Wall clock time and date at job start Tue Mar 31 2020 07:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46728 * 106.28987 * 3 2 1 5 5 C 1.37091 * 119.99696 * 264.13658 * 4 3 2 6 6 H 1.08007 * 119.99412 * 197.43710 * 5 4 3 7 7 C 1.38950 * 120.00405 * 17.43782 * 5 4 3 8 8 N 1.31411 * 119.99561 * 21.52621 * 7 5 4 9 9 Si 1.86803 * 120.00121 * 201.52032 * 7 5 4 10 10 H 1.48498 * 109.46848 * 90.00350 * 9 7 5 11 11 H 1.48494 * 109.47147 * 210.00260 * 9 7 5 12 12 H 1.48501 * 109.47192 * 330.00397 * 9 7 5 13 13 C 1.34775 * 119.99852 * 84.14378 * 4 3 2 14 14 O 1.21297 * 119.99913 * 179.97438 * 13 4 3 15 15 C 1.50706 * 120.00066 * 359.97438 * 13 4 3 16 16 C 1.50704 * 109.46943 * 180.02562 * 15 13 4 17 17 C 1.38254 * 119.99927 * 270.02259 * 16 15 13 18 18 C 1.38210 * 120.00018 * 179.97438 * 17 16 15 19 19 C 1.38259 * 119.99943 * 359.96064 * 18 17 16 20 20 C 1.38210 * 119.99786 * 0.06588 * 19 18 17 21 21 C 1.50702 * 119.99889 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.47188 * 119.94851 * 21 20 19 23 23 F 1.39894 * 109.47442 * 239.95398 * 21 20 19 24 24 C 1.38213 * 119.99785 * 89.99938 * 16 15 13 25 25 H 4.40642 * 5.51370 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47043 * 346.28719 * 3 2 1 27 27 H 1.09000 * 109.46968 * 226.28719 * 3 2 1 28 28 H 0.97004 * 119.99453 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.46619 * 60.00557 * 15 13 4 30 30 H 1.08995 * 109.47193 * 300.00525 * 15 13 4 31 31 H 1.07998 * 120.00049 * 359.97438 * 17 16 15 32 32 H 1.07995 * 120.00138 * 179.97438 * 18 17 16 33 33 H 1.07998 * 120.00087 * 180.02562 * 19 18 17 34 34 H 1.09008 * 109.47205 * 359.95285 * 21 20 19 35 35 H 1.08000 * 119.99952 * 359.72692 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1341 0.3883 -1.3258 5 6 3.4773 -0.5753 -2.2386 6 1 4.0897 -0.3184 -3.0904 7 6 3.0374 -1.8822 -2.0679 8 7 1.9861 -2.1290 -1.3190 9 14 3.9402 -3.2882 -2.9031 10 1 5.0086 -3.7937 -2.0042 11 1 2.9831 -4.3842 -3.1996 12 1 4.5465 -2.8044 -4.1695 13 6 3.2458 1.6922 -1.6481 14 8 3.6504 2.0132 -2.7456 15 6 2.8681 2.7514 -0.6447 16 6 3.0832 4.1152 -1.2490 17 6 4.3050 4.7474 -1.1111 18 6 4.5024 5.9979 -1.6657 19 6 3.4784 6.6161 -2.3590 20 6 2.2569 5.9843 -2.4963 21 6 1.1405 6.6584 -3.2516 22 9 0.7657 5.8620 -4.3390 23 9 0.0429 6.8347 -2.4024 24 6 2.0593 4.7335 -1.9413 25 1 -1.0501 0.0001 0.0002 26 1 3.0098 -0.9975 0.2436 27 1 3.0090 0.7110 0.7428 28 1 1.6788 -3.0413 -1.2002 29 1 3.4882 2.6461 0.2454 30 1 1.8190 2.6363 -0.3725 31 1 5.1051 4.2642 -0.5701 32 1 5.4566 6.4920 -1.5576 33 1 3.6328 7.5931 -2.7927 34 1 1.4804 7.6293 -3.6124 35 1 1.1064 4.2375 -2.0531 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490961601.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:26 Heat of formation + Delta-G solvation = -44.826340 kcal Electronic energy + Delta-G solvation = -22731.580067 eV Core-core repulsion = 18946.415107 eV Total energy + Delta-G solvation = -3785.164960 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.097 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.90913 -46.89790 -39.52873 -38.26791 -35.20231 -32.94391 -32.05192 -31.44732 -31.21529 -27.82209 -26.37211 -25.99142 -24.40866 -22.08209 -21.27432 -19.07537 -17.90638 -17.29073 -17.12925 -16.96292 -16.62637 -16.16208 -15.95993 -15.07584 -14.60872 -14.35525 -14.00493 -13.91385 -13.83583 -13.27544 -12.94314 -12.82887 -12.76365 -12.64713 -12.31300 -12.01839 -11.79984 -11.64562 -11.38821 -11.07512 -10.88138 -10.69734 -10.48785 -10.30980 -9.39504 -9.28823 -8.92409 -8.87406 -8.74208 -8.30843 -7.88207 -6.34449 -3.86886 1.28582 1.50994 3.14314 3.25175 3.29724 3.63407 3.75155 3.78817 3.90384 4.02621 4.17537 4.18878 4.55501 4.91201 5.00085 5.04632 5.08733 5.10490 5.20682 5.44350 5.49942 5.57069 5.71809 5.81137 5.91335 6.11989 6.14365 6.31223 6.43883 6.48354 6.71617 6.79056 7.00917 7.04146 7.55785 8.03322 8.41139 8.78620 9.12409 9.34010 9.89080 10.66468 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.004227 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.794615 B = 6622.660404 C = 6871.493149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.116 4.116 3 C 0.231 3.769 4 N -0.441 5.441 5 C -0.315 4.315 6 H 0.104 0.896 7 C 0.031 3.969 8 N -0.862 5.862 9 Si 0.921 3.079 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.453 3.547 14 O -0.575 6.575 15 C -0.102 4.102 16 C -0.043 4.043 17 C -0.086 4.086 18 C -0.123 4.123 19 C -0.097 4.097 20 C -0.173 4.173 21 C 0.315 3.685 22 F -0.199 7.199 23 F -0.203 7.203 24 C -0.065 4.065 25 H 0.199 0.801 26 H 0.110 0.890 27 H 0.062 0.938 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 14.006 4.150 14.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.117 4.117 3 C 0.107 3.893 4 N -0.159 5.159 5 C -0.442 4.442 6 H 0.122 0.878 7 C -0.173 4.173 8 N -0.500 5.500 9 Si 0.748 3.252 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.242 3.758 14 O -0.458 6.458 15 C -0.142 4.142 16 C -0.043 4.043 17 C -0.104 4.104 18 C -0.141 4.141 19 C -0.116 4.116 20 C -0.174 4.174 21 C 0.261 3.739 22 F -0.180 7.180 23 F -0.184 7.184 24 C -0.083 4.083 25 H 0.216 0.784 26 H 0.128 0.872 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.079 13.950 3.635 14.456 hybrid contribution -0.199 -1.104 -0.398 1.190 sum 0.880 12.847 3.237 13.277 Atomic orbital electron populations 1.24298 0.95401 1.05498 1.02581 1.23186 0.94369 0.96196 0.97961 1.18278 0.84291 1.01789 0.84892 1.43710 1.56097 1.04259 1.11883 1.19670 1.30200 0.87080 1.07254 0.87811 1.25284 0.95149 0.99001 0.97863 1.70092 1.19668 1.21020 1.39255 0.86005 0.79160 0.80338 0.79720 1.20332 1.21112 1.19420 1.19848 0.84660 0.83021 0.88304 1.90558 1.50621 1.81040 1.23595 1.20720 1.03564 0.91098 0.98806 1.19448 0.93402 0.94660 0.96820 1.21139 0.96310 0.94510 0.98414 1.21002 0.98728 0.95637 0.98761 1.20772 0.92175 0.99596 0.99020 1.20210 0.95692 0.97453 1.04064 1.20378 0.81581 0.93883 0.78066 1.93036 1.92406 1.77005 1.55530 1.92997 1.57276 1.96098 1.72049 1.20799 0.99504 0.93193 0.94782 0.78372 0.87183 0.91996 0.92138 0.89210 0.89002 0.85706 0.85618 0.85803 0.86815 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.31 19.25 29.55 0.57 -4.75 16 2 C -0.12 -2.54 10.87 -37.12 -0.40 -2.95 16 3 C 0.23 4.96 4.91 -6.83 -0.03 4.93 16 4 N -0.44 -10.93 2.60 -117.93 -0.31 -11.24 16 5 C -0.31 -8.59 9.33 -14.94 -0.14 -8.73 16 6 H 0.10 3.01 7.39 -52.48 -0.39 2.62 16 7 C 0.03 0.81 4.87 -17.47 -0.08 0.72 16 8 N -0.86 -22.49 9.48 55.50 0.53 -21.97 16 9 Si 0.92 20.41 29.60 -169.99 -5.03 15.38 16 10 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 C 0.45 10.79 7.56 -10.98 -0.08 10.71 16 14 O -0.57 -15.80 15.68 5.54 0.09 -15.72 16 15 C -0.10 -1.84 4.44 -29.03 -0.13 -1.97 16 16 C -0.04 -0.74 4.37 -104.62 -0.46 -1.19 16 17 C -0.09 -1.27 9.70 -39.59 -0.38 -1.66 16 18 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 19 C -0.10 -1.19 9.67 -39.58 -0.38 -1.57 16 20 C -0.17 -2.50 5.37 -104.63 -0.56 -3.06 16 21 C 0.31 3.96 5.45 36.01 0.20 4.16 16 22 F -0.20 -3.07 17.26 2.25 0.04 -3.03 16 23 F -0.20 -2.79 17.26 2.25 0.04 -2.75 16 24 C -0.06 -1.10 9.25 -39.58 -0.37 -1.47 16 25 H 0.20 3.34 7.80 -54.09 -0.42 2.92 16 26 H 0.11 2.50 6.44 -51.93 -0.33 2.17 16 27 H 0.06 1.08 6.69 -51.93 -0.35 0.73 16 28 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.09 1.36 7.36 -51.93 -0.38 0.97 16 30 H 0.09 1.62 7.45 -51.93 -0.39 1.23 16 31 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.12 1.06 7.95 -52.49 -0.42 0.64 16 34 H 0.11 0.94 7.88 -51.92 -0.41 0.53 16 35 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 319.71 15.07 4.82 4.82 Total: -1.00 -32.53 319.71 -5.98 -38.51 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.49 Total: 4.77 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.66 Total: -8.77 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.22 Total: -33.20 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.09 Total: -15.72 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.08 Total: -5.78 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.53 -5.98 -38.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961601.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.317 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds