Wall clock time and date at job start Tue Mar 31 2020 07:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47205 * 2 1 4 4 N 1.46501 * 109.47079 * 180.02562 * 3 2 1 5 5 C 1.36708 * 119.99912 * 270.82931 * 4 3 2 6 6 H 1.08001 * 119.99789 * 141.64765 * 5 4 3 7 7 C 1.39119 * 120.00209 * 321.65105 * 5 4 3 8 8 N 1.31324 * 119.99737 * 339.30639 * 7 5 4 9 9 Si 1.86804 * 120.00313 * 159.31628 * 7 5 4 10 10 H 1.48502 * 109.46754 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47606 * 119.99529 * 9 7 5 12 12 H 1.48505 * 109.46667 * 239.99725 * 9 7 5 13 13 C 1.34779 * 119.99864 * 90.83563 * 4 3 2 14 14 O 1.21761 * 120.00003 * 359.97438 * 13 4 3 15 15 C 1.46224 * 119.99704 * 180.27735 * 13 4 3 16 16 C 1.34986 * 120.00008 * 172.61709 * 15 13 4 17 17 C 1.47146 * 119.99580 * 349.18968 * 16 15 13 18 18 C 1.39897 * 120.16442 * 136.38553 * 17 16 15 19 19 C 1.37858 * 119.85103 * 179.97438 * 18 17 16 20 20 C 1.38417 * 120.18795 * 359.97438 * 19 18 17 21 21 C 1.38504 * 120.34020 * 359.97438 * 20 19 18 22 22 Cl 1.73597 * 119.92944 * 180.02562 * 21 20 19 23 23 C 1.38028 * 120.14493 * 359.78553 * 21 20 19 24 24 H 1.09005 * 109.47039 * 299.99933 * 1 2 3 25 25 H 1.09002 * 109.47078 * 59.99756 * 1 2 3 26 26 H 1.08997 * 109.47296 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46874 * 240.00417 * 2 1 3 28 28 H 1.09000 * 109.47556 * 120.00049 * 2 1 3 29 29 H 1.08999 * 109.47127 * 59.99674 * 3 2 1 30 30 H 1.09000 * 109.46904 * 300.00448 * 3 2 1 31 31 H 0.97004 * 120.00028 * 180.02562 * 8 7 5 32 32 H 1.07996 * 120.00394 * 352.60946 * 15 13 4 33 33 H 1.07993 * 119.99724 * 169.18947 * 16 15 13 34 34 H 1.08001 * 120.07594 * 359.95201 * 18 17 16 35 35 H 1.07997 * 119.90968 * 180.02562 * 19 18 17 36 36 H 1.07997 * 119.83169 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.09522 * 180.25983 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1891 1.4252 1.1829 6 1 5.0943 0.8434 1.2749 7 6 3.7191 2.1569 2.2688 8 7 2.8910 3.1579 2.0770 9 14 4.2662 1.7158 3.9996 10 1 5.1936 0.5572 3.9453 11 1 4.9602 2.8777 4.6107 12 1 3.0792 1.3612 4.8186 13 6 4.1784 1.4597 -1.1680 14 8 3.5692 1.4747 -2.2221 15 6 5.6407 1.4535 -1.1687 16 6 6.3145 1.3203 -2.3307 17 6 5.5961 0.9451 -3.5588 18 6 5.8723 1.6012 -4.7631 19 6 5.1957 1.2441 -5.9100 20 6 4.2453 0.2385 -5.8728 21 6 3.9665 -0.4171 -4.6850 22 17 2.7729 -1.6772 -4.6507 23 6 4.6390 -0.0741 -3.5295 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9563 -0.8899 31 1 2.5635 3.6683 2.8341 32 1 6.1816 1.5556 -0.2395 33 1 7.3808 1.4893 -2.3590 34 1 6.6135 2.3861 -4.7943 35 1 5.4085 1.7497 -6.8402 36 1 3.7185 -0.0364 -6.7746 37 1 4.4240 -0.5886 -2.6047 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491238780.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:46 Heat of formation + Delta-G solvation = -8.396806 kcal Electronic energy + Delta-G solvation = -21293.500303 eV Core-core repulsion = 18061.711727 eV Total energy + Delta-G solvation = -3231.788576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87635 -39.66302 -37.43349 -36.97148 -34.76919 -34.25972 -33.20405 -31.54144 -30.50207 -27.76605 -26.63571 -24.56575 -23.32170 -22.72087 -21.71137 -20.53961 -18.72614 -18.08787 -17.35218 -16.73923 -16.39906 -16.14262 -15.89639 -15.56931 -15.38429 -14.82700 -14.55190 -14.39115 -14.13526 -13.92629 -13.51617 -13.23155 -13.16871 -12.93755 -12.64484 -12.53976 -12.44618 -12.29746 -12.24540 -12.00781 -12.00268 -11.69498 -11.52940 -11.06276 -10.71940 -10.28994 -9.58000 -9.30676 -8.95945 -8.31131 -6.05515 -0.09946 0.46104 1.02553 1.29549 1.44439 1.48322 1.60186 2.29067 2.61649 2.89945 3.06591 3.17530 3.87675 4.02416 4.14226 4.20941 4.27566 4.34136 4.42757 4.52825 4.60698 4.73306 4.81368 4.86638 4.94056 5.05893 5.07398 5.18058 5.30111 5.31908 5.38633 5.43544 5.44854 5.54471 5.61814 5.78328 6.04355 6.04487 6.43130 7.12364 7.64059 8.08985 8.69681 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.005337 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.970490 B = 5244.928306 C = 6271.725844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.117 3.883 4 N -0.439 5.439 5 C -0.353 4.353 6 H 0.098 0.902 7 C 0.005 3.995 8 N -0.888 5.888 9 Si 0.981 3.019 10 H -0.256 1.256 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.470 3.530 14 O -0.613 6.613 15 C -0.179 4.179 16 C -0.063 4.063 17 C -0.057 4.057 18 C -0.106 4.106 19 C -0.121 4.121 20 C -0.116 4.116 21 C -0.063 4.063 22 Cl -0.088 7.088 23 C -0.036 4.036 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.032 0.968 31 H 0.273 0.727 32 H 0.138 0.862 33 H 0.170 0.830 34 H 0.151 0.849 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.727 -4.972 -8.753 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C -0.007 4.007 4 N -0.154 5.154 5 C -0.481 4.481 6 H 0.115 0.885 7 C -0.199 4.199 8 N -0.525 5.525 9 Si 0.805 3.195 10 H -0.180 1.180 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.262 3.738 14 O -0.502 6.502 15 C -0.200 4.200 16 C -0.083 4.083 17 C -0.058 4.058 18 C -0.124 4.124 19 C -0.138 4.138 20 C -0.135 4.135 21 C -0.089 4.089 22 Cl -0.060 7.060 23 C -0.056 4.056 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.156 0.844 33 H 0.187 0.813 34 H 0.169 0.831 35 H 0.180 0.820 36 H 0.164 0.836 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.166 -4.929 -9.083 11.142 hybrid contribution -0.367 -0.015 1.309 1.359 sum 3.799 -4.944 -7.775 9.966 Atomic orbital electron populations 1.21605 0.93846 1.02247 1.01615 1.21667 0.97030 0.96813 1.00313 1.21330 0.81841 0.96250 1.01285 1.43657 1.05132 1.61413 1.05219 1.19727 1.11097 1.28760 0.88511 0.88485 1.26272 0.96725 0.92928 1.03955 1.70009 1.32947 1.16364 1.33165 0.85061 0.78406 0.78712 0.77345 1.17964 1.20421 1.20435 1.19094 0.89541 0.81366 0.83764 1.90691 1.70928 1.57418 1.31177 1.23223 0.93475 1.03754 0.99507 1.22557 1.00245 0.95513 0.89968 1.19039 0.96562 0.95694 0.94483 1.21612 1.00384 0.99239 0.91184 1.21259 0.95982 0.97076 0.99527 1.21289 0.99184 0.96705 0.96301 1.20845 0.96022 0.95862 0.96189 1.98315 1.56946 1.51804 1.98921 1.20851 0.93321 0.96304 0.95088 0.92546 0.93110 0.91025 0.94315 0.92664 0.89654 0.94932 0.91747 0.84449 0.81257 0.83086 0.81989 0.83630 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 9.91 71.98 0.71 -3.90 16 2 C -0.12 -5.05 6.26 30.60 0.19 -4.86 16 3 C 0.12 5.77 5.02 86.38 0.43 6.21 16 4 N -0.44 -22.35 2.50 -640.58 -1.60 -23.96 16 5 C -0.35 -17.63 8.35 84.14 0.70 -16.93 16 6 H 0.10 4.58 6.91 -2.91 -0.02 4.56 16 7 C 0.01 0.25 4.97 84.98 0.42 0.67 16 8 N -0.89 -46.94 11.46 21.69 0.25 -46.69 16 9 Si 0.98 38.52 29.60 68.60 2.03 40.55 16 10 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 11 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 12 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 13 C 0.47 22.98 6.61 86.32 0.57 23.55 16 14 O -0.61 -31.63 11.73 -4.54 -0.05 -31.69 16 15 C -0.18 -7.20 9.12 23.60 0.22 -6.98 16 16 C -0.06 -2.04 9.81 23.86 0.23 -1.81 16 17 C -0.06 -1.97 4.53 -20.15 -0.09 -2.06 16 18 C -0.11 -2.94 9.80 22.58 0.22 -2.72 16 19 C -0.12 -3.00 10.03 22.22 0.22 -2.78 16 20 C -0.12 -3.28 9.82 22.38 0.22 -3.07 16 21 C -0.06 -2.16 6.31 22.28 0.14 -2.02 16 22 Cl -0.09 -2.89 28.95 -2.72 -0.08 -2.97 16 23 C -0.04 -1.39 6.38 22.61 0.14 -1.24 16 24 H 0.06 1.85 8.14 -2.38 -0.02 1.84 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.09 4.48 5.54 -2.39 -0.01 4.47 16 30 H 0.03 1.71 7.39 -2.39 -0.02 1.69 16 31 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 32 H 0.14 5.25 6.64 -2.91 -0.02 5.23 16 33 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 34 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 35 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 37 H 0.09 4.03 7.03 -2.91 -0.02 4.01 16 Total: -1.00 -62.40 327.26 5.95 -56.45 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 1.07 Total: 26.24 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 4.34 Total: -17.94 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -1.36 Total: -70.65 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.05 Total: -31.69 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Atomic # 17 Polarization: -2.89 SS G_CDS: -0.08 Total: -2.97 kcal Total: -62.40 5.95 -56.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491238780.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.051 kcal (2) G-P(sol) polarization free energy of solvation -62.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds