Wall clock time and date at job start Tue Mar 31 2020 07:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 N 1.46497 * 109.47296 * 180.02562 * 3 2 1 5 5 C 1.36719 * 119.99808 * 264.61950 * 4 3 2 6 6 H 1.07998 * 120.00101 * 141.67321 * 5 4 3 7 7 C 1.39125 * 119.99915 * 321.67271 * 5 4 3 8 8 N 1.31316 * 120.00147 * 339.37242 * 7 5 4 9 9 Si 1.86797 * 119.99756 * 159.37328 * 7 5 4 10 10 H 1.48500 * 109.47424 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47228 * 120.00070 * 9 7 5 12 12 H 1.48500 * 109.46991 * 239.99799 * 9 7 5 13 13 C 1.34776 * 120.00316 * 84.61704 * 4 3 2 14 14 O 1.21760 * 119.99917 * 180.02562 * 13 4 3 15 15 C 1.46226 * 119.99877 * 359.97438 * 13 4 3 16 16 C 1.34976 * 120.00061 * 179.97438 * 15 13 4 17 17 C 1.47146 * 120.00220 * 180.02562 * 16 15 13 18 18 C 1.39905 * 120.16375 * 0.02562 * 17 16 15 19 19 C 1.37863 * 119.84742 * 179.97438 * 18 17 16 20 20 C 1.38411 * 120.18990 * 359.97438 * 19 18 17 21 21 C 1.38507 * 120.33795 * 359.72315 * 20 19 18 22 22 Cl 1.73606 * 119.92669 * 180.30630 * 21 20 19 23 23 C 1.38024 * 120.14797 * 0.55566 * 21 20 19 24 24 H 1.08998 * 109.47457 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47440 * 300.00419 * 1 2 3 26 26 H 1.09003 * 109.47267 * 59.99999 * 1 2 3 27 27 H 1.08996 * 109.47042 * 240.00113 * 2 1 3 28 28 H 1.08994 * 109.46902 * 119.99530 * 2 1 3 29 29 H 1.09002 * 109.47500 * 60.00043 * 3 2 1 30 30 H 1.09003 * 109.47081 * 300.00115 * 3 2 1 31 31 H 0.96998 * 120.00362 * 180.02562 * 8 7 5 32 32 H 1.07997 * 120.00085 * 0.02562 * 15 13 4 33 33 H 1.07997 * 119.99853 * 0.02562 * 16 15 13 34 34 H 1.07998 * 120.07357 * 0.02562 * 18 17 16 35 35 H 1.07999 * 119.90439 * 180.02562 * 19 18 17 36 36 H 1.08001 * 119.82994 * 180.02562 * 20 19 18 37 37 H 1.07994 * 120.09209 * 179.71922 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1890 1.5534 1.1779 6 1 5.0945 0.9854 1.3323 7 6 3.7186 2.3980 2.1785 8 7 2.8890 3.3712 1.8800 9 14 4.2671 2.1475 3.9464 10 1 5.1959 0.9910 4.0175 11 1 4.9599 3.3697 4.4277 12 1 3.0811 1.8823 4.7998 13 6 4.1784 1.3333 -1.1629 14 8 5.3960 1.3328 -1.1633 15 6 3.4468 1.2140 -2.4234 16 6 4.1212 1.1051 -3.5875 17 6 3.3850 0.9857 -4.8559 18 6 1.9860 0.9853 -4.8594 19 6 1.3028 0.8736 -6.0517 20 6 1.9971 0.7626 -7.2439 21 6 3.3822 0.7684 -7.2501 22 17 4.2421 0.6365 -8.7524 23 6 4.0802 0.8738 -6.0641 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 2.5613 3.9602 2.5775 32 1 2.3668 1.2140 -2.4230 33 1 5.2012 1.1056 -3.5879 34 1 1.4424 1.0731 -3.9303 35 1 0.2229 0.8736 -6.0555 36 1 1.4561 0.6758 -8.1746 37 1 5.1601 0.8737 -6.0695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491238781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:50 Heat of formation + Delta-G solvation = -21.574513 kcal Electronic energy + Delta-G solvation = -20381.918578 eV Core-core repulsion = 17149.558573 eV Total energy + Delta-G solvation = -3232.360005 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68770 -40.07643 -37.52375 -37.17135 -35.05085 -34.39897 -33.03341 -31.90873 -30.57216 -27.80466 -26.62937 -24.86150 -23.65670 -22.55483 -22.00439 -19.76807 -18.94171 -18.50968 -17.52303 -17.02002 -16.44808 -16.38885 -15.78761 -15.53970 -15.36371 -15.02229 -14.56728 -14.55534 -14.40568 -14.03335 -13.48150 -13.35011 -13.09672 -13.02698 -12.71451 -12.62103 -12.55842 -12.35207 -12.15368 -12.04941 -11.98530 -11.81958 -11.55099 -11.18969 -10.91727 -10.46132 -9.82933 -9.50788 -9.21440 -8.39909 -6.09179 -0.44417 0.21786 1.02020 1.11149 1.39066 1.40379 1.54196 2.26484 2.45943 2.79252 3.04542 3.07913 3.65951 3.80389 3.98300 4.15972 4.17588 4.21004 4.31329 4.35517 4.42417 4.60488 4.69665 4.76287 4.89356 4.98011 5.05676 5.15856 5.18999 5.30267 5.33737 5.38778 5.40594 5.49860 5.58516 5.63498 5.79847 6.19355 6.52897 7.14659 7.41184 8.04806 8.62860 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025918 B = 0.003351 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.075585 B = 8353.849358 C = 9114.548792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.105 3.895 4 N -0.438 5.438 5 C -0.346 4.346 6 H 0.062 0.938 7 C 0.008 3.992 8 N -0.881 5.881 9 Si 0.982 3.018 10 H -0.272 1.272 11 H -0.277 1.277 12 H -0.260 1.260 13 C 0.459 3.541 14 O -0.641 6.641 15 C -0.174 4.174 16 C -0.058 4.058 17 C -0.058 4.058 18 C -0.108 4.108 19 C -0.098 4.098 20 C -0.105 4.105 21 C -0.044 4.044 22 Cl -0.070 7.070 23 C -0.106 4.106 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.277 0.723 32 H 0.150 0.850 33 H 0.113 0.887 34 H 0.143 0.857 35 H 0.169 0.831 36 H 0.158 0.842 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.072 -5.331 -15.281 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C -0.018 4.018 4 N -0.153 5.153 5 C -0.475 4.475 6 H 0.080 0.920 7 C -0.196 4.196 8 N -0.518 5.518 9 Si 0.805 3.195 10 H -0.196 1.196 11 H -0.203 1.203 12 H -0.184 1.184 13 C 0.252 3.748 14 O -0.531 6.531 15 C -0.195 4.195 16 C -0.078 4.078 17 C -0.058 4.058 18 C -0.126 4.126 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.071 4.071 22 Cl -0.041 7.041 23 C -0.125 4.125 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.167 0.833 33 H 0.131 0.869 34 H 0.161 0.839 35 H 0.186 0.814 36 H 0.176 0.824 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.556 -5.173 -15.253 18.728 hybrid contribution 0.993 0.180 0.978 1.406 sum -8.562 -4.992 -14.275 17.379 Atomic orbital electron populations 1.21639 0.92914 1.02528 1.02404 1.21908 0.97690 0.96224 1.01320 1.21755 0.79720 0.96923 1.03366 1.43649 1.06274 1.60861 1.04544 1.19414 1.10420 1.25387 0.92239 0.91998 1.26169 0.96793 0.92592 1.04036 1.69958 1.32655 1.14012 1.35158 0.85075 0.78755 0.78321 0.77389 1.19595 1.20286 1.18421 1.19088 0.87436 0.82681 0.85584 1.90586 1.16069 1.58497 1.87974 1.23154 1.00957 1.03757 0.91593 1.22167 0.99461 0.95284 0.90936 1.18921 0.93996 1.01375 0.91504 1.21803 0.92634 0.97901 1.00278 1.21415 1.01904 0.97864 0.90393 1.21509 0.91325 0.98978 1.00553 1.20919 0.93349 1.05964 0.86827 1.98368 1.77409 1.96519 1.31824 1.21310 1.00825 1.00014 0.90353 0.91129 0.93149 0.91092 0.92233 0.93706 0.89716 0.91477 0.91364 0.83273 0.86855 0.83888 0.81370 0.82416 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.91 71.98 0.71 -2.69 16 2 C -0.13 -4.52 6.11 30.59 0.19 -4.33 16 3 C 0.11 4.45 4.56 86.38 0.39 4.84 16 4 N -0.44 -22.90 2.52 -640.57 -1.61 -24.51 16 5 C -0.35 -19.98 8.88 84.14 0.75 -19.23 16 6 H 0.06 3.85 7.78 -2.91 -0.02 3.82 16 7 C 0.01 0.42 4.91 84.98 0.42 0.84 16 8 N -0.88 -47.17 11.55 21.69 0.25 -46.92 16 9 Si 0.98 42.13 29.60 68.60 2.03 44.16 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 13 C 0.46 23.88 7.52 86.32 0.65 24.53 16 14 O -0.64 -38.87 16.11 -4.54 -0.07 -38.94 16 15 C -0.17 -6.74 8.12 23.60 0.19 -6.55 16 16 C -0.06 -2.00 9.46 23.86 0.23 -1.78 16 17 C -0.06 -1.55 5.87 -20.15 -0.12 -1.67 16 18 C -0.11 -2.33 9.41 22.58 0.21 -2.12 16 19 C -0.10 -1.56 10.03 22.22 0.22 -1.34 16 20 C -0.11 -1.75 9.82 22.38 0.22 -1.53 16 21 C -0.04 -0.92 6.31 22.28 0.14 -0.78 16 22 Cl -0.07 -1.36 28.95 -2.72 -0.08 -1.44 16 23 C -0.11 -2.61 9.58 22.61 0.22 -2.39 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.93 7.56 -2.39 -0.02 1.91 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 3.97 5.62 -2.39 -0.01 3.96 16 30 H 0.07 2.53 6.41 -2.39 -0.02 2.52 16 31 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 32 H 0.15 4.71 4.15 -2.91 -0.01 4.70 16 33 H 0.11 4.35 7.52 -2.91 -0.02 4.32 16 34 H 0.14 2.77 6.17 -2.91 -0.02 2.75 16 35 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -70.36 330.79 6.02 -64.35 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.08 Total: 17.49 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 4.42 Total: -14.19 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -1.36 Total: -71.43 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -0.07 Total: -38.94 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -70.36 6.02 -64.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491238781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.773 kcal (2) G-P(sol) polarization free energy of solvation -70.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds