Wall clock time and date at job start Tue Mar 31 2020 07:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47007 * 2 1 4 4 C 1.50701 * 109.46945 * 240.00012 * 2 1 3 5 5 H 1.08003 * 120.00108 * 239.99576 * 4 2 1 6 6 C 1.37873 * 120.00113 * 60.00445 * 4 2 1 7 7 N 1.31519 * 119.99804 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47018 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47295 * 119.99510 * 8 6 4 11 11 H 1.48502 * 109.47229 * 239.99609 * 8 6 4 12 12 C 1.52999 * 109.47133 * 120.00434 * 2 1 3 13 13 N 1.46503 * 109.46678 * 299.99823 * 12 2 1 14 14 C 1.34785 * 119.99911 * 180.02562 * 13 12 2 15 15 O 1.21763 * 119.99734 * 5.00643 * 14 13 12 16 16 C 1.46258 * 120.00103 * 185.01455 * 14 13 12 17 17 C 1.33473 * 122.20886 * 174.35130 * 16 14 13 18 18 S 1.75723 * 109.85831 * 180.02562 * 17 16 14 19 19 C 1.75944 * 91.05405 * 0.02562 * 18 17 16 20 20 C 1.36283 * 142.80110 * 179.97438 * 19 18 17 21 21 N 1.33745 * 107.82073 * 180.02562 * 20 19 18 22 22 C 1.30362 * 109.45770 * 0.02562 * 21 20 19 23 23 N 1.35920 * 109.81873 * 359.97438 * 19 18 17 24 24 H 1.08996 * 109.47410 * 299.99716 * 1 2 3 25 25 H 1.09001 * 109.47415 * 60.00010 * 1 2 3 26 26 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46892 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47492 * 299.99977 * 3 2 1 29 29 H 1.08997 * 109.47243 * 60.00216 * 3 2 1 30 30 H 0.97004 * 119.99836 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47334 * 180.02562 * 12 2 1 32 32 H 1.08997 * 109.47329 * 59.99684 * 12 2 1 33 33 H 0.96994 * 120.00373 * 0.02562 * 13 12 2 34 34 H 1.07996 * 125.07066 * 0.04651 * 17 16 14 35 35 H 1.08007 * 126.09294 * 0.04238 * 20 19 18 36 36 H 1.07994 * 125.57199 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3225 -1.1195 -4.0080 9 1 3.1483 -2.2857 -3.6038 10 1 1.1677 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8161 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.6511 -1.4245 3.7829 16 6 1.3023 0.1310 4.8617 17 6 1.5063 -0.3567 6.0873 18 16 0.6694 0.6357 7.2716 19 6 0.0649 1.6958 6.0041 20 6 -0.6956 2.8059 5.7884 21 7 -0.7119 3.0414 4.4719 22 6 -0.0020 2.1354 3.8599 23 7 0.5080 1.2656 4.7933 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7082 1.1610 -3.4844 31 1 3.1300 -0.7210 1.2494 32 1 1.6767 -1.7490 1.2492 33 1 0.9937 0.7577 2.3564 34 1 2.0977 -1.2306 6.3169 35 1 -1.1959 3.3915 6.5456 36 1 0.1595 2.0783 2.7936 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457995556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:58 Heat of formation + Delta-G solvation = 61.390741 kcal Electronic energy + Delta-G solvation = -21290.817426 eV Core-core repulsion = 18096.391522 eV Total energy + Delta-G solvation = -3194.425904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.93404 -39.68999 -36.88563 -36.10488 -33.62561 -31.08794 -30.59306 -29.69552 -26.41610 -25.85904 -25.41304 -24.01138 -22.41050 -21.69942 -20.59988 -18.91508 -18.83124 -16.89760 -16.38027 -15.98820 -15.65714 -15.35013 -14.89281 -14.82945 -14.65314 -14.24108 -13.71226 -13.27702 -13.08953 -13.02165 -12.30307 -12.10740 -11.74916 -11.52476 -11.31982 -10.96943 -10.74457 -10.56555 -10.52177 -10.45592 -10.33245 -10.13415 -9.77971 -9.62373 -9.46617 -8.90757 -8.75879 -8.45737 -7.68484 -6.10090 -4.20859 0.40302 0.83188 1.25970 1.58254 2.24042 2.74901 3.12011 3.22962 3.30312 3.32698 3.38344 4.20648 4.32841 4.37516 4.69775 4.94064 5.10029 5.17038 5.29356 5.64974 5.98844 6.12823 6.13648 6.33317 6.49085 6.65759 6.66917 6.74634 6.80912 6.87696 7.21322 7.43281 7.54725 7.59619 7.66278 7.89223 8.00470 8.15413 8.29694 8.79458 9.45739 10.91547 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.029132 B = 0.004037 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.919715 B = 6934.407150 C = 7697.470364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 C -0.132 4.132 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.128 3.872 13 N -0.706 5.706 14 C 0.568 3.432 15 O -0.527 6.527 16 C 0.032 3.968 17 C -0.141 4.141 18 S 0.168 5.832 19 C -0.099 4.099 20 C 0.022 3.978 21 N -0.443 5.443 22 C 0.194 3.806 23 N -0.399 5.399 24 H 0.002 0.998 25 H 0.089 0.911 26 H 0.029 0.971 27 H 0.030 0.970 28 H 0.090 0.910 29 H 0.001 0.999 30 H 0.261 0.739 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.394 0.606 34 H 0.203 0.797 35 H 0.184 0.816 36 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 1.674 17.108 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.054 3.946 3 C -0.190 4.190 4 C -0.546 4.546 5 H 0.078 0.922 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.007 3.993 13 N -0.358 5.358 14 C 0.350 3.650 15 O -0.405 6.405 16 C -0.081 4.081 17 C -0.281 4.281 18 S 0.427 5.573 19 C -0.324 4.324 20 C -0.136 4.136 21 N -0.157 5.157 22 C -0.088 4.088 23 N -0.079 5.079 24 H 0.021 0.979 25 H 0.108 0.892 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.108 0.892 29 H 0.020 0.980 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.233 0.767 34 H 0.220 0.780 35 H 0.201 0.799 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -2.038 1.633 17.969 18.157 hybrid contribution 0.581 -0.662 -2.018 2.202 sum -1.457 0.971 15.950 16.046 Atomic orbital electron populations 1.21868 0.97607 0.99416 1.00113 1.18406 0.92888 0.92846 0.90468 1.21869 0.98861 0.98179 1.00066 1.20956 1.31767 1.12249 0.89645 0.92234 1.24881 0.94748 0.94887 0.98924 1.69800 1.36416 1.22657 1.23343 0.86490 0.78668 0.79728 0.82859 1.19740 1.20998 1.20996 1.21941 0.98768 0.95954 0.82685 1.46535 1.51837 1.31425 1.06009 1.17004 0.81980 0.83759 0.82212 1.90876 1.34807 1.28657 1.86122 1.19405 1.00932 0.90612 0.97197 1.25755 1.04069 1.05074 0.93239 1.84449 1.50202 1.19689 1.02971 1.24551 1.11728 1.06204 0.89905 1.21835 1.02891 0.95723 0.93192 1.70200 1.17646 1.22505 1.05332 1.25424 0.99025 0.88137 0.96223 1.44246 1.35259 1.20158 1.08264 0.97936 0.89194 0.95165 0.95123 0.89182 0.97995 0.92893 0.91842 0.91969 0.76743 0.77983 0.79908 0.76880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 2 C 0.05 1.21 0.50 -155.66 -0.08 1.14 16 3 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 4 C -0.51 -12.80 8.01 -34.44 -0.28 -13.08 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -22.89 9.35 55.43 0.52 -22.37 16 8 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.13 2.59 4.51 -4.04 -0.02 2.57 16 13 N -0.71 -12.29 4.95 -61.74 -0.31 -12.59 16 14 C 0.57 9.60 7.74 -13.03 -0.10 9.50 16 15 O -0.53 -10.10 16.60 5.13 0.09 -10.01 16 16 C 0.03 0.45 6.70 -83.21 -0.56 -0.11 16 17 C -0.14 -1.58 10.62 29.07 0.31 -1.27 16 18 S 0.17 1.57 23.33 -107.50 -2.51 -0.94 16 19 C -0.10 -1.22 7.81 -16.44 -0.13 -1.35 16 20 C 0.02 0.27 11.93 -17.42 -0.21 0.06 16 21 N -0.44 -6.38 11.22 -13.83 -0.16 -6.53 16 22 C 0.19 2.76 11.91 -88.29 -1.05 1.71 16 23 N -0.40 -5.53 3.20 -60.40 -0.19 -5.72 16 24 H 0.00 0.03 6.86 -51.93 -0.36 -0.32 16 25 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 29 H 0.00 0.02 6.86 -51.93 -0.36 -0.34 16 30 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.39 6.38 2.48 -40.82 -0.10 6.28 16 34 H 0.20 1.88 7.94 -52.49 -0.42 1.46 16 35 H 0.18 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.22 2.85 6.02 -52.49 -0.32 2.53 16 LS Contribution 309.53 15.07 4.66 4.66 Total: -1.00 -28.10 309.53 -8.35 -36.45 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -3.83 Total: 6.24 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.60 Total: -4.37 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.14 Total: -47.22 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.51 Total: -0.94 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.10 -8.35 -36.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457995556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.840 kcal (2) G-P(sol) polarization free energy of solvation -28.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds