Wall clock time and date at job start Tue Mar 31 2020 06:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38408 * 119.83389 * 2 1 4 4 C 1.37871 * 120.18523 * 180.02562 * 3 2 1 5 5 C 1.39863 * 119.85285 * 359.97438 * 4 3 2 6 6 C 1.47213 * 120.16248 * 179.97438 * 5 4 3 7 7 C 1.34798 * 119.99744 * 137.32197 * 6 5 4 8 8 C 1.46426 * 120.00287 * 346.33307 * 7 6 5 9 9 O 1.21698 * 119.99943 * 353.73159 * 8 7 6 10 10 N 1.34783 * 120.00205 * 173.72641 * 8 7 6 11 11 C 1.46504 * 119.99962 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47002 * 180.02562 * 11 10 8 13 13 C 1.50695 * 109.47197 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00216 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00261 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00038 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99858 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47171 * 90.00328 * 17 15 13 19 19 H 1.48503 * 109.47132 * 210.00178 * 17 15 13 20 20 H 1.48501 * 109.47322 * 330.00223 * 17 15 13 21 21 C 1.39801 * 119.67417 * 0.25990 * 5 4 3 22 22 C 1.38027 * 119.80819 * 359.48365 * 21 5 4 23 23 Cl 1.73598 * 119.92815 * 180.23144 * 22 21 5 24 24 H 1.08997 * 109.47058 * 89.99238 * 1 2 3 25 25 H 1.09001 * 109.46975 * 210.00085 * 1 2 3 26 26 H 1.09005 * 109.46828 * 329.99926 * 1 2 3 27 27 H 1.08001 * 119.90853 * 0.02562 * 3 2 1 28 28 H 1.08007 * 120.07494 * 180.02562 * 4 3 2 29 29 H 1.08005 * 119.99848 * 317.32310 * 6 5 4 30 30 H 1.08004 * 120.00224 * 166.61345 * 7 6 5 31 31 H 0.96998 * 120.00134 * 0.02562 * 10 8 7 32 32 H 1.08997 * 109.46761 * 300.00394 * 11 10 8 33 33 H 1.09006 * 109.47057 * 60.00306 * 11 10 8 34 34 H 1.09000 * 109.47621 * 300.00288 * 12 11 10 35 35 H 1.09006 * 109.47076 * 60.00181 * 12 11 10 36 36 H 0.97007 * 120.00293 * 180.02562 * 16 15 13 37 37 H 1.07993 * 120.09090 * 179.72090 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2006 0.0000 4 6 3.5742 1.2091 -0.0005 5 6 4.2779 0.0004 -0.0005 6 6 5.7500 0.0014 -0.0017 7 6 6.4252 -0.8560 0.7896 8 6 5.7255 -1.5720 1.8581 9 8 4.5633 -1.3100 2.1065 10 7 6.3685 -2.5213 2.5666 11 6 5.6683 -3.2380 3.6354 12 6 6.6174 -4.2527 4.2758 13 6 5.8974 -4.9896 5.3756 14 1 4.8657 -4.7576 5.5955 15 6 6.5555 -5.9599 6.1012 16 7 5.9269 -6.6032 7.0606 17 14 8.3396 -6.3615 5.7204 18 1 9.2272 -5.4982 6.5402 19 1 8.6047 -7.7877 6.0386 20 1 8.6053 -6.1181 4.2798 21 6 3.5763 -1.2089 -0.0055 22 6 2.1961 -1.2014 0.0004 23 17 1.3218 -2.7011 0.0004 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6514 2.1335 0.0004 28 1 4.1098 2.1471 -0.0001 29 1 6.2890 0.6892 -0.6364 30 1 7.4832 -1.0115 0.6383 31 1 7.2950 -2.7299 2.3689 32 1 5.3334 -2.5271 4.3907 33 1 4.8060 -3.7590 3.2191 34 1 6.9527 -4.9637 3.5207 35 1 7.4795 -3.7314 4.6922 36 1 6.3900 -7.2856 7.5713 37 1 4.1128 -2.1461 -0.0101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492500810.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:07 Heat of formation + Delta-G solvation = -28.162728 kcal Electronic energy + Delta-G solvation = -20217.298717 eV Core-core repulsion = 16984.653026 eV Total energy + Delta-G solvation = -3232.645691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.10836 -39.89657 -37.45590 -36.71113 -35.18677 -34.76404 -32.64254 -31.75712 -31.62800 -28.07294 -26.75750 -24.23995 -23.51977 -22.61666 -22.14887 -20.40786 -19.03873 -18.46873 -17.05087 -16.90937 -16.48633 -16.24154 -16.18060 -16.01018 -15.28502 -14.96346 -14.82514 -14.64968 -14.48134 -14.30701 -13.52237 -13.36942 -13.29454 -13.19422 -13.03295 -12.63803 -12.43623 -12.19450 -12.15803 -12.14255 -11.77574 -11.68863 -11.53793 -10.86092 -10.80486 -10.69381 -10.01273 -9.53456 -9.03627 -8.31807 -6.39454 -0.28423 0.35155 0.85621 1.23963 1.37386 1.40581 1.51855 2.35445 2.37054 2.42429 2.76886 3.03117 3.71348 3.83128 3.95202 4.02588 4.21122 4.34251 4.39917 4.40956 4.60179 4.63741 4.72827 4.72929 4.76039 4.94972 5.07123 5.11819 5.18164 5.24897 5.38499 5.41981 5.45067 5.49429 5.59314 5.65627 5.94670 6.20408 6.65714 6.73989 7.25085 7.38205 8.85229 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019894 B = 0.003582 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.128494 B = 7815.480399 C = 8747.415156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.093 4.093 5 C -0.078 4.078 6 C -0.017 4.017 7 C -0.210 4.210 8 C 0.519 3.481 9 O -0.574 6.574 10 N -0.713 5.713 11 C 0.149 3.851 12 C -0.011 4.011 13 C -0.541 4.541 14 H 0.025 0.975 15 C 0.003 3.997 16 N -0.951 5.951 17 Si 0.961 3.039 18 H -0.263 1.263 19 H -0.286 1.286 20 H -0.237 1.237 21 C -0.048 4.048 22 C -0.069 4.069 23 Cl -0.087 7.087 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.159 0.841 28 H 0.161 0.839 29 H 0.186 0.814 30 H 0.174 0.826 31 H 0.413 0.587 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.268 0.732 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.177 18.242 -21.211 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.111 4.111 5 C -0.078 4.078 6 C -0.036 4.036 7 C -0.230 4.230 8 C 0.309 3.691 9 O -0.455 6.455 10 N -0.364 5.364 11 C 0.025 3.975 12 C -0.049 4.049 13 C -0.579 4.579 14 H 0.043 0.957 15 C -0.194 4.194 16 N -0.591 5.591 17 Si 0.783 3.217 18 H -0.188 1.188 19 H -0.212 1.212 20 H -0.160 1.160 21 C -0.067 4.067 22 C -0.095 4.095 23 Cl -0.058 7.058 24 H 0.106 0.894 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.177 0.823 28 H 0.178 0.822 29 H 0.203 0.797 30 H 0.191 0.809 31 H 0.250 0.750 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.062 18.128 -20.881 27.672 hybrid contribution 0.483 -1.311 0.748 1.585 sum -0.578 16.817 -20.133 26.238 Atomic orbital electron populations 1.20906 0.89261 1.03660 1.03539 1.20166 0.97777 0.91377 0.99080 1.21198 0.94447 0.97340 1.01238 1.21666 0.94349 0.97763 0.97295 1.19125 0.94462 0.92567 1.01683 1.22752 0.90956 0.94571 0.95333 1.23211 1.02583 1.00306 0.96920 1.19335 0.86506 0.79629 0.83597 1.90880 1.18172 1.66491 1.70000 1.46066 1.16687 1.38064 1.35627 1.20918 0.95133 0.93367 0.88124 1.19636 0.95632 0.94420 0.95230 1.21261 0.98707 1.20528 1.17449 0.95670 1.26113 1.04124 0.95073 0.94057 1.70083 1.39776 1.25967 1.23281 0.85512 0.78000 0.77433 0.80762 1.18823 1.21193 1.15958 1.20967 0.91919 0.98144 0.95639 1.20843 0.92502 0.86940 1.09226 1.98334 1.76682 1.33651 1.97161 0.89442 0.92234 0.89398 0.82326 0.82181 0.79727 0.80882 0.75040 0.94250 0.94456 0.94588 0.94567 0.92296 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 9.60 71.24 0.68 -1.53 16 2 C -0.08 -2.00 5.89 -19.76 -0.12 -2.11 16 3 C -0.12 -2.41 9.68 22.22 0.22 -2.19 16 4 C -0.09 -1.76 9.80 22.58 0.22 -1.54 16 5 C -0.08 -1.81 4.50 -20.15 -0.09 -1.90 16 6 C -0.02 -0.28 9.80 23.84 0.23 -0.05 16 7 C -0.21 -4.04 9.87 23.61 0.23 -3.81 16 8 C 0.52 16.01 6.78 86.37 0.59 16.60 16 9 O -0.57 -22.44 12.37 -4.34 -0.05 -22.49 16 10 N -0.71 -22.50 5.55 -467.33 -2.59 -25.10 16 11 C 0.15 6.28 5.61 86.38 0.48 6.76 16 12 C -0.01 -0.52 4.16 29.84 0.12 -0.40 16 13 C -0.54 -31.62 9.66 25.60 0.25 -31.38 16 14 H 0.02 1.66 7.99 -2.91 -0.02 1.63 16 15 C 0.00 0.20 5.47 84.66 0.46 0.66 16 16 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 17 Si 0.96 42.76 27.47 68.60 1.88 44.64 16 18 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 19 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.24 -9.34 6.54 99.48 0.65 -8.69 16 21 C -0.05 -1.40 6.48 22.60 0.15 -1.25 16 22 C -0.07 -2.01 6.31 22.28 0.14 -1.87 16 23 Cl -0.09 -2.61 27.27 -2.72 -0.07 -2.68 16 24 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.29 6.88 -2.39 -0.02 1.27 16 26 H 0.09 1.29 8.08 -2.38 -0.02 1.27 16 27 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 28 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.19 1.28 8.06 -2.91 -0.02 1.26 16 30 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 31 H 0.41 9.98 8.45 -92.71 -0.78 9.20 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 1.73 8.14 -2.38 -0.02 1.72 16 34 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 35 H 0.04 1.52 7.57 -2.38 -0.02 1.50 16 36 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 37 H 0.10 3.34 7.09 -2.91 -0.02 3.32 16 Total: -1.00 -77.43 329.20 3.28 -74.15 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.24 Total: 15.37 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 3.57 Total: -24.01 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -2.30 Total: -84.99 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.05 Total: -22.49 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.88 Total: 44.64 kcal Atomic # 17 Polarization: -2.61 SS G_CDS: -0.07 Total: -2.68 kcal Total: -77.43 3.28 -74.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492500810.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.991 kcal (2) G-P(sol) polarization free energy of solvation -77.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds