Wall clock time and date at job start Tue Mar 31 2020 07:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46728 * 106.28987 * 3 2 1 5 5 C 1.37091 * 119.99696 * 264.13658 * 4 3 2 6 6 H 1.08007 * 119.99412 * 197.43710 * 5 4 3 7 7 C 1.38950 * 120.00405 * 17.43782 * 5 4 3 8 8 N 1.31411 * 119.99561 * 21.52621 * 7 5 4 9 9 Si 1.86803 * 120.00121 * 201.52032 * 7 5 4 10 10 H 1.48498 * 109.46848 * 90.00350 * 9 7 5 11 11 H 1.48494 * 109.47147 * 210.00260 * 9 7 5 12 12 H 1.48501 * 109.47192 * 330.00397 * 9 7 5 13 13 C 1.34775 * 119.99852 * 84.14378 * 4 3 2 14 14 O 1.21297 * 119.99913 * 179.97438 * 13 4 3 15 15 C 1.50706 * 120.00066 * 359.97438 * 13 4 3 16 16 C 1.50704 * 109.46943 * 180.02562 * 15 13 4 17 17 C 1.38254 * 119.99927 * 270.02259 * 16 15 13 18 18 C 1.38210 * 120.00018 * 179.97438 * 17 16 15 19 19 C 1.38259 * 119.99943 * 359.96064 * 18 17 16 20 20 C 1.38210 * 119.99786 * 0.06588 * 19 18 17 21 21 C 1.50702 * 119.99889 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.47188 * 119.94851 * 21 20 19 23 23 F 1.39894 * 109.47442 * 239.95398 * 21 20 19 24 24 C 1.38213 * 119.99785 * 89.99938 * 16 15 13 25 25 H 4.40642 * 5.51370 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47043 * 346.28719 * 3 2 1 27 27 H 1.09000 * 109.46968 * 226.28719 * 3 2 1 28 28 H 0.97004 * 119.99453 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.46619 * 60.00557 * 15 13 4 30 30 H 1.08995 * 109.47193 * 300.00525 * 15 13 4 31 31 H 1.07998 * 120.00049 * 359.97438 * 17 16 15 32 32 H 1.07995 * 120.00138 * 179.97438 * 18 17 16 33 33 H 1.07998 * 120.00087 * 180.02562 * 19 18 17 34 34 H 1.09008 * 109.47205 * 359.95285 * 21 20 19 35 35 H 1.08000 * 119.99952 * 359.72692 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1341 0.3883 -1.3258 5 6 3.4773 -0.5753 -2.2386 6 1 4.0897 -0.3184 -3.0904 7 6 3.0374 -1.8822 -2.0679 8 7 1.9861 -2.1290 -1.3190 9 14 3.9402 -3.2882 -2.9031 10 1 5.0086 -3.7937 -2.0042 11 1 2.9831 -4.3842 -3.1996 12 1 4.5465 -2.8044 -4.1695 13 6 3.2458 1.6922 -1.6481 14 8 3.6504 2.0132 -2.7456 15 6 2.8681 2.7514 -0.6447 16 6 3.0832 4.1152 -1.2490 17 6 4.3050 4.7474 -1.1111 18 6 4.5024 5.9979 -1.6657 19 6 3.4784 6.6161 -2.3590 20 6 2.2569 5.9843 -2.4963 21 6 1.1405 6.6584 -3.2516 22 9 0.7657 5.8620 -4.3390 23 9 0.0429 6.8347 -2.4024 24 6 2.0593 4.7335 -1.9413 25 1 -1.0501 0.0001 0.0002 26 1 3.0098 -0.9975 0.2436 27 1 3.0090 0.7110 0.7428 28 1 1.6788 -3.0413 -1.2002 29 1 3.4882 2.6461 0.2454 30 1 1.8190 2.6363 -0.3725 31 1 5.1051 4.2642 -0.5701 32 1 5.4566 6.4920 -1.5576 33 1 3.6328 7.5931 -2.7927 34 1 1.4804 7.6293 -3.6124 35 1 1.1064 4.2375 -2.0531 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490961601.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:25 Heat of formation + Delta-G solvation = -62.914990 kcal Electronic energy + Delta-G solvation = -22732.364450 eV Core-core repulsion = 18946.415107 eV Total energy + Delta-G solvation = -3785.949342 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.097 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.95645 -47.96883 -40.94867 -39.78169 -37.07739 -34.39114 -33.73264 -33.03397 -32.53375 -29.29154 -28.08745 -27.03694 -26.22955 -23.22523 -22.47402 -20.72990 -19.70403 -18.44464 -18.28077 -18.18810 -18.10052 -17.91131 -17.05162 -16.51030 -16.42118 -15.98822 -15.56210 -15.12142 -14.92964 -14.53048 -14.36077 -14.30699 -14.06952 -14.01101 -13.86239 -13.51402 -13.33732 -12.95748 -12.82215 -12.77504 -12.44738 -12.19316 -12.02863 -11.72223 -11.18811 -11.11845 -10.67105 -10.41008 -9.95731 -9.83660 -9.67940 -8.32629 -5.93155 0.19723 0.39622 1.35832 1.41721 1.52754 1.88100 2.12995 2.31716 2.36862 2.64341 2.82539 3.03883 3.27198 3.29864 3.56214 3.84940 3.86988 4.00535 4.09383 4.16761 4.19360 4.33024 4.42233 4.57302 4.65174 4.71406 4.94178 4.97870 5.04175 5.36890 5.40667 5.42843 5.46840 5.61983 5.96752 6.06973 6.44422 7.12035 7.14869 7.41863 7.99065 8.65831 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.004227 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.794615 B = 6622.660404 C = 6871.493149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.153 4.153 3 C 0.232 3.768 4 N -0.453 5.453 5 C -0.351 4.351 6 H 0.073 0.927 7 C 0.003 3.997 8 N -0.873 5.873 9 Si 0.983 3.017 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.445 3.555 14 O -0.622 6.622 15 C -0.087 4.087 16 C -0.073 4.073 17 C -0.098 4.098 18 C -0.119 4.119 19 C -0.085 4.085 20 C -0.186 4.186 21 C 0.309 3.691 22 F -0.221 7.221 23 F -0.213 7.213 24 C -0.096 4.096 25 H 0.231 0.769 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.272 0.728 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.137 0.863 32 H 0.164 0.836 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.716 15.647 4.784 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.155 4.155 3 C 0.110 3.890 4 N -0.172 5.172 5 C -0.479 4.479 6 H 0.091 0.909 7 C -0.200 4.200 8 N -0.510 5.510 9 Si 0.807 3.193 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.235 3.765 14 O -0.509 6.509 15 C -0.127 4.127 16 C -0.073 4.073 17 C -0.116 4.116 18 C -0.137 4.137 19 C -0.103 4.103 20 C -0.186 4.186 21 C 0.256 3.744 22 F -0.202 7.202 23 F -0.194 7.194 24 C -0.115 4.115 25 H 0.247 0.753 26 H 0.112 0.888 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.110 0.890 31 H 0.155 0.845 32 H 0.182 0.818 33 H 0.190 0.810 34 H 0.188 0.812 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.780 15.584 4.313 16.268 hybrid contribution -0.455 -1.561 -0.604 1.735 sum 1.325 14.023 3.709 14.566 Atomic orbital electron populations 1.25146 0.96407 1.04112 1.01065 1.23517 0.95091 0.97516 0.99340 1.18369 0.84419 1.02035 0.84171 1.43917 1.56141 1.04413 1.12681 1.19541 1.31628 0.88793 1.07925 0.90917 1.25955 0.95414 1.00343 0.98327 1.70185 1.19829 1.21554 1.39409 0.85092 0.78325 0.77348 0.78495 1.18686 1.20434 1.20480 1.20804 0.83173 0.83686 0.88817 1.90504 1.52521 1.81895 1.25945 1.20597 1.03874 0.90020 0.98173 1.19483 0.94815 0.94456 0.98543 1.21427 0.95578 0.95726 0.98892 1.21502 1.00393 0.94604 0.97183 1.21330 0.90575 1.01029 0.97382 1.20548 0.97492 0.96713 1.03887 1.20971 0.80663 0.95563 0.77202 1.92990 1.92589 1.78040 1.56575 1.92972 1.57871 1.96119 1.72451 1.20822 0.98880 0.95017 0.96747 0.75264 0.88793 0.88021 0.91836 0.86148 0.89036 0.84494 0.81799 0.81042 0.81219 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.04 19.25 74.32 1.43 -8.61 16 2 C -0.15 -6.75 10.87 31.13 0.34 -6.42 16 3 C 0.23 10.09 4.91 84.57 0.42 10.51 16 4 N -0.45 -23.20 2.60 -645.39 -1.68 -24.88 16 5 C -0.35 -19.97 9.33 84.04 0.78 -19.18 16 6 H 0.07 4.48 7.39 -2.91 -0.02 4.46 16 7 C 0.00 0.16 4.87 84.93 0.41 0.57 16 8 N -0.87 -45.82 9.48 21.66 0.21 -45.61 16 9 Si 0.98 42.40 29.60 68.60 2.03 44.43 16 10 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 C 0.44 21.96 7.56 87.66 0.66 22.62 16 14 O -0.62 -35.89 15.68 -3.08 -0.05 -35.94 16 15 C -0.09 -3.19 4.44 29.11 0.13 -3.06 16 16 C -0.07 -2.51 4.37 -19.87 -0.09 -2.60 16 17 C -0.10 -2.78 9.70 22.27 0.22 -2.57 16 18 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 19 C -0.09 -1.77 9.67 22.27 0.22 -1.56 16 20 C -0.19 -5.09 5.37 -19.87 -0.11 -5.20 16 21 C 0.31 7.24 5.45 71.24 0.39 7.63 16 22 F -0.22 -6.79 17.26 44.97 0.78 -6.01 16 23 F -0.21 -5.67 17.26 44.97 0.78 -4.89 16 24 C -0.10 -3.36 9.25 22.27 0.21 -3.16 16 25 H 0.23 7.31 7.80 -4.41 -0.03 7.28 16 26 H 0.09 4.34 6.44 -2.39 -0.02 4.32 16 27 H 0.10 3.47 6.69 -2.39 -0.02 3.46 16 28 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 29 H 0.12 3.54 7.36 -2.39 -0.02 3.52 16 30 H 0.09 3.31 7.45 -2.39 -0.02 3.30 16 31 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 32 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.17 1.88 7.95 -2.91 -0.02 1.86 16 34 H 0.17 2.07 7.88 -2.38 -0.02 2.05 16 35 H 0.10 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -74.93 319.71 8.41 -66.52 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 1.12 Total: 19.78 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 5.23 Total: -13.40 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -1.47 Total: -70.49 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.05 Total: -35.94 kcal Atomic # 9 Polarization: -12.45 SS G_CDS: 1.55 Total: -10.90 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -74.93 8.41 -66.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961601.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.607 kcal (2) G-P(sol) polarization free energy of solvation -74.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds