Wall clock time and date at job start Tue Mar 31 2020 06:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 115.54804 * 2 1 4 4 C 1.50698 * 109.47207 * 277.67415 * 3 2 1 5 5 O 1.21282 * 120.00263 * 355.32035 * 4 3 2 6 6 N 1.34778 * 120.00143 * 175.31066 * 4 3 2 7 7 C 1.39261 * 120.00307 * 184.71297 * 6 4 3 8 8 C 1.39471 * 119.84139 * 329.18186 * 7 6 4 9 9 C 1.36368 * 120.18222 * 180.29695 * 8 7 6 10 10 C 1.40890 * 119.85077 * 359.72495 * 9 8 7 11 11 C 1.41150 * 120.15961 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99947 * 30.34385 * 11 10 9 13 13 C 1.39901 * 119.99778 * 210.34466 * 11 10 9 14 14 N 1.30872 * 120.00257 * 12.65472 * 13 11 10 15 15 Si 1.86798 * 119.99968 * 192.65353 * 13 11 10 16 16 H 1.48497 * 109.47345 * 89.99848 * 15 13 11 17 17 H 1.48502 * 109.47195 * 210.00323 * 15 13 11 18 18 H 1.48506 * 109.47099 * 329.99890 * 15 13 11 19 19 C 1.40845 * 119.67887 * 0.02562 * 10 9 8 20 20 C 1.36473 * 119.82309 * 359.97438 * 19 10 9 21 21 Cl 1.73594 * 119.92889 * 180.02562 * 20 19 10 22 22 C 1.52995 * 117.51779 * 145.70413 * 2 1 3 23 23 C 1.52991 * 60.00232 * 107.47920 * 22 2 1 24 24 H 1.08996 * 109.47172 * 65.17235 * 1 2 3 25 25 H 1.08999 * 109.47084 * 185.17217 * 1 2 3 26 26 H 1.09004 * 109.46905 * 305.16926 * 1 2 3 27 27 H 1.09004 * 109.46960 * 157.68036 * 3 2 1 28 28 H 1.09001 * 109.47461 * 37.68077 * 3 2 1 29 29 H 0.97002 * 119.99965 * 4.71878 * 6 4 3 30 30 H 1.08004 * 119.90273 * 0.02562 * 8 7 6 31 31 H 1.08001 * 120.07293 * 179.70022 * 9 8 7 32 32 H 0.97004 * 120.00095 * 179.97438 * 14 13 11 33 33 H 1.08004 * 120.08329 * 180.02562 * 19 10 9 34 34 H 1.09007 * 117.50073 * 214.97166 * 22 2 1 35 35 H 1.09000 * 117.49957 * 359.97438 * 22 2 1 36 36 H 1.09001 * 117.50039 * 252.51187 * 23 22 2 37 37 H 1.09006 * 117.50346 * 107.48524 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2353 1.9154 -1.4081 5 8 1.8626 1.2238 -2.3320 6 7 2.6901 3.1627 -1.6407 7 6 2.6408 3.6932 -2.9274 8 6 2.7552 2.8483 -4.0312 9 6 2.7140 3.3611 -5.2941 10 6 2.5496 4.7475 -5.4831 11 6 2.5055 5.2851 -6.7875 12 1 2.1139 4.6941 -7.6022 13 6 2.9691 6.5835 -7.0249 14 7 3.6648 7.2077 -6.1089 15 14 2.5952 7.4263 -8.6495 16 1 1.3150 8.1705 -8.5380 17 1 3.6908 8.3728 -8.9799 18 1 2.4826 6.4056 -9.7223 19 6 2.4294 5.5944 -4.3642 20 6 2.4725 5.0672 -3.1062 21 17 2.3240 6.1085 -1.7251 22 6 2.2369 -1.1210 0.7645 23 6 2.2365 -1.1207 -0.7654 24 1 -0.3633 0.4315 -0.9326 25 1 -0.3633 -1.0235 0.0926 26 1 -0.3633 0.5920 0.8401 27 1 3.2043 1.2982 0.3903 28 1 1.6128 2.0590 0.6282 29 1 3.0517 3.6909 -0.9119 30 1 2.8811 1.7857 -3.8851 31 1 2.8075 2.7058 -6.1476 32 1 3.9865 8.1079 -6.2736 33 1 2.3028 6.6582 -4.5015 34 1 3.1722 -0.8751 1.2677 35 1 1.6120 -1.8585 1.2681 36 1 1.6112 -1.8582 -1.2686 37 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452647220.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:10 Heat of formation + Delta-G solvation = -9.091071 kcal Electronic energy + Delta-G solvation = -20643.082022 eV Core-core repulsion = 17411.263340 eV Total energy + Delta-G solvation = -3231.818682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.96361 -38.15349 -36.97107 -35.54109 -34.38788 -33.05797 -30.15440 -29.44166 -28.80514 -27.89379 -24.95720 -22.39376 -22.01054 -21.04875 -19.96263 -18.86962 -17.59013 -16.78516 -16.28736 -15.55264 -15.35410 -14.93354 -14.31361 -14.10957 -13.81391 -13.34677 -13.03603 -12.77316 -12.54472 -12.51847 -12.23671 -11.99993 -11.78268 -11.47748 -11.29423 -11.18874 -11.13407 -10.98914 -10.46561 -10.37451 -10.22931 -10.10556 -9.85171 -9.71525 -9.51725 -9.08028 -8.78954 -7.56651 -7.06781 -6.82658 -4.43643 2.39104 2.82963 2.98878 3.04715 3.07737 3.13591 3.28021 3.54658 3.88066 4.04814 4.50701 4.63249 4.78508 4.92838 5.00052 5.30583 5.46961 5.50808 5.56458 5.62260 5.84279 5.89687 6.01672 6.05657 6.18620 6.22112 6.30801 6.54362 6.66995 6.86506 7.02634 7.10217 7.30515 7.53089 7.67589 7.85655 8.08111 8.16259 8.40435 8.68951 8.75135 8.83454 10.11622 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026749 B = 0.003841 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.502519 B = 7288.207415 C = 8007.790112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.109 4.109 3 C -0.104 4.104 4 C 0.501 3.499 5 O -0.522 6.522 6 N -0.652 5.652 7 C 0.008 3.992 8 C -0.075 4.075 9 C -0.208 4.208 10 C 0.114 3.886 11 C -0.457 4.457 12 H 0.082 0.918 13 C 0.073 3.927 14 N -0.794 5.794 15 Si 0.913 3.087 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.140 4.140 20 C -0.019 4.019 21 Cl -0.121 7.121 22 C -0.183 4.183 23 C -0.149 4.149 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.397 0.603 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.283 0.717 33 H 0.130 0.870 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.479 -7.110 11.032 13.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.110 4.110 3 C -0.144 4.144 4 C 0.288 3.712 5 O -0.399 6.399 6 N -0.296 5.296 7 C -0.085 4.085 8 C -0.095 4.095 9 C -0.228 4.228 10 C 0.110 3.890 11 C -0.486 4.486 12 H 0.100 0.900 13 C -0.145 4.145 14 N -0.420 5.420 15 Si 0.737 3.263 16 H -0.192 1.192 17 H -0.202 1.202 18 H -0.185 1.185 19 C -0.160 4.160 20 C -0.048 4.048 21 Cl -0.093 7.093 22 C -0.220 4.220 23 C -0.186 4.186 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.232 0.768 30 H 0.143 0.857 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.148 0.852 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.643 -7.303 10.557 12.942 hybrid contribution 0.179 1.006 -0.156 1.033 sum -1.464 -6.297 10.401 12.247 Atomic orbital electron populations 1.21289 0.91921 1.01506 1.02219 1.20998 0.94833 0.89503 1.05658 1.21200 1.02212 0.96069 0.94943 1.20519 0.77800 0.81791 0.91132 1.90641 1.47158 1.57130 1.44945 1.43006 1.61212 1.15792 1.09564 1.16896 1.17694 0.90095 0.83857 1.20551 0.99100 0.98792 0.91025 1.20864 1.10879 0.95705 0.95385 1.17553 0.87896 0.90548 0.92961 1.19540 1.36314 0.98239 0.94541 0.89955 1.25930 0.92632 0.97058 0.98837 1.69795 1.24742 1.12938 1.34494 0.86231 0.78982 0.79434 0.81643 1.19224 1.20242 1.18547 1.20848 1.05374 1.01034 0.88777 1.20367 1.08748 0.88221 0.87421 1.98248 1.96923 1.68370 1.45765 1.23180 1.02094 1.01298 0.95408 1.22836 1.02436 1.00513 0.92847 0.91505 0.92691 0.92603 0.89151 0.88826 0.76843 0.85721 0.87998 0.90637 0.85194 0.89086 0.88992 0.88969 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.71 37.16 0.36 -0.93 16 2 C -0.11 -1.29 1.68 -154.51 -0.26 -1.55 16 3 C -0.10 -1.25 5.66 -27.88 -0.16 -1.40 16 4 C 0.50 8.35 7.60 -10.99 -0.08 8.26 16 5 O -0.52 -10.39 12.31 5.56 0.07 -10.32 16 6 N -0.65 -11.53 5.08 -9.71 -0.05 -11.58 16 7 C 0.01 0.18 6.39 -83.52 -0.53 -0.35 16 8 C -0.07 -1.73 8.66 -39.80 -0.34 -2.07 16 9 C -0.21 -5.07 9.74 -39.25 -0.38 -5.45 16 10 C 0.11 2.94 5.52 -106.80 -0.59 2.35 16 11 C -0.46 -11.72 9.03 -37.86 -0.34 -12.07 16 12 H 0.08 2.03 7.88 -52.49 -0.41 1.62 16 13 C 0.07 1.78 5.20 -17.34 -0.09 1.69 16 14 N -0.79 -19.95 11.05 55.55 0.61 -19.34 16 15 Si 0.91 18.24 29.58 -169.99 -5.03 13.21 16 16 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 17 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 C -0.14 -3.52 8.35 -39.23 -0.33 -3.85 16 20 C -0.02 -0.44 6.30 -39.72 -0.25 -0.69 16 21 Cl -0.12 -2.32 27.84 -51.86 -1.44 -3.76 16 22 C -0.18 -1.79 9.86 -26.74 -0.26 -2.06 16 23 C -0.15 -1.82 8.79 -26.74 -0.24 -2.05 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.91 7.93 -51.93 -0.41 0.50 16 28 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 29 H 0.40 6.02 7.92 -40.82 -0.32 5.70 16 30 H 0.13 2.83 5.86 -52.48 -0.31 2.52 16 31 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 32 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 33 H 0.13 3.40 6.41 -52.48 -0.34 3.06 16 34 H 0.09 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 327.00 15.07 4.93 4.93 Total: -1.00 -27.58 327.00 -9.13 -36.71 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -4.72 Total: 10.30 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -3.50 Total: -20.16 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.56 Total: -30.91 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -1.44 Total: -3.76 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.58 -9.13 -36.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452647220.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.623 kcal (2) G-P(sol) polarization free energy of solvation -27.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds