Wall clock time and date at job start Tue Mar 31 2020 07:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47073 * 15.79562 * 3 2 1 5 5 C 1.37102 * 119.99959 * 268.93916 * 4 3 2 6 6 H 1.07996 * 119.99785 * 190.01414 * 5 4 3 7 7 C 1.38954 * 119.99856 * 10.01920 * 5 4 3 8 8 N 1.31418 * 120.00118 * 24.61752 * 7 5 4 9 9 Si 1.86796 * 119.99739 * 204.62062 * 7 5 4 10 10 H 1.48496 * 109.47464 * 60.00051 * 9 7 5 11 11 H 1.48501 * 109.46964 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47304 * 299.99823 * 9 7 5 13 13 C 1.34772 * 119.99931 * 88.94384 * 4 3 2 14 14 O 1.21296 * 120.00012 * 179.97438 * 13 4 3 15 15 C 1.50700 * 119.99973 * 359.97438 * 13 4 3 16 16 F 1.39906 * 109.47035 * 85.00353 * 15 13 4 17 17 F 1.39899 * 109.47395 * 325.00294 * 15 13 4 18 18 C 1.53004 * 109.46904 * 205.00093 * 15 13 4 19 19 C 1.50702 * 109.46929 * 180.02562 * 18 15 13 20 20 C 1.38231 * 120.00455 * 89.99930 * 19 18 15 21 21 C 1.38227 * 120.00616 * 179.97438 * 20 19 18 22 22 C 1.38241 * 119.99916 * 359.97438 * 21 20 19 23 23 C 1.38235 * 119.99567 * 0.28269 * 22 21 20 24 24 C 1.38236 * 120.00308 * 359.50431 * 23 22 21 25 25 H 4.40644 * 5.51379 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.47296 * 255.79692 * 3 2 1 27 27 H 1.09001 * 109.47484 * 135.79416 * 3 2 1 28 28 H 0.96996 * 119.99606 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47270 * 60.00302 * 18 15 13 30 30 H 1.08996 * 109.46869 * 299.99903 * 18 15 13 31 31 H 1.08010 * 119.99855 * 359.97438 * 20 19 18 32 32 H 1.08000 * 120.00548 * 180.02562 * 21 20 19 33 33 H 1.07991 * 120.00386 * 180.02562 * 22 21 20 34 34 H 1.08005 * 119.99979 * 179.72342 * 23 22 21 35 35 H 1.08000 * 120.00186 * 180.27438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3282 -0.3760 5 6 3.3846 -2.2661 0.5924 6 1 3.8943 -3.1834 0.3371 7 6 2.9817 -2.0365 1.9022 8 7 1.9835 -1.2180 2.1488 9 14 3.8589 -2.8912 3.3126 10 1 5.2941 -2.5099 3.3067 11 1 3.2426 -2.4812 4.6000 12 1 3.7370 -4.3625 3.1525 13 6 3.3394 -1.6287 -1.6738 14 8 3.7446 -2.7288 -1.9851 15 6 3.0645 -0.5979 -2.7382 16 9 4.1856 0.2250 -2.8910 17 9 1.9636 0.1789 -2.3620 18 6 2.7637 -1.3011 -4.0634 19 6 2.4894 -0.2703 -5.1280 20 6 3.5280 0.2263 -5.8933 21 6 3.2764 1.1714 -6.8701 22 6 1.9860 1.6196 -7.0822 23 6 0.9482 1.1270 -6.3133 24 6 1.1991 0.1786 -5.3394 25 1 -1.0498 -0.0004 0.0001 26 1 3.0092 0.2530 0.9962 27 1 3.0091 0.7375 -0.7165 28 1 1.7025 -1.0575 3.0632 29 1 1.8903 -1.9423 -3.9445 30 1 3.6215 -1.9062 -4.3565 31 1 4.5362 -0.1242 -5.7279 32 1 4.0878 1.5590 -7.4683 33 1 1.7893 2.3576 -7.8456 34 1 -0.0594 1.4804 -6.4759 35 1 0.3876 -0.2096 -4.7417 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491021728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:08 Heat of formation + Delta-G solvation = -27.851908 kcal Electronic energy + Delta-G solvation = -23717.571088 eV Core-core repulsion = 19933.142195 eV Total energy + Delta-G solvation = -3784.428893 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.097 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.57882 -46.49204 -39.12502 -38.50845 -35.53713 -33.15076 -32.16849 -31.34306 -30.82452 -28.83633 -26.66279 -25.53991 -23.51415 -22.50140 -21.06911 -19.81223 -18.03422 -17.40581 -17.15631 -16.58921 -16.40846 -16.05139 -15.18284 -14.97266 -14.84935 -14.32083 -13.97767 -13.63385 -13.46404 -13.28498 -13.00594 -12.82067 -12.80420 -12.35690 -12.30035 -12.09341 -11.95624 -11.72856 -11.29477 -11.01541 -10.91393 -10.82967 -10.64681 -10.42902 -9.40743 -9.32761 -8.93500 -8.84730 -8.78659 -8.47546 -8.13480 -6.54885 -4.02717 1.36420 1.47675 2.99545 3.16248 3.18527 3.36167 3.64409 3.81671 4.04371 4.11615 4.28722 4.46487 4.78976 4.81185 4.90893 4.99341 5.05906 5.18470 5.20757 5.43102 5.56674 5.59780 5.63771 5.92383 5.95641 6.14015 6.15357 6.25765 6.50624 6.54828 6.69398 6.71579 7.04040 7.05611 7.36689 7.72274 8.16701 8.85382 8.88549 9.08628 9.56058 10.42532 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.029602 B = 0.004771 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.651005 B = 5867.449423 C = 6398.467030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.098 4.098 3 C 0.222 3.778 4 N -0.404 5.404 5 C -0.322 4.322 6 H 0.113 0.887 7 C 0.038 3.962 8 N -0.842 5.842 9 Si 0.928 3.072 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.393 3.607 14 O -0.564 6.564 15 C 0.290 3.710 16 F -0.196 7.196 17 F -0.186 7.186 18 C -0.103 4.103 19 C -0.087 4.087 20 C -0.103 4.103 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.101 4.101 25 H 0.199 0.801 26 H 0.111 0.889 27 H 0.069 0.931 28 H 0.274 0.726 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.087 6.164 -11.088 12.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.100 4.100 3 C 0.100 3.900 4 N -0.119 5.119 5 C -0.449 4.449 6 H 0.131 0.869 7 C -0.170 4.170 8 N -0.478 5.478 9 Si 0.753 3.247 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.195 1.195 13 C 0.178 3.822 14 O -0.449 6.449 15 C 0.250 3.750 16 F -0.177 7.177 17 F -0.167 7.167 18 C -0.141 4.141 19 C -0.087 4.087 20 C -0.121 4.121 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.141 4.141 24 C -0.119 4.119 25 H 0.216 0.784 26 H 0.128 0.872 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.977 5.745 -11.011 12.458 hybrid contribution -0.076 -0.060 0.901 0.906 sum -1.053 5.685 -10.110 11.646 Atomic orbital electron populations 1.24143 0.95227 1.02125 1.06463 1.22682 0.93833 0.98231 0.95238 1.18586 0.85193 0.84152 1.02104 1.43852 1.52188 1.11606 1.04258 1.19791 1.36649 1.02077 0.86393 0.86946 1.25403 0.94861 0.97555 0.99134 1.70166 1.20622 1.35252 1.21747 0.85975 0.79823 0.79785 0.79109 1.19499 1.20748 1.19514 1.19882 0.90225 0.88777 0.83296 1.90565 1.52022 1.22327 1.80015 1.21398 0.73489 0.83776 0.96290 1.92994 1.53151 1.74854 1.96684 1.93052 1.54180 1.77191 1.92231 1.21341 1.06202 0.96682 0.89890 1.19736 0.93898 0.98049 0.97032 1.21113 0.98843 0.96859 0.95253 1.21102 0.96842 0.97788 0.98459 1.21130 0.93109 1.00100 0.99771 1.21112 0.99130 0.97527 0.96324 1.21136 0.96380 0.96956 0.97445 0.78415 0.87159 0.91268 0.91481 0.87884 0.87144 0.85789 0.86129 0.86328 0.86107 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.58 19.25 29.55 0.57 -5.02 16 2 C -0.10 -2.29 9.37 -37.12 -0.35 -2.64 16 3 C 0.22 5.19 4.75 -6.82 -0.03 5.15 16 4 N -0.40 -10.36 2.59 -117.93 -0.31 -10.67 16 5 C -0.32 -8.69 9.41 -14.93 -0.14 -8.83 16 6 H 0.11 3.15 7.32 -52.49 -0.38 2.76 16 7 C 0.04 0.95 4.88 -17.46 -0.09 0.86 16 8 N -0.84 -21.39 9.22 55.50 0.51 -20.87 16 9 Si 0.93 19.66 29.62 -169.99 -5.03 14.63 16 10 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 C 0.39 9.67 7.08 -10.99 -0.08 9.59 16 14 O -0.56 -15.09 15.70 5.54 0.09 -15.00 16 15 C 0.29 5.92 1.35 -27.88 -0.04 5.89 16 16 F -0.20 -3.92 16.28 2.25 0.04 -3.88 16 17 F -0.19 -3.81 11.81 2.25 0.03 -3.79 16 18 C -0.10 -1.78 4.47 -27.88 -0.12 -1.90 16 19 C -0.09 -1.33 4.74 -104.62 -0.50 -1.82 16 20 C -0.10 -1.42 9.42 -39.59 -0.37 -1.79 16 21 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 22 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 23 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 24 C -0.10 -1.43 9.42 -39.58 -0.37 -1.80 16 25 H 0.20 3.45 7.80 -54.10 -0.42 3.03 16 26 H 0.11 2.64 6.33 -51.93 -0.33 2.31 16 27 H 0.07 1.48 5.95 -51.93 -0.31 1.17 16 28 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 29 H 0.10 1.74 8.09 -51.93 -0.42 1.32 16 30 H 0.11 1.86 7.81 -51.93 -0.41 1.46 16 31 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 312.72 15.07 4.71 4.71 Total: -1.00 -29.80 312.72 -6.20 -35.99 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -3.52 Total: 6.73 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -2.71 Total: -7.85 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.21 Total: -31.54 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.09 Total: -15.00 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 0.06 Total: -7.67 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.80 -6.20 -35.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491021728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.139 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds