Wall clock time and date at job start Tue Mar 31 2020 06:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38399 * 119.83769 * 2 1 4 4 C 1.37872 * 120.18712 * 180.02562 * 3 2 1 5 5 C 1.39852 * 119.85232 * 359.97438 * 4 3 2 6 6 C 1.47212 * 120.16387 * 180.02562 * 5 4 3 7 7 C 1.34814 * 119.99721 * 359.97438 * 6 5 4 8 8 C 1.46424 * 119.99654 * 179.97438 * 7 6 5 9 9 O 1.21691 * 120.00386 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99725 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00025 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47374 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.47084 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00244 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99755 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99599 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99779 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47043 * 90.00495 * 17 15 13 19 19 H 1.48507 * 109.46613 * 210.00158 * 17 15 13 20 20 H 1.48495 * 109.47113 * 329.99725 * 17 15 13 21 21 C 1.39803 * 119.67530 * 359.97438 * 5 4 3 22 22 C 1.38029 * 119.81123 * 0.25525 * 21 5 4 23 23 Cl 1.73594 * 119.92957 * 179.74659 * 22 21 5 24 24 H 1.08992 * 109.47028 * 90.00162 * 1 2 3 25 25 H 1.08997 * 109.46895 * 210.00835 * 1 2 3 26 26 H 1.09002 * 109.46953 * 330.00114 * 1 2 3 27 27 H 1.08007 * 119.90506 * 359.97438 * 3 2 1 28 28 H 1.08006 * 120.07180 * 180.02562 * 4 3 2 29 29 H 1.07999 * 120.00187 * 179.97438 * 6 5 4 30 30 H 1.07999 * 120.00087 * 359.97438 * 7 6 5 31 31 H 0.96997 * 120.00099 * 0.02562 * 10 8 7 32 32 H 1.09004 * 109.47001 * 299.99823 * 11 10 8 33 33 H 1.09004 * 109.47367 * 59.99516 * 11 10 8 34 34 H 1.08996 * 109.47078 * 300.00171 * 12 11 10 35 35 H 1.08998 * 109.46989 * 59.99828 * 12 11 10 36 36 H 0.97011 * 119.99449 * 179.97438 * 16 15 13 37 37 H 1.08002 * 120.09161 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2005 0.0000 4 6 3.5744 1.2089 -0.0005 5 6 4.2779 0.0002 -0.0005 6 6 5.7500 0.0012 -0.0005 7 6 6.4233 1.1692 -0.0011 8 6 7.8875 1.1702 -0.0005 9 8 8.4967 0.1167 0.0000 10 7 8.5606 2.3378 -0.0015 11 6 10.0256 2.3389 -0.0015 12 6 10.5346 3.7817 -0.0035 13 6 12.0416 3.7827 -0.0028 14 1 12.5823 2.8478 -0.0008 15 6 12.7302 4.9773 -0.0038 16 7 14.0453 4.9781 -0.0027 17 14 11.7950 6.5944 -0.0066 18 1 11.5462 7.0247 1.3927 19 1 12.5975 7.6290 -0.7074 20 1 10.4982 6.4150 -0.7075 21 6 3.5763 -1.2090 0.0006 22 6 2.1960 -1.2015 -0.0037 23 17 1.3218 -2.7012 -0.0090 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5140 26 1 -0.3633 0.8900 0.5138 27 1 1.6514 2.1335 -0.0004 28 1 4.1099 2.1469 -0.0001 29 1 6.2907 -0.9337 -0.0001 30 1 5.8826 2.1041 -0.0019 31 1 8.0750 3.1775 -0.0023 32 1 10.3893 1.8261 0.8890 33 1 10.3893 1.8244 -0.8910 34 1 10.1710 4.2941 -0.8941 35 1 10.1709 4.2965 0.8858 36 1 14.5298 5.8186 -0.0038 37 1 4.1128 -2.1463 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492500811.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:11 Heat of formation + Delta-G solvation = -20.710125 kcal Electronic energy + Delta-G solvation = -19111.968896 eV Core-core repulsion = 15879.646374 eV Total energy + Delta-G solvation = -3232.322522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.02843 -39.23628 -36.93052 -35.21937 -34.65148 -32.82142 -31.85001 -31.11175 -30.15130 -27.40422 -25.14064 -23.43370 -22.98808 -21.18581 -20.77744 -19.35289 -17.61613 -16.89417 -16.57981 -15.97522 -15.71300 -15.03291 -14.98286 -14.61585 -14.37068 -14.19114 -13.78255 -13.40400 -13.32396 -12.94394 -12.86442 -12.61543 -12.31992 -12.11152 -12.07241 -11.51221 -11.48643 -11.24008 -11.16380 -10.44836 -10.33124 -10.30653 -9.98646 -9.62165 -9.33043 -9.26133 -8.70062 -8.61711 -8.39708 -6.12348 -4.12560 0.18494 0.78169 1.70009 1.71429 3.18871 3.23946 3.31451 3.32703 3.56035 3.58806 4.25973 4.26877 4.36272 4.48177 4.62764 4.76253 4.89005 5.07556 5.15356 5.17144 5.20447 5.27354 5.36150 5.61663 5.65773 5.76756 5.93556 5.98649 6.18518 6.21227 6.29273 6.33881 6.53891 6.71558 7.11673 7.21096 7.64952 7.87439 8.41757 8.52825 8.92052 9.47583 11.00652 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.036900 B = 0.002213 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.630974 B =12649.283637 C =13382.157241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.072 4.072 3 C -0.109 4.109 4 C -0.097 4.097 5 C -0.058 4.058 6 C -0.039 4.039 7 C -0.189 4.189 8 C 0.535 3.465 9 O -0.550 6.550 10 N -0.719 5.719 11 C 0.129 3.871 12 C -0.022 4.022 13 C -0.523 4.523 14 H 0.076 0.924 15 C 0.068 3.932 16 N -0.898 5.898 17 Si 0.883 3.117 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.086 4.086 22 C -0.039 4.039 23 Cl -0.067 7.067 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.128 0.872 31 H 0.397 0.603 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.022 0.978 35 H 0.018 0.982 36 H 0.265 0.735 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.450 -8.589 -0.037 31.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.073 4.073 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.058 4.058 6 C -0.059 4.059 7 C -0.210 4.210 8 C 0.323 3.677 9 O -0.430 6.430 10 N -0.368 5.368 11 C 0.007 3.993 12 C -0.060 4.060 13 C -0.562 4.562 14 H 0.094 0.906 15 C -0.134 4.134 16 N -0.536 5.536 17 Si 0.710 3.290 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.105 4.105 22 C -0.066 4.066 23 Cl -0.038 7.038 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.153 0.847 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.146 0.854 31 H 0.230 0.770 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -29.883 -9.337 -0.038 31.307 hybrid contribution -0.563 1.282 0.010 1.401 sum -30.446 -8.054 -0.028 31.493 Atomic orbital electron populations 1.20909 0.90183 1.03621 1.03061 1.19923 0.96884 0.91412 0.99057 1.20954 0.93972 0.97222 1.00578 1.21559 0.94173 0.97971 0.97749 1.18954 0.92990 0.92647 1.01231 1.22254 0.90943 0.99392 0.93337 1.23113 0.94059 0.99074 1.04742 1.18281 0.87661 0.84312 0.77447 1.90803 1.70340 1.31247 1.50594 1.46239 1.09318 1.07775 1.73465 1.21541 0.75870 1.00196 1.01743 1.19798 0.98045 0.91306 0.96845 1.20919 0.88645 0.94909 1.51698 0.90603 1.25013 0.94787 0.99176 0.94381 1.69908 1.06309 1.27032 1.50358 0.86741 0.80253 0.83515 0.78490 1.20226 1.21265 1.19089 1.21261 0.91841 0.98680 0.98734 1.20689 0.92203 0.86953 1.06706 1.98366 1.76393 1.32135 1.96915 0.90483 0.90725 0.90919 0.84721 0.84644 0.84330 0.85400 0.76954 0.91823 0.91804 0.95972 0.96415 0.92542 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 9.60 36.01 0.35 -0.32 16 2 C -0.07 -0.55 5.89 -104.46 -0.62 -1.16 16 3 C -0.11 -0.77 9.67 -39.66 -0.38 -1.15 16 4 C -0.10 -0.77 9.41 -39.11 -0.37 -1.13 16 5 C -0.06 -0.54 5.87 -105.06 -0.62 -1.16 16 6 C -0.04 -0.43 9.46 -37.15 -0.35 -0.78 16 7 C -0.19 -2.18 9.41 -37.50 -0.35 -2.54 16 8 C 0.54 8.64 7.74 -12.96 -0.10 8.54 16 9 O -0.55 -11.04 16.23 5.20 0.08 -10.96 16 10 N -0.72 -11.65 5.55 -61.70 -0.34 -11.99 16 11 C 0.13 2.61 5.61 -4.04 -0.02 2.59 16 12 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 13 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 14 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 17 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 21 C -0.09 -0.78 9.57 -39.07 -0.37 -1.15 16 22 C -0.04 -0.34 6.31 -39.56 -0.25 -0.58 16 23 Cl -0.07 -0.54 27.27 -51.86 -1.41 -1.95 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.42 6.89 -51.93 -0.36 0.06 16 26 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 27 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 28 H 0.14 0.85 6.17 -52.48 -0.32 0.52 16 29 H 0.14 1.60 7.52 -52.49 -0.39 1.21 16 30 H 0.13 1.07 6.07 -52.49 -0.32 0.75 16 31 H 0.40 5.21 8.45 -40.82 -0.35 4.86 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 35 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 36 H 0.26 7.49 8.31 -40.81 -0.34 7.15 16 37 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 333.86 15.07 5.03 5.03 Total: -1.00 -32.67 333.86 -8.80 -41.47 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -4.63 Total: 1.21 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -3.64 Total: -12.54 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.43 Total: -38.47 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.41 Total: -1.95 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.67 -8.80 -41.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492500811.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.762 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds