Wall clock time and date at job start Tue Mar 31 2020 07:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46846 * 2 1 4 4 N 1.46504 * 109.47142 * 180.02562 * 3 2 1 5 5 C 1.36719 * 119.99984 * 263.50567 * 4 3 2 6 6 H 1.08001 * 120.00476 * 139.19977 * 5 4 3 7 7 C 1.39121 * 119.99809 * 319.19103 * 5 4 3 8 8 N 1.31330 * 119.99418 * 165.09196 * 7 5 4 9 9 Si 1.86791 * 120.00190 * 345.08928 * 7 5 4 10 10 H 1.48504 * 109.47131 * 90.42734 * 9 7 5 11 11 H 1.48501 * 109.47211 * 210.42561 * 9 7 5 12 12 H 1.48501 * 109.47523 * 330.42654 * 9 7 5 13 13 C 1.34772 * 119.99798 * 83.50145 * 4 3 2 14 14 O 1.21771 * 119.99964 * 180.02562 * 13 4 3 15 15 C 1.46192 * 120.00205 * 0.02562 * 13 4 3 16 16 C 1.35023 * 120.00028 * 172.06144 * 15 13 4 17 17 C 1.47081 * 119.99841 * 349.05798 * 16 15 13 18 18 C 1.39912 * 120.18538 * 316.14361 * 17 16 15 19 19 C 1.37831 * 119.83800 * 179.67884 * 18 17 16 20 20 C 1.38464 * 120.20730 * 0.62065 * 19 18 17 21 21 C 1.38334 * 120.37258 * 359.67792 * 20 19 18 22 22 C 1.38063 * 120.16171 * 0.02562 * 21 20 19 23 23 Cl 1.73597 * 120.10885 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.47136 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46915 * 299.99836 * 1 2 3 26 26 H 1.09001 * 109.47048 * 59.99430 * 1 2 3 27 27 H 1.09004 * 109.46891 * 240.00930 * 2 1 3 28 28 H 1.08989 * 109.47318 * 120.00344 * 2 1 3 29 29 H 1.09001 * 109.47230 * 60.00356 * 3 2 1 30 30 H 1.09001 * 109.47762 * 300.00133 * 3 2 1 31 31 H 0.97004 * 119.99417 * 180.02562 * 8 7 5 32 32 H 1.07995 * 119.99649 * 351.78472 * 15 13 4 33 33 H 1.07994 * 119.99852 * 169.06239 * 16 15 13 34 34 H 1.08004 * 120.08317 * 0.02562 * 18 17 16 35 35 H 1.07999 * 119.89576 * 180.29664 * 19 18 17 36 36 H 1.07998 * 119.81560 * 179.69595 * 20 19 18 37 37 H 1.08001 * 119.92153 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1891 1.5763 1.1755 6 1 5.0724 0.9820 1.3572 7 6 3.7475 2.4782 2.1384 8 7 4.2100 2.4074 3.3655 9 14 2.4969 3.7898 1.6857 10 1 1.1261 3.2675 1.9169 11 1 2.7162 4.9940 2.5266 12 1 2.6542 4.1507 0.2538 13 6 4.1784 1.3107 -1.1606 14 8 5.3961 1.3103 -1.1611 15 6 3.4469 1.1681 -2.4183 16 6 4.1119 1.1971 -3.5931 17 6 5.5234 1.6090 -3.6292 18 6 5.9504 2.7216 -2.8962 19 6 7.2761 3.0973 -2.9299 20 6 8.1828 2.3851 -3.6966 21 6 7.7688 1.2874 -4.4296 22 6 6.4457 0.8938 -4.4022 23 17 5.9278 -0.4843 -5.3220 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8898 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9018 3.0360 4.0369 32 1 2.3752 1.0351 -2.4075 33 1 3.6073 0.9178 -4.5062 34 1 5.2441 3.2813 -2.3009 35 1 7.6077 3.9531 -2.3607 36 1 9.2191 2.6880 -3.7223 37 1 8.4823 0.7368 -5.0248 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491494477.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:54 Heat of formation + Delta-G solvation = 0.563839 kcal Electronic energy + Delta-G solvation = -21328.937810 eV Core-core repulsion = 18097.537796 eV Total energy + Delta-G solvation = -3231.400014 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06156 -39.79414 -37.45765 -37.20840 -35.02827 -34.41664 -33.29357 -31.59195 -30.67959 -27.74719 -26.97002 -24.63293 -23.40046 -22.78952 -22.32641 -19.76276 -18.97692 -18.46602 -17.82427 -17.27540 -16.37319 -16.23923 -15.86523 -15.49794 -15.26231 -15.04192 -14.76327 -14.62503 -14.21342 -13.98221 -13.90098 -13.64654 -13.35707 -13.10460 -12.59854 -12.53981 -12.45132 -12.32526 -12.26227 -12.08575 -11.86207 -11.67417 -11.50318 -11.05341 -10.86324 -10.36473 -9.74318 -9.45156 -9.03845 -8.50886 -6.16253 -0.22490 0.39969 0.93763 1.17253 1.18288 1.31038 1.40465 2.15286 2.48611 2.75091 2.84398 3.03094 3.75227 3.89566 3.93914 4.02079 4.15306 4.17513 4.38230 4.42691 4.45269 4.57809 4.60110 4.65999 4.81983 4.98100 5.00068 5.12108 5.17359 5.22275 5.28895 5.37442 5.43992 5.53568 5.58372 5.68596 5.96170 6.04611 6.60491 6.95404 7.30110 7.92388 8.66014 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017789 B = 0.005564 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.628145 B = 5031.242581 C = 6055.058291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.078 3.922 4 N -0.469 5.469 5 C -0.320 4.320 6 H 0.041 0.959 7 C 0.009 3.991 8 N -0.916 5.916 9 Si 0.950 3.050 10 H -0.238 1.238 11 H -0.291 1.291 12 H -0.255 1.255 13 C 0.478 3.522 14 O -0.590 6.590 15 C -0.192 4.192 16 C -0.046 4.046 17 C -0.065 4.065 18 C -0.041 4.041 19 C -0.143 4.143 20 C -0.101 4.101 21 C -0.132 4.132 22 C -0.033 4.033 23 Cl -0.066 7.066 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.279 0.721 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.100 0.900 35 H 0.131 0.869 36 H 0.157 0.843 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.550 -0.288 -16.845 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.044 4.044 4 N -0.189 5.189 5 C -0.448 4.448 6 H 0.059 0.941 7 C -0.192 4.192 8 N -0.554 5.554 9 Si 0.774 3.226 10 H -0.163 1.163 11 H -0.218 1.218 12 H -0.179 1.179 13 C 0.271 3.729 14 O -0.476 6.476 15 C -0.213 4.213 16 C -0.066 4.066 17 C -0.065 4.065 18 C -0.060 4.060 19 C -0.161 4.161 20 C -0.119 4.119 21 C -0.150 4.150 22 C -0.060 4.060 23 Cl -0.037 7.037 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.179 0.821 33 H 0.185 0.815 34 H 0.118 0.882 35 H 0.149 0.851 36 H 0.174 0.826 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.009 -0.354 -16.673 17.152 hybrid contribution -0.091 0.296 0.941 0.991 sum -4.100 -0.058 -15.732 16.258 Atomic orbital electron populations 1.21709 0.92774 1.02925 1.02662 1.21877 0.97783 0.95504 1.01990 1.22265 0.80628 0.98966 1.02526 1.43779 1.05421 1.64434 1.05306 1.18567 1.11266 1.22079 0.92927 0.94119 1.26240 1.00018 0.98675 0.94286 1.69789 1.45479 1.37321 1.02761 0.85835 0.79473 0.77956 0.79350 1.16344 1.21762 1.17922 1.19037 0.87740 0.81219 0.84935 1.90726 1.15159 1.54794 1.86892 1.23335 1.01305 1.05404 0.91222 1.22516 0.91757 0.93919 0.98410 1.18910 0.94304 0.95916 0.97414 1.21069 0.96735 0.95079 0.93102 1.21282 0.93211 1.01571 1.00060 1.21410 1.00589 0.94390 0.95476 1.21142 0.93715 0.98430 1.01754 1.21131 0.94826 0.91569 0.98438 1.98322 1.91145 1.42067 1.72193 0.91103 0.93125 0.90405 0.91008 0.93992 0.91957 0.88489 0.91123 0.82061 0.81544 0.88208 0.85146 0.82550 0.82947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.91 71.98 0.71 -2.53 16 2 C -0.13 -4.21 6.02 30.60 0.18 -4.02 16 3 C 0.08 2.91 3.50 86.38 0.30 3.21 16 4 N -0.47 -22.52 2.16 -640.60 -1.39 -23.91 16 5 C -0.32 -18.78 9.35 84.14 0.79 -18.00 16 6 H 0.04 2.83 7.97 -2.91 -0.02 2.81 16 7 C 0.01 0.53 5.37 84.98 0.46 0.99 16 8 N -0.92 -55.03 13.95 21.69 0.30 -54.73 16 9 Si 0.95 41.82 24.86 68.60 1.71 43.52 16 10 H -0.24 -9.15 6.56 99.48 0.65 -8.49 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 13 C 0.48 21.99 6.51 86.31 0.56 22.55 16 14 O -0.59 -31.54 12.15 -4.57 -0.06 -31.60 16 15 C -0.19 -6.41 8.57 23.60 0.20 -6.21 16 16 C -0.05 -1.39 8.95 23.85 0.21 -1.17 16 17 C -0.06 -2.22 4.52 -20.13 -0.09 -2.31 16 18 C -0.04 -1.54 6.63 22.58 0.15 -1.39 16 19 C -0.14 -4.71 10.03 22.23 0.22 -4.48 16 20 C -0.10 -2.76 10.04 22.35 0.22 -2.54 16 21 C -0.13 -3.62 9.82 22.25 0.22 -3.40 16 22 C -0.03 -1.01 6.36 22.65 0.14 -0.87 16 23 Cl -0.07 -1.72 27.95 -2.72 -0.08 -1.80 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 2.11 7.26 -2.38 -0.02 2.09 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 2.48 3.37 -2.39 -0.01 2.47 16 30 H 0.10 2.90 6.61 -2.39 -0.02 2.88 16 31 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.16 4.09 5.96 -2.91 -0.02 4.07 16 33 H 0.17 3.68 7.91 -2.91 -0.02 3.66 16 34 H 0.10 4.09 7.04 -2.91 -0.02 4.07 16 35 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 36 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 37 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -72.79 318.59 5.80 -66.99 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 1.02 Total: 21.69 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 4.29 Total: -20.17 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -1.08 Total: -78.63 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.06 Total: -31.60 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.71 Total: 43.52 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.08 Total: -1.80 kcal Total: -72.79 5.80 -66.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491494477.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.555 kcal (2) G-P(sol) polarization free energy of solvation -72.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds