Wall clock time and date at job start Tue Mar 31 2020 06:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 115.54804 * 2 1 4 4 C 1.50698 * 109.47207 * 277.67415 * 3 2 1 5 5 O 1.21282 * 120.00263 * 355.32035 * 4 3 2 6 6 N 1.34778 * 120.00143 * 175.31066 * 4 3 2 7 7 C 1.39261 * 120.00307 * 184.71297 * 6 4 3 8 8 C 1.39471 * 119.84139 * 329.18186 * 7 6 4 9 9 C 1.36368 * 120.18222 * 180.29695 * 8 7 6 10 10 C 1.40890 * 119.85077 * 359.72495 * 9 8 7 11 11 C 1.41150 * 120.15961 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99947 * 30.34385 * 11 10 9 13 13 C 1.39901 * 119.99778 * 210.34466 * 11 10 9 14 14 N 1.30872 * 120.00257 * 12.65472 * 13 11 10 15 15 Si 1.86798 * 119.99968 * 192.65353 * 13 11 10 16 16 H 1.48497 * 109.47345 * 89.99848 * 15 13 11 17 17 H 1.48502 * 109.47195 * 210.00323 * 15 13 11 18 18 H 1.48506 * 109.47099 * 329.99890 * 15 13 11 19 19 C 1.40845 * 119.67887 * 0.02562 * 10 9 8 20 20 C 1.36473 * 119.82309 * 359.97438 * 19 10 9 21 21 Cl 1.73594 * 119.92889 * 180.02562 * 20 19 10 22 22 C 1.52995 * 117.51779 * 145.70413 * 2 1 3 23 23 C 1.52991 * 60.00232 * 107.47920 * 22 2 1 24 24 H 1.08996 * 109.47172 * 65.17235 * 1 2 3 25 25 H 1.08999 * 109.47084 * 185.17217 * 1 2 3 26 26 H 1.09004 * 109.46905 * 305.16926 * 1 2 3 27 27 H 1.09004 * 109.46960 * 157.68036 * 3 2 1 28 28 H 1.09001 * 109.47461 * 37.68077 * 3 2 1 29 29 H 0.97002 * 119.99965 * 4.71878 * 6 4 3 30 30 H 1.08004 * 119.90273 * 0.02562 * 8 7 6 31 31 H 1.08001 * 120.07293 * 179.70022 * 9 8 7 32 32 H 0.97004 * 120.00095 * 179.97438 * 14 13 11 33 33 H 1.08004 * 120.08329 * 180.02562 * 19 10 9 34 34 H 1.09007 * 117.50073 * 214.97166 * 22 2 1 35 35 H 1.09000 * 117.49957 * 359.97438 * 22 2 1 36 36 H 1.09001 * 117.50039 * 252.51187 * 23 22 2 37 37 H 1.09006 * 117.50346 * 107.48524 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2353 1.9154 -1.4081 5 8 1.8626 1.2238 -2.3320 6 7 2.6901 3.1627 -1.6407 7 6 2.6408 3.6932 -2.9274 8 6 2.7552 2.8483 -4.0312 9 6 2.7140 3.3611 -5.2941 10 6 2.5496 4.7475 -5.4831 11 6 2.5055 5.2851 -6.7875 12 1 2.1139 4.6941 -7.6022 13 6 2.9691 6.5835 -7.0249 14 7 3.6648 7.2077 -6.1089 15 14 2.5952 7.4263 -8.6495 16 1 1.3150 8.1705 -8.5380 17 1 3.6908 8.3728 -8.9799 18 1 2.4826 6.4056 -9.7223 19 6 2.4294 5.5944 -4.3642 20 6 2.4725 5.0672 -3.1062 21 17 2.3240 6.1085 -1.7251 22 6 2.2369 -1.1210 0.7645 23 6 2.2365 -1.1207 -0.7654 24 1 -0.3633 0.4315 -0.9326 25 1 -0.3633 -1.0235 0.0926 26 1 -0.3633 0.5920 0.8401 27 1 3.2043 1.2982 0.3903 28 1 1.6128 2.0590 0.6282 29 1 3.0517 3.6909 -0.9119 30 1 2.8811 1.7857 -3.8851 31 1 2.8075 2.7058 -6.1476 32 1 3.9865 8.1079 -6.2736 33 1 2.3028 6.6582 -4.5015 34 1 3.1722 -0.8751 1.2677 35 1 1.6120 -1.8585 1.2681 36 1 1.6112 -1.8582 -1.2686 37 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452647220.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:09 Heat of formation + Delta-G solvation = -22.575693 kcal Electronic energy + Delta-G solvation = -20643.666759 eV Core-core repulsion = 17411.263340 eV Total energy + Delta-G solvation = -3232.403419 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.37409 -39.58441 -38.28751 -37.24663 -36.04302 -34.77724 -31.55162 -31.29305 -30.14559 -28.97716 -26.69958 -23.73972 -23.25168 -22.78450 -21.46147 -19.94352 -19.41168 -18.28258 -17.76732 -17.16696 -16.62249 -16.11409 -15.94314 -15.49089 -15.18380 -14.79163 -14.62456 -14.34329 -14.10716 -13.83644 -13.61877 -13.23799 -12.99676 -12.89827 -12.88742 -12.67625 -12.30171 -12.15285 -12.08374 -12.02277 -11.88952 -11.58100 -11.28902 -11.10996 -10.75197 -10.63769 -10.30434 -9.41686 -8.86557 -8.63510 -6.35114 0.63428 0.94467 1.37991 1.40361 1.45370 1.53294 1.83309 2.21469 2.28662 2.68749 3.01702 3.56461 3.71790 3.90215 3.94830 4.12541 4.22920 4.38868 4.62639 4.69821 4.71111 4.85646 4.93812 4.98662 4.98853 5.02732 5.12271 5.17220 5.24499 5.25695 5.33019 5.40396 5.44590 5.69524 5.85544 6.01059 6.22930 6.49794 6.69855 6.84509 6.87260 7.39955 8.32455 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026749 B = 0.003841 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.502519 B = 7288.207415 C = 8007.790112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.125 4.125 3 C -0.095 4.095 4 C 0.498 3.502 5 O -0.556 6.556 6 N -0.650 5.650 7 C 0.022 3.978 8 C -0.083 4.083 9 C -0.220 4.220 10 C 0.085 3.915 11 C -0.493 4.493 12 H 0.080 0.920 13 C 0.036 3.964 14 N -0.825 5.825 15 Si 0.984 3.016 16 H -0.262 1.262 17 H -0.268 1.268 18 H -0.259 1.259 19 C -0.157 4.157 20 C -0.027 4.027 21 Cl -0.087 7.087 22 C -0.150 4.150 23 C -0.173 4.173 24 H 0.035 0.965 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.412 0.588 30 H 0.128 0.872 31 H 0.105 0.895 32 H 0.290 0.710 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.475 -7.282 13.159 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.126 4.126 3 C -0.134 4.134 4 C 0.288 3.712 5 O -0.434 6.434 6 N -0.295 5.295 7 C -0.073 4.073 8 C -0.103 4.103 9 C -0.241 4.241 10 C 0.082 3.918 11 C -0.522 4.522 12 H 0.098 0.902 13 C -0.179 4.179 14 N -0.451 5.451 15 Si 0.805 3.195 16 H -0.187 1.187 17 H -0.192 1.192 18 H -0.183 1.183 19 C -0.177 4.177 20 C -0.056 4.056 21 Cl -0.058 7.058 22 C -0.186 4.186 23 C -0.210 4.210 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.249 0.751 30 H 0.145 0.855 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.633 -7.487 12.733 14.862 hybrid contribution 0.170 0.960 -0.649 1.171 sum -1.463 -6.528 12.085 13.813 Atomic orbital electron populations 1.21275 0.91946 1.02306 1.01271 1.21125 0.95019 0.89689 1.06759 1.21266 1.04389 0.96339 0.91455 1.21487 0.76095 0.80705 0.92945 1.90632 1.48260 1.57829 1.46712 1.43054 1.61687 1.16524 1.08253 1.16979 1.14996 0.89797 0.85521 1.20664 0.99395 0.99132 0.91150 1.21015 1.11282 0.95523 0.96242 1.17843 0.88933 0.91301 0.93702 1.19760 1.38119 0.99677 0.94641 0.90203 1.26727 0.91785 0.97041 1.02379 1.69843 1.25345 1.13504 1.36401 0.85161 0.78969 0.78249 0.77110 1.18713 1.19228 1.18276 1.20760 1.06877 1.00279 0.89824 1.20403 1.07954 0.89187 0.88033 1.98245 1.96729 1.67392 1.43464 1.23250 1.02406 0.99593 0.93385 1.22803 1.01925 1.01288 0.94961 0.94568 0.91625 0.90861 0.86399 0.86359 0.75128 0.85458 0.87702 0.89956 0.86703 0.87339 0.87362 0.89624 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 9.71 71.98 0.70 -1.63 16 2 C -0.13 -2.65 1.68 -52.18 -0.09 -2.74 16 3 C -0.10 -1.97 5.66 29.85 0.17 -1.80 16 4 C 0.50 15.87 7.60 87.66 0.67 16.53 16 5 O -0.56 -22.06 12.31 -3.04 -0.04 -22.09 16 6 N -0.65 -21.98 5.08 -303.02 -1.54 -23.52 16 7 C 0.02 0.96 6.39 38.58 0.25 1.21 16 8 C -0.08 -3.93 8.66 22.13 0.19 -3.73 16 9 C -0.22 -11.14 9.74 22.48 0.22 -10.92 16 10 C 0.09 4.59 5.52 -21.28 -0.12 4.47 16 11 C -0.49 -26.22 9.03 23.39 0.21 -26.01 16 12 H 0.08 4.11 7.88 -2.91 -0.02 4.08 16 13 C 0.04 1.77 5.20 85.24 0.44 2.21 16 14 N -0.82 -42.28 11.05 21.82 0.24 -42.04 16 15 Si 0.98 37.72 29.58 68.60 2.03 39.75 16 16 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 17 H -0.27 -9.75 7.11 99.48 0.71 -9.05 16 18 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 19 C -0.16 -8.11 8.35 22.50 0.19 -7.92 16 20 C -0.03 -1.24 6.30 22.18 0.14 -1.10 16 21 Cl -0.09 -3.20 27.84 -2.72 -0.08 -3.28 16 22 C -0.15 -2.40 9.86 30.59 0.30 -2.10 16 23 C -0.17 -3.98 8.79 30.59 0.27 -3.71 16 24 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.12 1.85 7.93 -2.38 -0.02 1.84 16 28 H 0.12 1.93 8.11 -2.39 -0.02 1.92 16 29 H 0.41 11.45 7.92 -92.71 -0.73 10.72 16 30 H 0.13 5.90 5.86 -2.91 -0.02 5.88 16 31 H 0.10 5.05 8.06 -2.91 -0.02 5.02 16 32 H 0.29 13.44 8.30 -92.71 -0.77 12.68 16 33 H 0.12 6.21 6.41 -2.91 -0.02 6.19 16 34 H 0.11 1.40 8.07 -2.38 -0.02 1.38 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -61.60 327.00 4.52 -57.08 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.36 Total: 31.34 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 3.54 Total: -37.24 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -1.30 Total: -65.56 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.04 Total: -22.09 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Atomic # 17 Polarization: -3.20 SS G_CDS: -0.08 Total: -3.28 kcal Total: -61.60 4.52 -57.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452647220.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.509 kcal (2) G-P(sol) polarization free energy of solvation -61.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds