Wall clock time and date at job start Tue Mar 31 2020 07:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99826 * 2 1 4 4 C 1.53000 * 109.46995 * 124.99717 * 3 2 1 5 5 C 1.53001 * 109.46773 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46890 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99938 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99903 * 180.27523 * 6 5 4 9 9 C 1.39271 * 120.00128 * 175.47679 * 8 6 5 10 10 C 1.39461 * 119.83668 * 34.72089 * 9 8 6 11 11 C 1.36376 * 120.18093 * 179.75975 * 10 9 8 12 12 C 1.40892 * 119.84781 * 0.51657 * 11 10 9 13 13 C 1.41145 * 120.16128 * 179.76176 * 12 11 10 14 14 H 1.08001 * 119.99814 * 34.74879 * 13 12 11 15 15 C 1.39900 * 120.00404 * 214.74837 * 13 12 11 16 16 N 1.30882 * 119.99534 * 355.59795 * 15 13 12 17 17 Si 1.86794 * 120.00422 * 175.60089 * 15 13 12 18 18 H 1.48506 * 109.46969 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47566 * 120.00011 * 17 15 13 20 20 H 1.48510 * 109.47089 * 240.00249 * 17 15 13 21 21 C 1.40843 * 119.68305 * 359.73781 * 12 11 10 22 22 C 1.36485 * 119.81689 * 0.02562 * 21 12 11 23 23 Cl 1.73602 * 119.92446 * 179.97438 * 22 21 12 24 24 H 1.08006 * 119.99735 * 180.02562 * 1 2 3 25 25 H 1.07990 * 120.00232 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99832 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47201 * 4.99602 * 3 2 1 28 28 H 1.08997 * 109.47066 * 244.99320 * 3 2 1 29 29 H 1.08995 * 109.47240 * 59.99909 * 4 3 2 30 30 H 1.09000 * 109.47315 * 299.99426 * 4 3 2 31 31 H 1.08995 * 109.47229 * 60.00004 * 5 4 3 32 32 H 1.08997 * 109.47261 * 299.99586 * 5 4 3 33 33 H 0.97008 * 120.00110 * 355.47911 * 8 6 5 34 34 H 1.07999 * 119.91196 * 0.02562 * 10 9 8 35 35 H 1.07998 * 120.07779 * 180.23059 * 11 10 9 36 36 H 0.96996 * 119.99692 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.09621 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.8003 2.6579 1.1813 6 6 4.7577 2.6853 2.3448 7 8 4.8211 1.7386 3.1003 8 7 5.5389 3.7643 2.5494 9 6 6.3546 3.8298 3.6764 10 6 6.9414 2.6678 4.1768 11 6 7.7452 2.7246 5.2770 12 6 7.9739 3.9597 5.9153 13 6 8.8007 4.0253 7.0573 14 1 9.6586 3.3747 7.1410 15 6 8.5088 4.9332 8.0810 16 7 7.5211 5.7806 7.9421 17 14 9.5288 4.9360 9.6459 18 1 10.5774 3.8884 9.5551 19 1 10.1693 6.2647 9.8169 20 1 8.6501 4.6565 10.8100 21 6 7.3740 5.1286 5.4079 22 6 6.5758 5.0572 4.3032 23 17 5.8344 6.4961 3.6759 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4026 -0.9313 29 1 3.7398 0.5066 1.0922 30 1 2.4771 1.2357 2.1130 31 1 3.0957 3.4847 1.2705 32 1 4.3582 2.7549 0.2499 33 1 5.5332 4.4952 1.9117 34 1 6.7622 1.7210 3.6891 35 1 8.2017 1.8243 5.6608 36 1 7.3185 6.4098 8.6520 37 1 7.5451 6.0789 5.8917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452647860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:07 Heat of formation + Delta-G solvation = -38.491498 kcal Electronic energy + Delta-G solvation = -20031.465365 eV Core-core repulsion = 16798.371785 eV Total energy + Delta-G solvation = -3233.093580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.28467 -39.31817 -37.23566 -36.92429 -36.08657 -34.77190 -33.29136 -31.31438 -30.91892 -28.42191 -26.61736 -23.90271 -23.11113 -22.30216 -21.09454 -20.59134 -19.42032 -18.40235 -17.83516 -17.16517 -16.93741 -16.19234 -15.92752 -15.45825 -15.31273 -14.85880 -14.52900 -14.39003 -14.33127 -14.04691 -13.50597 -13.27579 -13.17649 -12.80967 -12.69838 -12.58712 -12.46347 -12.26621 -11.94634 -11.74972 -11.73440 -11.58916 -11.57237 -11.24203 -10.81912 -10.60201 -10.16515 -9.40589 -8.82441 -8.55568 -6.40044 0.60510 0.94539 1.38133 1.40809 1.44027 1.44963 1.55769 1.78923 2.22217 2.35179 2.72564 3.51866 3.79943 3.88530 4.10353 4.32027 4.36358 4.40460 4.64263 4.69801 4.73682 4.78658 4.91598 4.97545 5.00071 5.09916 5.22856 5.25661 5.28991 5.43030 5.46272 5.71890 5.80827 5.85433 5.93492 6.03467 6.22248 6.51291 6.65769 6.85484 6.89138 7.35944 8.36689 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025300 B = 0.003237 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.461349 B = 8647.086187 C = 9283.554312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.088 4.088 4 C -0.096 4.096 5 C -0.127 4.127 6 C 0.496 3.504 7 O -0.574 6.574 8 N -0.648 5.648 9 C 0.026 3.974 10 C -0.084 4.084 11 C -0.212 4.212 12 C 0.077 3.923 13 C -0.488 4.488 14 H 0.081 0.919 15 C 0.027 3.973 16 N -0.836 5.836 17 Si 0.990 3.010 18 H -0.257 1.257 19 H -0.264 1.264 20 H -0.270 1.270 21 C -0.153 4.153 22 C -0.030 4.030 23 Cl -0.086 7.086 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.415 0.585 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.287 0.713 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.158 -2.219 -13.551 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.184 4.184 3 C -0.125 4.125 4 C -0.134 4.134 5 C -0.166 4.166 6 C 0.286 3.714 7 O -0.454 6.454 8 N -0.294 5.294 9 C -0.069 4.069 10 C -0.105 4.105 11 C -0.232 4.232 12 C 0.074 3.926 13 C -0.518 4.518 14 H 0.099 0.901 15 C -0.185 4.185 16 N -0.463 5.463 17 Si 0.811 3.189 18 H -0.181 1.181 19 H -0.189 1.189 20 H -0.195 1.195 21 C -0.174 4.174 22 C -0.059 4.059 23 Cl -0.057 7.057 24 H 0.120 0.880 25 H 0.121 0.879 26 H 0.125 0.875 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.134 0.866 32 H 0.143 0.857 33 H 0.252 0.748 34 H 0.139 0.861 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.342 -2.562 -12.995 15.654 hybrid contribution 0.336 0.452 0.731 0.923 sum -8.006 -2.110 -12.264 14.798 Atomic orbital electron populations 1.24013 0.95949 1.02500 1.01177 1.23100 0.96434 0.98962 0.99892 1.20755 0.97901 0.95575 0.98254 1.21214 0.97633 0.95965 0.98567 1.21732 0.97501 1.01280 0.96080 1.21730 0.80707 0.81485 0.87487 1.90662 1.69064 1.36578 1.49077 1.43059 1.40977 1.22236 1.23101 1.17021 1.02858 0.92356 0.94693 1.20514 0.96021 0.96734 0.97181 1.21058 1.04711 0.97120 1.00317 1.17921 0.92082 0.90391 0.92197 1.19765 1.11430 1.18643 1.01932 0.90086 1.26792 0.95608 0.92624 1.03515 1.69820 1.25885 1.15971 1.34639 0.85018 0.78409 0.79326 0.76109 1.18080 1.18873 1.19500 1.21114 1.01491 1.00190 0.94630 1.20468 1.02046 0.85880 0.97466 1.98246 1.82011 1.38665 1.86812 0.87977 0.87941 0.87536 0.90429 0.89280 0.92395 0.93382 0.86561 0.85708 0.74798 0.86078 0.87368 0.90254 0.85429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.98 14.32 67.78 0.97 -2.00 16 2 C -0.17 -2.70 9.52 25.65 0.24 -2.46 16 3 C -0.09 -1.30 5.66 29.85 0.17 -1.13 16 4 C -0.10 -1.98 4.49 30.59 0.14 -1.84 16 5 C -0.13 -2.46 5.70 29.85 0.17 -2.29 16 6 C 0.50 15.87 7.66 87.66 0.67 16.54 16 7 O -0.57 -23.75 13.37 -3.03 -0.04 -23.79 16 8 N -0.65 -21.64 5.01 -303.03 -1.52 -23.16 16 9 C 0.03 1.11 6.32 38.58 0.24 1.36 16 10 C -0.08 -3.95 8.61 22.13 0.19 -3.76 16 11 C -0.21 -10.61 9.74 22.49 0.22 -10.39 16 12 C 0.08 4.13 5.55 -21.28 -0.12 4.01 16 13 C -0.49 -25.85 9.02 23.39 0.21 -25.64 16 14 H 0.08 4.12 7.85 -2.91 -0.02 4.09 16 15 C 0.03 1.37 5.42 85.24 0.46 1.83 16 16 N -0.84 -43.43 10.60 21.82 0.23 -43.20 16 17 Si 0.99 38.18 29.56 68.60 2.03 40.21 16 18 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 19 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 20 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 21 C -0.15 -7.95 8.38 22.50 0.19 -7.76 16 22 C -0.03 -1.37 6.30 22.18 0.14 -1.23 16 23 Cl -0.09 -3.16 27.92 -2.72 -0.08 -3.24 16 24 H 0.10 1.34 8.06 -2.91 -0.02 1.31 16 25 H 0.10 1.35 7.84 -2.92 -0.02 1.33 16 26 H 0.11 1.72 8.06 -2.91 -0.02 1.70 16 27 H 0.08 1.00 7.79 -2.39 -0.02 0.98 16 28 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 30 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 31 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.41 11.02 8.05 -92.70 -0.75 10.27 16 34 H 0.12 5.55 6.18 -2.91 -0.02 5.53 16 35 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 36 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 37 H 0.13 6.96 6.13 -2.91 -0.02 6.94 16 Total: -1.00 -63.24 331.41 4.86 -58.38 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.34 Total: 29.55 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 3.90 Total: -34.75 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -1.29 Total: -66.36 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.04 Total: -23.79 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Atomic # 17 Polarization: -3.16 SS G_CDS: -0.08 Total: -3.24 kcal Total: -63.24 4.86 -58.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452647860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.888 kcal (2) G-P(sol) polarization free energy of solvation -63.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds