Wall clock time and date at job start Tue Mar 31 2020 07:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47007 * 2 1 4 4 C 1.50701 * 109.46945 * 240.00012 * 2 1 3 5 5 H 1.08003 * 120.00108 * 239.99576 * 4 2 1 6 6 C 1.37873 * 120.00113 * 60.00445 * 4 2 1 7 7 N 1.31519 * 119.99804 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47018 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47295 * 119.99510 * 8 6 4 11 11 H 1.48502 * 109.47229 * 239.99609 * 8 6 4 12 12 C 1.52999 * 109.47133 * 120.00434 * 2 1 3 13 13 N 1.46503 * 109.46678 * 299.99823 * 12 2 1 14 14 C 1.34785 * 119.99911 * 180.02562 * 13 12 2 15 15 O 1.21763 * 119.99734 * 5.00643 * 14 13 12 16 16 C 1.46258 * 120.00103 * 185.01455 * 14 13 12 17 17 C 1.33473 * 122.20886 * 174.35130 * 16 14 13 18 18 S 1.75723 * 109.85831 * 180.02562 * 17 16 14 19 19 C 1.75944 * 91.05405 * 0.02562 * 18 17 16 20 20 C 1.36283 * 142.80110 * 179.97438 * 19 18 17 21 21 N 1.33745 * 107.82073 * 180.02562 * 20 19 18 22 22 C 1.30362 * 109.45770 * 0.02562 * 21 20 19 23 23 N 1.35920 * 109.81873 * 359.97438 * 19 18 17 24 24 H 1.08996 * 109.47410 * 299.99716 * 1 2 3 25 25 H 1.09001 * 109.47415 * 60.00010 * 1 2 3 26 26 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46892 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47492 * 299.99977 * 3 2 1 29 29 H 1.08997 * 109.47243 * 60.00216 * 3 2 1 30 30 H 0.97004 * 119.99836 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47334 * 180.02562 * 12 2 1 32 32 H 1.08997 * 109.47329 * 59.99684 * 12 2 1 33 33 H 0.96994 * 120.00373 * 0.02562 * 13 12 2 34 34 H 1.07996 * 125.07066 * 0.04651 * 17 16 14 35 35 H 1.08007 * 126.09294 * 0.04238 * 20 19 18 36 36 H 1.07994 * 125.57199 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3225 -1.1195 -4.0080 9 1 3.1483 -2.2857 -3.6038 10 1 1.1677 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8161 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.6511 -1.4245 3.7829 16 6 1.3023 0.1310 4.8617 17 6 1.5063 -0.3567 6.0873 18 16 0.6694 0.6357 7.2716 19 6 0.0649 1.6958 6.0041 20 6 -0.6956 2.8059 5.7884 21 7 -0.7119 3.0414 4.4719 22 6 -0.0020 2.1354 3.8599 23 7 0.5080 1.2656 4.7933 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7082 1.1610 -3.4844 31 1 3.1300 -0.7210 1.2494 32 1 1.6767 -1.7490 1.2492 33 1 0.9937 0.7577 2.3564 34 1 2.0977 -1.2306 6.3169 35 1 -1.1959 3.3915 6.5456 36 1 0.1595 2.0783 2.7936 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457995556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:57 Heat of formation + Delta-G solvation = 46.157109 kcal Electronic energy + Delta-G solvation = -21291.478006 eV Core-core repulsion = 18096.391522 eV Total energy + Delta-G solvation = -3195.086484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.90307 -41.01954 -38.43311 -37.26304 -35.24574 -32.87378 -31.58150 -30.69277 -27.88673 -27.64560 -27.24711 -25.28524 -23.48483 -22.75899 -21.73536 -20.65616 -19.93356 -18.11280 -17.69924 -17.42573 -17.02374 -16.69263 -16.26992 -16.20535 -15.92131 -15.27598 -14.82634 -14.67463 -14.62207 -14.57400 -13.97699 -13.33966 -13.16808 -13.08697 -12.73891 -12.61494 -12.58009 -12.32469 -12.15749 -11.59232 -11.56455 -11.55155 -11.34593 -11.21355 -10.75836 -10.62024 -10.43603 -10.19151 -8.53580 -8.04177 -6.20273 -0.58244 -0.02758 0.34030 0.55852 1.27156 1.41886 1.46548 1.55215 1.71821 1.93611 2.03980 2.46300 3.13331 3.20172 3.40319 3.70328 3.96898 4.23374 4.31054 4.40050 4.42523 4.62051 4.66656 4.88606 4.94416 4.99458 5.11048 5.12932 5.26819 5.43326 5.60330 5.65563 5.71534 6.07822 6.13386 6.28191 6.38691 6.62250 6.80261 6.87232 7.48042 8.95244 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.029132 B = 0.004037 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.919715 B = 6934.407150 C = 7697.470364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.123 4.123 4 C -0.526 4.526 5 H 0.050 0.950 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.947 3.053 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.144 3.856 13 N -0.707 5.707 14 C 0.572 3.428 15 O -0.556 6.556 16 C -0.008 4.008 17 C -0.120 4.120 18 S 0.258 5.742 19 C -0.119 4.119 20 C 0.017 3.983 21 N -0.463 5.463 22 C 0.170 3.830 23 N -0.399 5.399 24 H 0.027 0.973 25 H 0.066 0.934 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.260 0.740 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.400 0.600 34 H 0.223 0.777 35 H 0.214 0.786 36 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.255 1.660 19.605 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 C -0.180 4.180 4 C -0.565 4.565 5 H 0.068 0.932 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.774 3.226 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.021 3.979 13 N -0.359 5.359 14 C 0.357 3.643 15 O -0.436 6.436 16 C -0.121 4.121 17 C -0.261 4.261 18 S 0.519 5.481 19 C -0.343 4.343 20 C -0.141 4.141 21 N -0.178 5.178 22 C -0.112 4.112 23 N -0.079 5.079 24 H 0.046 0.954 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.240 0.760 34 H 0.239 0.761 35 H 0.231 0.769 36 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.290 1.637 20.487 20.679 hybrid contribution 0.645 -0.665 -2.594 2.755 sum -1.644 0.972 17.892 17.994 Atomic orbital electron populations 1.21704 0.97202 0.98940 1.00164 1.18392 0.93168 0.93025 0.90488 1.21709 0.98280 0.97883 1.00173 1.21241 1.31814 1.12272 0.91160 0.93221 1.25458 0.95074 0.95545 1.01042 1.69912 1.36895 1.23305 1.23643 0.85681 0.78081 0.78732 0.80151 1.19776 1.20854 1.20878 1.21505 0.97883 0.95403 0.83146 1.46368 1.52237 1.31656 1.05682 1.17288 0.81222 0.83199 0.82624 1.90850 1.36129 1.29984 1.86640 1.19002 1.04011 0.92318 0.96755 1.26257 1.01921 1.04774 0.93173 1.84262 1.47436 1.16672 0.99769 1.25114 1.11768 1.06823 0.90645 1.22390 1.02798 0.95988 0.92958 1.70172 1.18051 1.22909 1.06679 1.25397 1.00303 0.89014 0.96468 1.44215 1.35049 1.19926 1.08748 0.95361 0.91568 0.95817 0.95829 0.91539 0.95338 0.92989 0.93033 0.92965 0.76024 0.76054 0.76936 0.77104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 2 C 0.05 2.25 0.50 -52.93 -0.03 2.23 16 3 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 4 C -0.53 -27.03 8.01 25.60 0.21 -26.83 16 5 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 6 C 0.03 1.49 5.15 84.65 0.44 1.92 16 7 N -0.90 -47.25 9.35 21.45 0.20 -47.04 16 8 Si 0.95 41.84 29.54 68.60 2.03 43.86 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 C 0.14 5.88 4.51 86.38 0.39 6.27 16 13 N -0.71 -24.55 4.95 -467.44 -2.31 -26.87 16 14 C 0.57 19.02 7.74 86.33 0.67 19.68 16 15 O -0.56 -21.12 16.60 -4.55 -0.08 -21.19 16 16 C -0.01 -0.20 6.70 39.07 0.26 0.06 16 17 C -0.12 -2.32 10.62 66.74 0.71 -1.61 16 18 S 0.26 3.77 23.33 -56.49 -1.32 2.45 16 19 C -0.12 -2.61 7.81 83.60 0.65 -1.96 16 20 C 0.02 0.37 11.93 83.95 1.00 1.38 16 21 N -0.46 -12.87 11.22 -197.66 -2.22 -15.09 16 22 C 0.17 4.73 11.91 179.53 2.14 6.87 16 23 N -0.40 -10.46 3.20 -345.00 -1.10 -11.56 16 24 H 0.03 1.05 6.86 -2.39 -0.02 1.03 16 25 H 0.07 3.24 6.07 -2.39 -0.01 3.23 16 26 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 3.26 6.07 -2.39 -0.01 3.24 16 29 H 0.03 1.05 6.86 -2.39 -0.02 1.04 16 30 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 31 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.40 12.86 2.48 -92.71 -0.23 12.63 16 34 H 0.22 3.33 7.94 -2.91 -0.02 3.31 16 35 H 0.21 3.06 8.06 -2.91 -0.02 3.03 16 36 H 0.21 5.66 6.02 -2.91 -0.02 5.64 16 Total: -1.00 -60.76 309.53 3.69 -57.07 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.89 Total: 19.94 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 7.60 Total: -1.58 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -5.44 Total: -100.56 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.08 Total: -21.19 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.32 Total: 2.45 kcal Total: -60.76 3.69 -57.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457995556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.230 kcal (2) G-P(sol) polarization free energy of solvation -60.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds