Wall clock time and date at job start Tue Mar 31 2020 06:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38408 * 119.83389 * 2 1 4 4 C 1.37871 * 120.18523 * 180.02562 * 3 2 1 5 5 C 1.39863 * 119.85285 * 359.97438 * 4 3 2 6 6 C 1.47213 * 120.16248 * 179.97438 * 5 4 3 7 7 C 1.34798 * 119.99744 * 137.32197 * 6 5 4 8 8 C 1.46426 * 120.00287 * 346.33307 * 7 6 5 9 9 O 1.21698 * 119.99943 * 353.73159 * 8 7 6 10 10 N 1.34783 * 120.00205 * 173.72641 * 8 7 6 11 11 C 1.46504 * 119.99962 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47002 * 180.02562 * 11 10 8 13 13 C 1.50695 * 109.47197 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00216 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00261 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00038 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99858 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47171 * 90.00328 * 17 15 13 19 19 H 1.48503 * 109.47132 * 210.00178 * 17 15 13 20 20 H 1.48501 * 109.47322 * 330.00223 * 17 15 13 21 21 C 1.39801 * 119.67417 * 0.25990 * 5 4 3 22 22 C 1.38027 * 119.80819 * 359.48365 * 21 5 4 23 23 Cl 1.73598 * 119.92815 * 180.23144 * 22 21 5 24 24 H 1.08997 * 109.47058 * 89.99238 * 1 2 3 25 25 H 1.09001 * 109.46975 * 210.00085 * 1 2 3 26 26 H 1.09005 * 109.46828 * 329.99926 * 1 2 3 27 27 H 1.08001 * 119.90853 * 0.02562 * 3 2 1 28 28 H 1.08007 * 120.07494 * 180.02562 * 4 3 2 29 29 H 1.08005 * 119.99848 * 317.32310 * 6 5 4 30 30 H 1.08004 * 120.00224 * 166.61345 * 7 6 5 31 31 H 0.96998 * 120.00134 * 0.02562 * 10 8 7 32 32 H 1.08997 * 109.46761 * 300.00394 * 11 10 8 33 33 H 1.09006 * 109.47057 * 60.00306 * 11 10 8 34 34 H 1.09000 * 109.47621 * 300.00288 * 12 11 10 35 35 H 1.09006 * 109.47076 * 60.00181 * 12 11 10 36 36 H 0.97007 * 120.00293 * 180.02562 * 16 15 13 37 37 H 1.07993 * 120.09090 * 179.72090 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2006 0.0000 4 6 3.5742 1.2091 -0.0005 5 6 4.2779 0.0004 -0.0005 6 6 5.7500 0.0014 -0.0017 7 6 6.4252 -0.8560 0.7896 8 6 5.7255 -1.5720 1.8581 9 8 4.5633 -1.3100 2.1065 10 7 6.3685 -2.5213 2.5666 11 6 5.6683 -3.2380 3.6354 12 6 6.6174 -4.2527 4.2758 13 6 5.8974 -4.9896 5.3756 14 1 4.8657 -4.7576 5.5955 15 6 6.5555 -5.9599 6.1012 16 7 5.9269 -6.6032 7.0606 17 14 8.3396 -6.3615 5.7204 18 1 9.2272 -5.4982 6.5402 19 1 8.6047 -7.7877 6.0386 20 1 8.6053 -6.1181 4.2798 21 6 3.5763 -1.2089 -0.0055 22 6 2.1961 -1.2014 0.0004 23 17 1.3218 -2.7011 0.0004 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6514 2.1335 0.0004 28 1 4.1098 2.1471 -0.0001 29 1 6.2890 0.6892 -0.6364 30 1 7.4832 -1.0115 0.6383 31 1 7.2950 -2.7299 2.3689 32 1 5.3334 -2.5271 4.3907 33 1 4.8060 -3.7590 3.2191 34 1 6.9527 -4.9637 3.5207 35 1 7.4795 -3.7314 4.6922 36 1 6.3900 -7.2856 7.5713 37 1 4.1128 -2.1461 -0.0101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492500810.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:08 Heat of formation + Delta-G solvation = -7.140425 kcal Electronic energy + Delta-G solvation = -20216.387122 eV Core-core repulsion = 16984.653026 eV Total energy + Delta-G solvation = -3231.734096 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.02651 -38.81134 -36.40247 -35.22162 -34.13954 -32.81330 -31.54982 -30.75695 -30.07723 -27.02583 -25.12820 -23.13297 -22.48122 -21.22198 -20.75263 -19.27719 -17.47556 -16.88605 -15.92754 -15.84421 -15.44289 -14.84721 -14.79293 -14.38184 -14.16595 -13.89190 -13.80435 -13.26343 -13.13270 -12.67633 -12.60268 -12.43814 -12.28680 -11.69785 -11.50866 -11.48759 -11.26974 -11.20944 -10.68458 -10.40334 -10.26416 -9.97131 -9.86325 -9.57566 -9.31814 -8.73574 -8.61640 -8.38968 -8.10705 -6.10886 -4.10976 0.61017 1.29720 1.75460 2.25721 3.24876 3.32482 3.33739 3.50895 3.67458 3.68287 4.37581 4.53533 4.69785 4.83370 4.92981 5.02998 5.21937 5.22829 5.30389 5.46930 5.50517 5.59967 5.78748 5.85904 5.99254 6.03492 6.15199 6.21133 6.30523 6.36652 6.46450 6.56363 6.75579 6.80065 7.14371 7.23145 7.66793 7.92348 8.43859 8.59036 8.93699 9.49150 11.02202 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019894 B = 0.003582 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.128494 B = 7815.480399 C = 8747.415156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.070 4.070 3 C -0.123 4.123 4 C -0.095 4.095 5 C -0.059 4.059 6 C -0.037 4.037 7 C -0.200 4.200 8 C 0.526 3.474 9 O -0.533 6.533 10 N -0.719 5.719 11 C 0.131 3.869 12 C -0.022 4.022 13 C -0.523 4.523 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.898 5.898 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.026 4.026 22 C -0.043 4.043 23 Cl -0.072 7.072 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.396 0.604 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.021 0.979 35 H 0.017 0.983 36 H 0.265 0.735 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.007 15.773 -19.008 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.071 4.071 3 C -0.142 4.142 4 C -0.113 4.113 5 C -0.060 4.060 6 C -0.057 4.057 7 C -0.221 4.221 8 C 0.313 3.687 9 O -0.413 6.413 10 N -0.368 5.368 11 C 0.008 3.992 12 C -0.060 4.060 13 C -0.561 4.561 14 H 0.094 0.906 15 C -0.133 4.133 16 N -0.537 5.537 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.045 4.045 22 C -0.069 4.069 23 Cl -0.043 7.043 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.229 0.771 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.909 15.637 -18.642 24.644 hybrid contribution 1.544 -0.621 0.059 1.665 sum -2.365 15.016 -18.583 24.008 Atomic orbital electron populations 1.20872 0.90662 1.03480 1.02536 1.19791 0.96474 0.91483 0.99349 1.20749 0.93978 0.96788 1.02648 1.21212 0.94065 0.97031 0.98999 1.18721 0.92741 0.92755 1.01739 1.22262 0.92214 0.95157 0.96019 1.23185 1.00945 1.00275 0.97655 1.18468 0.86848 0.80262 0.83099 1.90887 1.16184 1.65381 1.68804 1.46323 1.15993 1.37975 1.36528 1.21498 0.95964 0.94190 0.87519 1.19791 0.95439 0.94142 0.96590 1.20920 1.00214 1.19479 1.15486 0.90646 1.25003 0.98132 0.95548 0.94602 1.69906 1.37122 1.24951 1.21683 0.86752 0.85432 0.77687 0.79199 1.20238 1.21260 1.19090 1.20967 0.91653 0.97890 0.93962 1.20557 0.92176 0.86677 1.07512 1.98354 1.76409 1.32524 1.96991 0.90918 0.90780 0.91262 0.85465 0.85658 0.84548 0.84890 0.77105 0.91978 0.91891 0.96034 0.96492 0.92554 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.60 36.01 0.35 -0.82 16 2 C -0.07 -0.86 5.89 -104.46 -0.62 -1.48 16 3 C -0.12 -1.34 9.68 -39.65 -0.38 -1.73 16 4 C -0.09 -1.04 9.80 -39.11 -0.38 -1.43 16 5 C -0.06 -0.74 4.50 -105.06 -0.47 -1.22 16 6 C -0.04 -0.37 9.80 -37.16 -0.36 -0.74 16 7 C -0.20 -2.24 9.87 -37.51 -0.37 -2.61 16 8 C 0.53 8.32 6.78 -12.96 -0.09 8.23 16 9 O -0.53 -10.21 12.37 5.19 0.06 -10.15 16 10 N -0.72 -11.67 5.55 -61.70 -0.34 -12.01 16 11 C 0.13 2.68 5.61 -4.04 -0.02 2.65 16 12 C -0.02 -0.50 4.16 -27.89 -0.12 -0.62 16 13 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 14 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 17 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 21 C -0.03 -0.37 6.48 -39.07 -0.25 -0.63 16 22 C -0.04 -0.61 6.31 -39.56 -0.25 -0.86 16 23 Cl -0.07 -1.01 27.27 -51.86 -1.41 -2.42 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.78 6.88 -51.93 -0.36 0.43 16 26 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 27 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 28 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 29 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 30 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 31 H 0.40 5.29 8.45 -40.82 -0.35 4.95 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 35 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.12 1.89 7.09 -52.49 -0.37 1.52 16 LS Contribution 329.20 15.07 4.96 4.96 Total: -1.00 -33.03 329.20 -8.84 -41.87 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.81 Total: 2.47 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -3.40 Total: -14.43 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.43 Total: -38.74 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.06 Total: -10.15 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.41 Total: -2.42 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.03 -8.84 -41.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492500810.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.725 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds