07 1.03 7.26 -51.92 -0.38 0.65 16 31 H 0.10 1.23 8.05 -51.93 -0.42 0.81 16 32 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 33 H 0.40 6.26 7.73 -40.82 -0.32 5.95 16 34 H 0.13 2.83 5.76 -52.49 -0.30 2.53 16 35 H 0.10 2.35 8.06 -52.49 -0.42 1.92 16 36 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 37 H 0.14 3.79 6.15 -52.48 -0.32 3.47 16 LS Contribution 321.83 15.07 4.85 4.85 Total: -1.00 -27.59 321.83 -9.08 -36.68 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -4.57 Total: 10.52 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -3.50 Total: -19.57 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 0.54 Total: -31.71 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.06 Total: -10.51 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -1.44 Total: -3.76 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.59 -9.08 -36.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452642615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.300 kcal (2) G-P(sol) polarization free energy of solvation -27.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds