Wall clock time and date at job start Tue Mar 31 2020 07:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47073 * 15.79562 * 3 2 1 5 5 C 1.37102 * 119.99959 * 268.93916 * 4 3 2 6 6 H 1.07996 * 119.99785 * 190.01414 * 5 4 3 7 7 C 1.38954 * 119.99856 * 10.01920 * 5 4 3 8 8 N 1.31418 * 120.00118 * 24.61752 * 7 5 4 9 9 Si 1.86796 * 119.99739 * 204.62062 * 7 5 4 10 10 H 1.48496 * 109.47464 * 60.00051 * 9 7 5 11 11 H 1.48501 * 109.46964 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47304 * 299.99823 * 9 7 5 13 13 C 1.34772 * 119.99931 * 88.94384 * 4 3 2 14 14 O 1.21296 * 120.00012 * 179.97438 * 13 4 3 15 15 C 1.50700 * 119.99973 * 359.97438 * 13 4 3 16 16 F 1.39906 * 109.47035 * 85.00353 * 15 13 4 17 17 F 1.39899 * 109.47395 * 325.00294 * 15 13 4 18 18 C 1.53004 * 109.46904 * 205.00093 * 15 13 4 19 19 C 1.50702 * 109.46929 * 180.02562 * 18 15 13 20 20 C 1.38231 * 120.00455 * 89.99930 * 19 18 15 21 21 C 1.38227 * 120.00616 * 179.97438 * 20 19 18 22 22 C 1.38241 * 119.99916 * 359.97438 * 21 20 19 23 23 C 1.38235 * 119.99567 * 0.28269 * 22 21 20 24 24 C 1.38236 * 120.00308 * 359.50431 * 23 22 21 25 25 H 4.40644 * 5.51379 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.47296 * 255.79692 * 3 2 1 27 27 H 1.09001 * 109.47484 * 135.79416 * 3 2 1 28 28 H 0.96996 * 119.99606 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47270 * 60.00302 * 18 15 13 30 30 H 1.08996 * 109.46869 * 299.99903 * 18 15 13 31 31 H 1.08010 * 119.99855 * 359.97438 * 20 19 18 32 32 H 1.08000 * 120.00548 * 180.02562 * 21 20 19 33 33 H 1.07991 * 120.00386 * 180.02562 * 22 21 20 34 34 H 1.08005 * 119.99979 * 179.72342 * 23 22 21 35 35 H 1.08000 * 120.00186 * 180.27438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3282 -0.3760 5 6 3.3846 -2.2661 0.5924 6 1 3.8943 -3.1834 0.3371 7 6 2.9817 -2.0365 1.9022 8 7 1.9835 -1.2180 2.1488 9 14 3.8589 -2.8912 3.3126 10 1 5.2941 -2.5099 3.3067 11 1 3.2426 -2.4812 4.6000 12 1 3.7370 -4.3625 3.1525 13 6 3.3394 -1.6287 -1.6738 14 8 3.7446 -2.7288 -1.9851 15 6 3.0645 -0.5979 -2.7382 16 9 4.1856 0.2250 -2.8910 17 9 1.9636 0.1789 -2.3620 18 6 2.7637 -1.3011 -4.0634 19 6 2.4894 -0.2703 -5.1280 20 6 3.5280 0.2263 -5.8933 21 6 3.2764 1.1714 -6.8701 22 6 1.9860 1.6196 -7.0822 23 6 0.9482 1.1270 -6.3133 24 6 1.1991 0.1786 -5.3394 25 1 -1.0498 -0.0004 0.0001 26 1 3.0092 0.2530 0.9962 27 1 3.0091 0.7375 -0.7165 28 1 1.7025 -1.0575 3.0632 29 1 1.8903 -1.9423 -3.9445 30 1 3.6215 -1.9062 -4.3565 31 1 4.5362 -0.1242 -5.7279 32 1 4.0878 1.5590 -7.4683 33 1 1.7893 2.3576 -7.8456 34 1 -0.0594 1.4804 -6.4759 35 1 0.3876 -0.2096 -4.7417 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491021728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:07 Heat of formation + Delta-G solvation = -42.679550 kcal Electronic energy + Delta-G solvation = -23718.214063 eV Core-core repulsion = 19933.142195 eV Total energy + Delta-G solvation = -3785.071868 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.097 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.23376 -48.14414 -40.48316 -40.07534 -37.44927 -34.38402 -34.09523 -33.18483 -31.78333 -30.20863 -28.51165 -27.27205 -25.13919 -23.46852 -22.24465 -21.55964 -19.89792 -19.10375 -18.79377 -18.33854 -17.77677 -17.50650 -16.94170 -16.19421 -15.99829 -15.92131 -15.78266 -15.45195 -15.09560 -14.50397 -14.40015 -14.27325 -14.16503 -14.10400 -13.92434 -13.58075 -13.49271 -13.28103 -12.87567 -12.64721 -12.55422 -12.16986 -11.97595 -11.88268 -11.31356 -11.11934 -10.74515 -10.51875 -10.08708 -9.81536 -9.68245 -8.48653 -6.06955 0.34895 0.50849 1.18617 1.40765 1.50868 1.59204 1.89967 2.26014 2.34219 2.48237 2.77494 2.87884 2.93993 3.28337 3.53075 3.55640 3.82152 3.93625 4.03116 4.16593 4.30918 4.40572 4.47556 4.59254 4.70900 4.77035 4.80781 5.07157 5.16845 5.34123 5.36493 5.55857 5.61094 5.67108 5.75195 6.10904 6.18587 6.87349 7.09873 7.15644 7.60424 8.47400 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.029602 B = 0.004771 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.651005 B = 5867.449423 C = 6398.467030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.143 4.143 3 C 0.227 3.773 4 N -0.414 5.414 5 C -0.364 4.364 6 H 0.090 0.910 7 C 0.012 3.988 8 N -0.852 5.852 9 Si 0.994 3.006 10 H -0.266 1.266 11 H -0.268 1.268 12 H -0.273 1.273 13 C 0.377 3.623 14 O -0.597 6.597 15 C 0.301 3.699 16 F -0.193 7.193 17 F -0.184 7.184 18 C -0.094 4.094 19 C -0.109 4.109 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.117 4.117 25 H 0.236 0.764 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.281 0.719 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.956 7.614 -11.757 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.145 4.145 3 C 0.105 3.895 4 N -0.129 5.129 5 C -0.491 4.491 6 H 0.107 0.893 7 C -0.195 4.195 8 N -0.486 5.486 9 Si 0.816 3.184 10 H -0.191 1.191 11 H -0.192 1.192 12 H -0.198 1.198 13 C 0.164 3.836 14 O -0.485 6.485 15 C 0.262 3.738 16 F -0.174 7.174 17 F -0.165 7.165 18 C -0.132 4.132 19 C -0.109 4.109 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.135 4.135 25 H 0.252 0.748 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.143 0.857 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.864 7.228 -11.681 13.862 hybrid contribution 0.125 -0.460 1.093 1.193 sum -1.739 6.768 -10.588 12.686 Atomic orbital electron populations 1.25055 0.96192 1.00080 1.04456 1.22889 0.94360 1.00114 0.97109 1.18527 0.85864 0.83341 1.01726 1.44087 1.52043 1.12165 1.04603 1.19779 1.38810 1.02519 0.87965 0.89264 1.26165 0.94830 0.98044 1.00480 1.70230 1.20548 1.35247 1.22576 0.85008 0.78759 0.78410 0.76261 1.19093 1.19193 1.19779 1.20630 0.89579 0.89529 0.83886 1.90518 1.53267 1.23961 1.80757 1.21171 0.73458 0.82988 0.96226 1.92988 1.53172 1.74665 1.96620 1.93043 1.54080 1.77054 1.92366 1.21243 1.05861 0.97108 0.88960 1.19624 0.95096 0.98709 0.97439 1.21274 0.98616 0.97700 0.95967 1.21459 0.98220 0.96753 0.97754 1.21573 0.92444 0.99813 0.99673 1.21450 1.00817 0.96567 0.95419 1.21256 0.95830 0.97950 0.98497 0.74765 0.88294 0.90073 0.90867 0.88257 0.87457 0.85700 0.83384 0.82964 0.83581 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.89 19.25 74.32 1.43 -8.46 16 2 C -0.14 -6.65 9.37 31.13 0.29 -6.36 16 3 C 0.23 10.82 4.75 84.57 0.40 11.22 16 4 N -0.41 -21.97 2.59 -645.40 -1.67 -23.64 16 5 C -0.36 -20.33 9.41 84.04 0.79 -19.53 16 6 H 0.09 5.27 7.32 -2.91 -0.02 5.25 16 7 C 0.01 0.58 4.88 84.93 0.41 1.00 16 8 N -0.85 -43.06 9.22 21.67 0.20 -42.86 16 9 Si 0.99 40.31 29.62 68.60 2.03 42.34 16 10 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 11 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 13 C 0.38 19.30 7.08 87.66 0.62 19.92 16 14 O -0.60 -33.54 15.70 -3.08 -0.05 -33.59 16 15 C 0.30 12.59 1.35 29.85 0.04 12.63 16 16 F -0.19 -7.86 16.28 44.97 0.73 -7.13 16 17 F -0.18 -7.64 11.81 44.97 0.53 -7.11 16 18 C -0.09 -3.32 4.47 29.85 0.13 -3.19 16 19 C -0.11 -3.28 4.74 -19.86 -0.09 -3.38 16 20 C -0.12 -3.13 9.42 22.27 0.21 -2.92 16 21 C -0.12 -2.61 10.05 22.27 0.22 -2.39 16 22 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 23 C -0.12 -2.69 10.05 22.27 0.22 -2.47 16 24 C -0.12 -3.20 9.42 22.27 0.21 -2.99 16 25 H 0.24 7.46 7.80 -4.43 -0.03 7.42 16 26 H 0.10 4.84 6.33 -2.39 -0.02 4.83 16 27 H 0.08 3.55 5.95 -2.39 -0.01 3.54 16 28 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 29 H 0.10 3.51 8.09 -2.39 -0.02 3.49 16 30 H 0.11 3.79 7.81 -2.39 -0.02 3.77 16 31 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.15 1.88 8.06 -2.92 -0.02 1.86 16 34 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.12 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -65.16 312.72 8.01 -57.16 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 1.11 Total: 23.77 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.12 Total: -8.93 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: -1.47 Total: -66.50 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.05 Total: -33.59 kcal Atomic # 9 Polarization: -15.50 SS G_CDS: 1.26 Total: -14.24 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -65.16 8.01 -57.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491021728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.476 kcal (2) G-P(sol) polarization free energy of solvation -65.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds