Wall clock time and date at job start Tue Mar 31 2020 06:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 115.56387 * 2 1 4 4 C 1.53004 * 117.49755 * 214.30786 * 2 1 3 5 5 C 1.52993 * 60.00358 * 252.51510 * 4 2 1 6 6 H 1.08999 * 117.50183 * 107.51087 * 5 4 2 7 7 C 1.50703 * 117.49995 * 252.51466 * 5 4 2 8 8 O 1.21284 * 119.99973 * 68.60508 * 7 5 4 9 9 N 1.34779 * 119.99863 * 248.61288 * 7 5 4 10 10 C 1.39260 * 119.99848 * 185.56533 * 9 7 5 11 11 C 1.39473 * 119.83979 * 24.90634 * 10 9 7 12 12 C 1.36378 * 120.17642 * 179.97438 * 11 10 9 13 13 C 1.40885 * 119.85254 * 0.02562 * 12 11 10 14 14 C 1.41153 * 120.15921 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99925 * 34.91639 * 14 13 12 16 16 C 1.39896 * 120.00063 * 214.91205 * 14 13 12 17 17 N 1.30875 * 120.00069 * 355.19001 * 16 14 13 18 18 Si 1.86801 * 120.00024 * 175.18782 * 16 14 13 19 19 H 1.48495 * 109.47097 * 90.00233 * 18 16 14 20 20 H 1.48499 * 109.47067 * 210.00172 * 18 16 14 21 21 H 1.48506 * 109.47061 * 329.99958 * 18 16 14 22 22 C 1.40844 * 119.68317 * 359.73059 * 13 12 11 23 23 C 1.36475 * 119.81981 * 0.54112 * 22 13 12 24 24 Cl 1.73598 * 119.93054 * 179.72888 * 23 22 13 25 25 H 1.09004 * 109.47320 * 274.31202 * 1 2 3 26 26 H 1.09000 * 109.47036 * 34.31185 * 1 2 3 27 27 H 1.08997 * 109.47194 * 154.30907 * 1 2 3 28 28 H 1.09006 * 109.47216 * 205.68585 * 3 2 1 29 29 H 1.08998 * 109.47274 * 325.69312 * 3 2 1 30 30 H 1.09010 * 109.46871 * 85.68717 * 3 2 1 31 31 H 1.09005 * 117.49803 * 145.01844 * 4 2 1 32 32 H 1.09004 * 117.49669 * 0.02562 * 4 2 1 33 33 H 0.96998 * 120.00055 * 5.55359 * 9 7 5 34 34 H 1.07997 * 119.90892 * 0.02562 * 11 10 9 35 35 H 1.08001 * 120.07234 * 179.97438 * 12 11 10 36 36 H 0.96999 * 119.99961 * 179.97438 * 17 16 14 37 37 H 1.08003 * 120.09164 * 180.26908 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2364 -1.1211 0.7650 6 1 1.6114 -1.8588 1.2683 7 6 3.5292 -0.7812 1.4609 8 8 3.9719 0.3463 1.4011 9 7 4.1936 -1.7304 2.1496 10 6 5.3247 -1.3917 2.8879 11 6 5.4856 -0.0860 3.3513 12 6 6.5904 0.2531 4.0754 13 6 7.5713 -0.7189 4.3549 14 6 8.7176 -0.3748 5.1033 15 1 8.6440 0.3485 5.9018 16 6 9.9489 -0.9709 4.8106 17 7 10.0205 -1.9153 3.9074 18 14 11.4908 -0.4189 5.7090 19 1 11.6680 -1.2361 6.9362 20 1 12.6695 -0.5943 4.8230 21 1 11.3606 1.0126 6.0821 22 6 7.4001 -2.0367 3.8883 23 6 6.2922 -2.3603 3.1602 24 17 6.0817 -3.9821 2.5777 25 1 -0.3634 0.0773 1.0248 26 1 -0.3633 0.8488 -0.5793 27 1 -0.3633 -0.9260 -0.4455 28 1 3.1825 1.3083 -0.4454 29 1 1.5812 2.0742 -0.5792 30 1 2.2772 1.7413 1.0249 31 1 3.1715 -0.8752 -1.2683 32 1 1.6111 -1.8583 -1.2686 33 1 3.8837 -2.6494 2.1311 34 1 4.7329 0.6581 3.1368 35 1 6.7136 1.2647 4.4330 36 1 10.8743 -2.3284 3.7043 37 1 8.1458 -2.7881 4.1025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452642615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:41 Heat of formation + Delta-G solvation = -18.971696 kcal Electronic energy + Delta-G solvation = -20705.972917 eV Core-core repulsion = 17473.725779 eV Total energy + Delta-G solvation = -3232.247138 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.61124 -39.74900 -38.09728 -37.26456 -36.07269 -34.78509 -31.35347 -31.19441 -30.13604 -28.30763 -27.26319 -24.97831 -23.51173 -22.57909 -21.20875 -20.07913 -19.41458 -18.20273 -17.99618 -17.17031 -16.29246 -16.00901 -15.80740 -15.32482 -14.95211 -14.75165 -14.52965 -14.49335 -14.17209 -13.92204 -13.47437 -13.44916 -13.20854 -12.88465 -12.80694 -12.73775 -12.61852 -12.31866 -12.09582 -11.98040 -11.71860 -11.61839 -11.28726 -11.13559 -10.87650 -10.70722 -10.32418 -9.41822 -8.77155 -8.54922 -6.38966 0.57335 0.92786 1.36132 1.40589 1.42297 1.54070 1.69471 2.20192 2.23640 2.68994 2.84115 3.52066 3.64193 3.73545 3.86894 4.13951 4.21510 4.35996 4.65102 4.71483 4.84087 4.84781 4.88369 4.97991 5.02429 5.08743 5.11704 5.13604 5.21764 5.28260 5.35004 5.44905 5.56973 5.69007 5.84008 6.02432 6.22041 6.50851 6.63581 6.85282 6.89329 7.31244 8.37143 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025634 B = 0.003954 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.044826 B = 7080.449924 C = 7867.119553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.095 4.095 3 C -0.102 4.102 4 C -0.136 4.136 5 C -0.193 4.193 6 H 0.149 0.851 7 C 0.525 3.475 8 O -0.556 6.556 9 N -0.644 5.644 10 C 0.032 3.968 11 C -0.094 4.094 12 C -0.208 4.208 13 C 0.076 3.924 14 C -0.490 4.490 15 H 0.081 0.919 16 C 0.028 3.972 17 N -0.837 5.837 18 Si 0.990 3.010 19 H -0.260 1.260 20 H -0.271 1.271 21 H -0.260 1.260 22 C -0.150 4.150 23 C -0.036 4.036 24 Cl -0.087 7.087 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.412 0.588 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.287 0.713 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.174 -1.823 -6.471 15.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.159 4.159 4 C -0.173 4.173 5 C -0.214 4.214 6 H 0.167 0.833 7 C 0.314 3.686 8 O -0.435 6.435 9 N -0.288 5.288 10 C -0.063 4.063 11 C -0.114 4.114 12 C -0.228 4.228 13 C 0.073 3.927 14 C -0.521 4.521 15 H 0.099 0.901 16 C -0.184 4.184 17 N -0.464 5.464 18 Si 0.811 3.189 19 H -0.185 1.185 20 H -0.196 1.196 21 H -0.184 1.184 22 C -0.170 4.170 23 C -0.065 4.065 24 Cl -0.058 7.058 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.154 0.846 33 H 0.250 0.750 34 H 0.147 0.853 35 H 0.127 0.873 36 H 0.097 0.903 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.768 -1.340 -6.691 15.366 hybrid contribution 1.069 -0.464 0.434 1.243 sum -12.699 -1.804 -6.257 14.271 Atomic orbital electron populations 1.21401 0.89054 1.03587 1.02674 1.21708 0.96209 0.90657 1.00951 1.21287 0.98996 0.94279 1.01323 1.23325 1.02686 1.01587 0.89678 1.22397 0.95821 1.06585 0.96597 0.83343 1.20482 0.85756 0.84385 0.77933 1.90642 1.68963 1.22376 1.61548 1.43039 1.26185 1.12558 1.47012 1.17079 0.90558 0.94011 1.04629 1.20645 0.98597 0.94657 0.97538 1.21074 0.97614 0.98715 1.05366 1.17896 0.92684 0.90319 0.91845 1.19737 0.93126 1.22568 1.16635 0.90104 1.26778 1.03830 0.93129 0.94699 1.69812 1.28651 1.20520 1.27419 0.85071 0.75715 0.79691 0.78445 1.18473 1.19553 1.18356 1.21098 0.95897 0.97638 1.02393 1.20390 0.96863 0.84748 1.04473 1.98244 1.97119 1.22424 1.88050 0.91883 0.90797 0.90355 0.94139 0.91372 0.93585 0.89941 0.84604 0.75041 0.85336 0.87347 0.90272 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.85 71.98 0.71 -0.81 16 2 C -0.09 -1.95 2.70 -52.18 -0.14 -2.09 16 3 C -0.10 -2.62 8.09 71.98 0.58 -2.03 16 4 C -0.14 -2.61 9.52 30.59 0.29 -2.31 16 5 C -0.19 -4.42 5.91 -11.54 -0.07 -4.49 16 6 H 0.15 2.54 8.14 -2.39 -0.02 2.52 16 7 C 0.52 17.67 7.39 87.66 0.65 18.32 16 8 O -0.56 -22.66 10.23 -3.04 -0.03 -22.69 16 9 N -0.64 -22.71 5.16 -303.01 -1.56 -24.27 16 10 C 0.03 1.43 6.44 38.59 0.25 1.68 16 11 C -0.09 -4.45 8.64 22.13 0.19 -4.26 16 12 C -0.21 -10.45 9.74 22.48 0.22 -10.24 16 13 C 0.08 4.07 5.55 -21.28 -0.12 3.95 16 14 C -0.49 -26.16 9.02 23.39 0.21 -25.95 16 15 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 16 C 0.03 1.43 5.42 85.24 0.46 1.89 16 17 N -0.84 -43.70 10.61 21.82 0.23 -43.47 16 18 Si 0.99 38.34 29.56 68.60 2.03 40.36 16 19 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 22 C -0.15 -7.81 8.38 22.50 0.19 -7.62 16 23 C -0.04 -1.67 6.30 22.18 0.14 -1.53 16 24 Cl -0.09 -3.28 27.74 -2.72 -0.08 -3.35 16 25 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.07 0.90 7.92 -2.39 -0.02 0.88 16 27 H 0.08 0.78 7.90 -2.39 -0.02 0.76 16 28 H 0.04 1.23 7.01 -2.38 -0.02 1.21 16 29 H 0.07 1.40 7.92 -2.39 -0.02 1.38 16 30 H 0.05 1.38 7.26 -2.38 -0.02 1.36 16 31 H 0.08 1.90 8.05 -2.38 -0.02 1.88 16 32 H 0.14 1.70 8.05 -2.38 -0.02 1.68 16 33 H 0.41 12.16 7.73 -92.71 -0.72 11.44 16 34 H 0.13 5.95 5.76 -2.91 -0.02 5.94 16 35 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 36 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 37 H 0.13 7.01 6.15 -2.91 -0.02 6.99 16 Total: -1.00 -61.91 321.83 4.54 -57.38 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.39 Total: 31.53 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 3.56 Total: -35.50 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -1.33 Total: -67.74 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.03 Total: -22.69 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.36 kcal Atomic # 17 Polarization: -3.28 SS G_CDS: -0.08 Total: -3.35 kcal Total: -61.91 4.54 -57.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452642615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.406 kcal (2) G-P(sol) polarization free energy of solvation -61.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds