Wall clock time and date at job start Tue Mar 31 2020 07:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47205 * 2 1 4 4 N 1.46501 * 109.47079 * 180.02562 * 3 2 1 5 5 C 1.36708 * 119.99912 * 270.82931 * 4 3 2 6 6 H 1.08001 * 119.99789 * 141.64765 * 5 4 3 7 7 C 1.39119 * 120.00209 * 321.65105 * 5 4 3 8 8 N 1.31324 * 119.99737 * 339.30639 * 7 5 4 9 9 Si 1.86804 * 120.00313 * 159.31628 * 7 5 4 10 10 H 1.48502 * 109.46754 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47606 * 119.99529 * 9 7 5 12 12 H 1.48505 * 109.46667 * 239.99725 * 9 7 5 13 13 C 1.34779 * 119.99864 * 90.83563 * 4 3 2 14 14 O 1.21761 * 120.00003 * 359.97438 * 13 4 3 15 15 C 1.46224 * 119.99704 * 180.27735 * 13 4 3 16 16 C 1.34986 * 120.00008 * 172.61709 * 15 13 4 17 17 C 1.47146 * 119.99580 * 349.18968 * 16 15 13 18 18 C 1.39897 * 120.16442 * 136.38553 * 17 16 15 19 19 C 1.37858 * 119.85103 * 179.97438 * 18 17 16 20 20 C 1.38417 * 120.18795 * 359.97438 * 19 18 17 21 21 C 1.38504 * 120.34020 * 359.97438 * 20 19 18 22 22 Cl 1.73597 * 119.92944 * 180.02562 * 21 20 19 23 23 C 1.38028 * 120.14493 * 359.78553 * 21 20 19 24 24 H 1.09005 * 109.47039 * 299.99933 * 1 2 3 25 25 H 1.09002 * 109.47078 * 59.99756 * 1 2 3 26 26 H 1.08997 * 109.47296 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46874 * 240.00417 * 2 1 3 28 28 H 1.09000 * 109.47556 * 120.00049 * 2 1 3 29 29 H 1.08999 * 109.47127 * 59.99674 * 3 2 1 30 30 H 1.09000 * 109.46904 * 300.00448 * 3 2 1 31 31 H 0.97004 * 120.00028 * 180.02562 * 8 7 5 32 32 H 1.07996 * 120.00394 * 352.60946 * 15 13 4 33 33 H 1.07993 * 119.99724 * 169.18947 * 16 15 13 34 34 H 1.08001 * 120.07594 * 359.95201 * 18 17 16 35 35 H 1.07997 * 119.90968 * 180.02562 * 19 18 17 36 36 H 1.07997 * 119.83169 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.09522 * 180.25983 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1891 1.4252 1.1829 6 1 5.0943 0.8434 1.2749 7 6 3.7191 2.1569 2.2688 8 7 2.8910 3.1579 2.0770 9 14 4.2662 1.7158 3.9996 10 1 5.1936 0.5572 3.9453 11 1 4.9602 2.8777 4.6107 12 1 3.0792 1.3612 4.8186 13 6 4.1784 1.4597 -1.1680 14 8 3.5692 1.4747 -2.2221 15 6 5.6407 1.4535 -1.1687 16 6 6.3145 1.3203 -2.3307 17 6 5.5961 0.9451 -3.5588 18 6 5.8723 1.6012 -4.7631 19 6 5.1957 1.2441 -5.9100 20 6 4.2453 0.2385 -5.8728 21 6 3.9665 -0.4171 -4.6850 22 17 2.7729 -1.6772 -4.6507 23 6 4.6390 -0.0741 -3.5295 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9563 -0.8899 31 1 2.5635 3.6683 2.8341 32 1 6.1816 1.5556 -0.2395 33 1 7.3808 1.4893 -2.3590 34 1 6.6135 2.3861 -4.7943 35 1 5.4085 1.7497 -6.8402 36 1 3.7185 -0.0364 -6.7746 37 1 4.4240 -0.5886 -2.6047 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491238780.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:47 Heat of formation + Delta-G solvation = 4.080858 kcal Electronic energy + Delta-G solvation = -21292.959231 eV Core-core repulsion = 18061.711727 eV Total energy + Delta-G solvation = -3231.247504 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.30959 -38.16527 -36.07556 -35.27697 -33.15813 -32.70520 -31.41522 -30.26548 -29.12300 -26.07302 -24.86979 -23.12693 -22.03911 -21.18851 -20.04864 -18.84279 -17.23855 -16.30539 -15.93360 -15.10067 -14.96894 -14.65268 -14.28873 -14.00069 -13.73613 -13.34539 -13.17155 -12.96026 -12.73765 -12.32586 -12.02110 -11.62617 -11.46006 -11.32957 -11.19674 -11.04544 -11.03336 -10.97678 -10.71397 -10.44801 -10.34820 -10.32422 -9.76212 -9.41289 -9.16450 -8.59232 -8.19199 -7.54576 -7.48427 -6.49289 -4.16119 1.27633 1.75650 2.39500 2.61247 3.05128 3.14815 3.18035 3.98904 4.18358 4.37838 4.77075 4.95389 5.17892 5.21791 5.42867 5.60407 5.73411 5.78069 5.83928 5.92599 6.06033 6.12265 6.23333 6.37344 6.49402 6.53150 6.63931 6.65465 6.68990 6.76195 6.80433 6.97679 7.05656 7.15957 7.26189 7.31058 7.42452 7.85798 8.27218 8.96410 9.44696 9.89972 10.49932 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.005337 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.970490 B = 5244.928306 C = 6271.725844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.112 3.888 4 N -0.418 5.418 5 C -0.341 4.341 6 H 0.092 0.908 7 C 0.046 3.954 8 N -0.849 5.849 9 Si 0.914 3.086 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.475 3.525 14 O -0.592 6.592 15 C -0.136 4.136 16 C -0.106 4.106 17 C -0.024 4.024 18 C -0.110 4.110 19 C -0.127 4.127 20 C -0.117 4.117 21 C -0.045 4.045 22 Cl -0.089 7.089 23 C -0.016 4.016 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.272 0.728 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.298 -4.833 -7.494 9.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C -0.012 4.012 4 N -0.133 5.133 5 C -0.469 4.469 6 H 0.109 0.891 7 C -0.162 4.162 8 N -0.484 5.484 9 Si 0.740 3.260 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.267 3.733 14 O -0.480 6.480 15 C -0.157 4.157 16 C -0.127 4.127 17 C -0.025 4.025 18 C -0.128 4.128 19 C -0.146 4.146 20 C -0.135 4.135 21 C -0.071 4.071 22 Cl -0.060 7.060 23 C -0.035 4.035 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.721 -4.776 -7.812 9.552 hybrid contribution 0.030 -0.044 1.195 1.196 sum 2.751 -4.820 -6.617 8.636 Atomic orbital electron populations 1.21652 0.96565 1.00482 1.01357 1.21789 0.94707 0.99142 1.01312 1.21451 0.81454 0.94822 1.03470 1.43459 1.04958 1.60161 1.04681 1.19466 1.10620 1.28595 0.88220 0.89072 1.25467 0.96726 0.93394 1.00581 1.69907 1.31239 1.15077 1.32164 0.86089 0.78894 0.78890 0.82172 1.18974 1.20570 1.20348 1.18470 0.87865 0.82670 0.84321 1.90723 1.69895 1.56749 1.30607 1.23366 0.95508 0.98920 0.97879 1.22034 0.98428 1.00855 0.91395 1.18757 0.95777 0.94874 0.93085 1.21209 1.00204 0.99389 0.92005 1.20751 0.97513 0.98055 0.98259 1.20883 0.99172 0.97141 0.96347 1.20609 0.95740 0.95156 0.95600 1.98324 1.57012 1.51807 1.98894 1.20966 0.91925 0.95076 0.95552 0.93054 0.93122 0.93594 0.92911 0.92316 0.88083 0.92492 0.91810 0.84983 0.85675 0.86164 0.86051 0.86104 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.91 37.16 0.37 -2.07 16 2 C -0.13 -2.67 6.26 -26.73 -0.17 -2.84 16 3 C 0.11 2.63 5.02 -4.04 -0.02 2.61 16 4 N -0.42 -10.22 2.50 -116.47 -0.29 -10.51 16 5 C -0.34 -8.29 8.35 -15.05 -0.13 -8.42 16 6 H 0.09 2.11 6.91 -52.49 -0.36 1.75 16 7 C 0.05 1.12 4.97 -17.44 -0.09 1.03 16 8 N -0.85 -21.76 11.46 55.50 0.64 -21.13 16 9 Si 0.91 18.62 29.60 -169.99 -5.03 13.59 16 10 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 13 C 0.48 11.24 6.61 -13.05 -0.09 11.15 16 14 O -0.59 -14.76 11.73 5.13 0.06 -14.70 16 15 C -0.14 -2.72 9.12 -37.53 -0.34 -3.06 16 16 C -0.11 -1.82 9.81 -37.12 -0.36 -2.19 16 17 C -0.02 -0.44 4.53 -105.06 -0.48 -0.91 16 18 C -0.11 -1.71 9.80 -39.10 -0.38 -2.09 16 19 C -0.13 -1.84 10.03 -39.65 -0.40 -2.23 16 20 C -0.12 -1.79 9.82 -39.42 -0.39 -2.18 16 21 C -0.04 -0.78 6.31 -39.56 -0.25 -1.03 16 22 Cl -0.09 -1.45 28.95 -51.86 -1.50 -2.95 16 23 C -0.02 -0.30 6.38 -39.06 -0.25 -0.55 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.10 2.52 5.54 -51.93 -0.29 2.24 16 30 H 0.06 1.41 7.39 -51.93 -0.38 1.03 16 31 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.13 2.50 6.64 -52.49 -0.35 2.15 16 33 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.12 2.50 7.03 -52.49 -0.37 2.13 16 LS Contribution 327.26 15.07 4.93 4.93 Total: -1.00 -27.62 327.26 -8.86 -36.47 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.69 Total: 7.08 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -2.97 Total: -12.78 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: 0.34 Total: -31.64 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.06 Total: -14.70 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -1.50 Total: -2.95 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.62 -8.86 -36.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491238780.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.555 kcal (2) G-P(sol) polarization free energy of solvation -27.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds