Wall clock time and date at job start Tue Mar 31 2020 07:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47064 * 2 1 4 4 N 1.46499 * 109.47091 * 180.02562 * 3 2 1 5 5 C 1.36730 * 119.99809 * 264.38958 * 4 3 2 6 6 H 1.07994 * 119.99447 * 142.59725 * 5 4 3 7 7 C 1.39115 * 120.00331 * 322.59950 * 5 4 3 8 8 N 1.31322 * 120.00112 * 159.26444 * 7 5 4 9 9 Si 1.86804 * 119.99747 * 339.26460 * 7 5 4 10 10 H 1.48500 * 109.46855 * 95.26150 * 9 7 5 11 11 H 1.48497 * 109.47013 * 215.26287 * 9 7 5 12 12 H 1.48501 * 109.47218 * 335.26155 * 9 7 5 13 13 C 1.34775 * 120.00093 * 84.39297 * 4 3 2 14 14 O 1.21765 * 120.00111 * 179.97438 * 13 4 3 15 15 C 1.46183 * 119.99803 * 0.27600 * 13 4 3 16 16 C 1.35018 * 120.00035 * 172.60820 * 15 13 4 17 17 C 1.47094 * 119.99860 * 349.09727 * 16 15 13 18 18 C 1.39904 * 120.16035 * 316.16001 * 17 16 15 19 19 C 1.37827 * 119.83523 * 179.77092 * 18 17 16 20 20 C 1.38557 * 120.16021 * 0.50588 * 19 18 17 21 21 Cl 1.73603 * 119.83641 * 179.76818 * 20 19 18 22 22 C 1.38553 * 120.32668 * 359.74076 * 20 19 18 23 23 C 1.37823 * 120.15926 * 0.02562 * 22 20 19 24 24 H 1.09000 * 109.46651 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46776 * 299.99369 * 1 2 3 26 26 H 1.08995 * 109.47206 * 60.00172 * 1 2 3 27 27 H 1.08996 * 109.47321 * 240.00490 * 2 1 3 28 28 H 1.08998 * 109.47657 * 119.99603 * 2 1 3 29 29 H 1.09010 * 109.46818 * 59.99896 * 3 2 1 30 30 H 1.09001 * 109.47281 * 300.00233 * 3 2 1 31 31 H 0.97005 * 120.00090 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.00420 * 352.60396 * 15 13 4 33 33 H 1.08002 * 119.99858 * 169.09201 * 16 15 13 34 34 H 1.07997 * 120.07941 * 359.97438 * 18 17 16 35 35 H 1.07998 * 119.91637 * 180.25313 * 19 18 17 36 36 H 1.07998 * 119.92310 * 179.97438 * 22 20 19 37 37 H 1.08009 * 120.08389 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1891 1.5581 1.1776 6 1 5.1026 1.0021 1.3283 7 6 3.7085 2.3919 2.1821 8 7 4.0966 2.2148 3.4241 9 14 2.5110 3.7634 1.7643 10 1 1.1207 3.2916 1.9873 11 1 2.7807 4.9375 2.6325 12 1 2.6798 4.1513 0.3408 13 6 4.1784 1.3287 -1.1625 14 8 5.3961 1.3292 -1.1631 15 6 3.4470 1.2113 -2.4227 16 6 4.1137 1.2474 -3.5962 17 6 5.5305 1.6420 -3.6252 18 6 5.9701 2.7391 -2.8766 19 6 7.3000 3.1000 -2.9050 20 6 8.1987 2.3856 -3.6807 21 17 9.8708 2.8513 -3.7149 22 6 7.7697 1.3011 -4.4287 23 6 6.4438 0.9257 -4.4064 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6766 1.9564 0.8901 30 1 1.6767 1.9564 -0.8900 31 1 3.7617 2.7964 4.1246 32 1 2.3732 1.0955 -2.4152 33 1 3.6069 0.9866 -4.5135 34 1 5.2697 3.2997 -2.2754 35 1 7.6415 3.9441 -2.3244 36 1 8.4758 0.7492 -5.0314 37 1 6.1108 0.0798 -4.9897 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491237779.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:43 Heat of formation + Delta-G solvation = -0.284371 kcal Electronic energy + Delta-G solvation = -21124.404655 eV Core-core repulsion = 17892.967860 eV Total energy + Delta-G solvation = -3231.436795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.02792 -39.78749 -37.61542 -37.09411 -34.92389 -34.28427 -33.29178 -31.94539 -30.47082 -27.72194 -26.93210 -24.50592 -23.57204 -22.76283 -22.26361 -19.70325 -18.94587 -18.43499 -17.88416 -17.31551 -16.33417 -16.19674 -15.85541 -15.46010 -15.23476 -14.96523 -14.63877 -14.45263 -14.30376 -14.05563 -13.93986 -13.75842 -13.33144 -13.10725 -12.63156 -12.52783 -12.49208 -12.41645 -12.15378 -12.07386 -11.86178 -11.73615 -11.49614 -11.03616 -10.64620 -10.35469 -9.87096 -9.55913 -8.91162 -8.53787 -6.11003 -0.23012 0.50964 0.90147 1.16699 1.18441 1.31143 1.39973 2.14300 2.49028 2.77421 2.85666 3.06953 3.85160 3.89993 3.95367 4.00906 4.09414 4.19306 4.41643 4.42874 4.49993 4.61037 4.63996 4.68214 4.84666 4.99957 5.05244 5.10607 5.19909 5.27064 5.30950 5.35010 5.45575 5.47430 5.57694 5.75927 5.96015 6.05029 6.60070 6.96873 7.33470 7.95513 8.63673 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018209 B = 0.004868 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.332748 B = 5750.182960 C = 6763.486591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.082 3.918 4 N -0.468 5.468 5 C -0.323 4.323 6 H 0.041 0.959 7 C 0.011 3.989 8 N -0.910 5.910 9 Si 0.946 3.054 10 H -0.240 1.240 11 H -0.291 1.291 12 H -0.256 1.256 13 C 0.472 3.528 14 O -0.595 6.595 15 C -0.200 4.200 16 C -0.038 4.038 17 C -0.068 4.068 18 C -0.035 4.035 19 C -0.144 4.144 20 C -0.038 4.038 21 Cl -0.079 7.079 22 C -0.128 4.128 23 C -0.091 4.091 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.279 0.721 32 H 0.162 0.838 33 H 0.185 0.815 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.154 0.846 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.495 -0.889 -17.662 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C -0.040 4.040 4 N -0.188 5.188 5 C -0.452 4.452 6 H 0.059 0.941 7 C -0.191 4.191 8 N -0.548 5.548 9 Si 0.769 3.231 10 H -0.165 1.165 11 H -0.218 1.218 12 H -0.179 1.179 13 C 0.265 3.735 14 O -0.481 6.481 15 C -0.221 4.221 16 C -0.058 4.058 17 C -0.068 4.068 18 C -0.054 4.054 19 C -0.163 4.163 20 C -0.065 4.065 21 Cl -0.050 7.050 22 C -0.147 4.147 23 C -0.109 4.109 24 H 0.089 0.911 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.179 0.821 33 H 0.202 0.798 34 H 0.117 0.883 35 H 0.138 0.862 36 H 0.171 0.829 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.764 -0.799 -17.399 18.057 hybrid contribution 0.355 0.726 1.280 1.514 sum -4.409 -0.072 -16.119 16.711 Atomic orbital electron populations 1.21709 0.92831 1.02909 1.02622 1.21863 0.97695 0.95480 1.01993 1.22203 0.80472 0.98930 1.02389 1.43818 1.05490 1.64275 1.05229 1.18561 1.08881 1.26292 0.91420 0.94084 1.26169 0.99770 0.99115 0.94047 1.69831 1.45891 1.38284 1.00776 0.85875 0.79535 0.78359 0.79328 1.16478 1.21849 1.17943 1.19157 0.87780 0.81390 0.85159 1.90734 1.15290 1.55062 1.87020 1.23342 1.01333 1.06202 0.91200 1.22691 0.91344 0.93179 0.98604 1.19301 0.95309 0.95354 0.96861 1.21015 0.94864 0.96153 0.93391 1.20883 0.93301 1.01609 1.00481 1.21078 0.84836 0.98829 1.01752 1.98328 1.16890 1.92015 1.97774 1.21116 0.97110 0.96086 1.00386 1.21486 0.91755 0.99456 0.98235 0.91108 0.93359 0.90247 0.90716 0.94268 0.92398 0.88246 0.91113 0.82077 0.79804 0.88278 0.86181 0.82877 0.81793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.91 71.98 0.71 -2.44 16 2 C -0.13 -4.07 6.06 30.60 0.19 -3.88 16 3 C 0.08 3.01 3.61 86.38 0.31 3.32 16 4 N -0.47 -22.20 2.19 -640.60 -1.40 -23.61 16 5 C -0.32 -18.95 9.37 84.14 0.79 -18.16 16 6 H 0.04 2.86 7.90 -2.91 -0.02 2.83 16 7 C 0.01 0.63 5.30 84.98 0.45 1.08 16 8 N -0.91 -54.67 13.95 21.69 0.30 -54.37 16 9 Si 0.95 41.86 24.93 68.60 1.71 43.57 16 10 H -0.24 -9.26 6.69 99.48 0.67 -8.59 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 13 C 0.47 21.12 6.55 86.31 0.57 21.68 16 14 O -0.60 -31.32 12.03 -4.56 -0.05 -31.38 16 15 C -0.20 -6.10 8.62 23.59 0.20 -5.90 16 16 C -0.04 -0.97 9.81 23.85 0.23 -0.74 16 17 C -0.07 -2.12 4.53 -20.15 -0.09 -2.21 16 18 C -0.04 -1.32 6.60 22.58 0.15 -1.17 16 19 C -0.14 -5.17 9.81 22.25 0.22 -4.95 16 20 C -0.04 -1.21 6.33 22.42 0.14 -1.07 16 21 Cl -0.08 -2.22 28.95 -2.72 -0.08 -2.30 16 22 C -0.13 -3.47 9.81 22.25 0.22 -3.25 16 23 C -0.09 -2.38 9.80 22.58 0.22 -2.16 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.12 8.14 -2.38 -0.02 1.11 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 2.09 7.41 -2.39 -0.02 2.07 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 2.29 3.42 -2.38 -0.01 2.28 16 30 H 0.10 2.86 6.52 -2.39 -0.02 2.84 16 31 H 0.28 15.39 8.31 -92.70 -0.77 14.62 16 32 H 0.16 3.63 6.02 -2.91 -0.02 3.61 16 33 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.10 4.07 7.03 -2.91 -0.02 4.05 16 35 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 36 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -74.43 320.46 5.82 -68.61 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 1.03 Total: 19.33 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 4.31 Total: -19.85 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -1.10 Total: -77.98 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.05 Total: -31.38 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.71 Total: 43.57 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.08 Total: -2.30 kcal Total: -74.43 5.82 -68.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491237779.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.324 kcal (2) G-P(sol) polarization free energy of solvation -74.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds