Wall clock time and date at job start Tue Mar 31 2020 06:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38399 * 119.83769 * 2 1 4 4 C 1.37872 * 120.18712 * 180.02562 * 3 2 1 5 5 C 1.39852 * 119.85232 * 359.97438 * 4 3 2 6 6 C 1.47212 * 120.16387 * 180.02562 * 5 4 3 7 7 C 1.34814 * 119.99721 * 359.97438 * 6 5 4 8 8 C 1.46424 * 119.99654 * 179.97438 * 7 6 5 9 9 O 1.21691 * 120.00386 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99725 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00025 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47374 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.47084 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00244 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99755 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99599 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99779 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47043 * 90.00495 * 17 15 13 19 19 H 1.48507 * 109.46613 * 210.00158 * 17 15 13 20 20 H 1.48495 * 109.47113 * 329.99725 * 17 15 13 21 21 C 1.39803 * 119.67530 * 359.97438 * 5 4 3 22 22 C 1.38029 * 119.81123 * 0.25525 * 21 5 4 23 23 Cl 1.73594 * 119.92957 * 179.74659 * 22 21 5 24 24 H 1.08992 * 109.47028 * 90.00162 * 1 2 3 25 25 H 1.08997 * 109.46895 * 210.00835 * 1 2 3 26 26 H 1.09002 * 109.46953 * 330.00114 * 1 2 3 27 27 H 1.08007 * 119.90506 * 359.97438 * 3 2 1 28 28 H 1.08006 * 120.07180 * 180.02562 * 4 3 2 29 29 H 1.07999 * 120.00187 * 179.97438 * 6 5 4 30 30 H 1.07999 * 120.00087 * 359.97438 * 7 6 5 31 31 H 0.96997 * 120.00099 * 0.02562 * 10 8 7 32 32 H 1.09004 * 109.47001 * 299.99823 * 11 10 8 33 33 H 1.09004 * 109.47367 * 59.99516 * 11 10 8 34 34 H 1.08996 * 109.47078 * 300.00171 * 12 11 10 35 35 H 1.08998 * 109.46989 * 59.99828 * 12 11 10 36 36 H 0.97011 * 119.99449 * 179.97438 * 16 15 13 37 37 H 1.08002 * 120.09161 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2005 0.0000 4 6 3.5744 1.2089 -0.0005 5 6 4.2779 0.0002 -0.0005 6 6 5.7500 0.0012 -0.0005 7 6 6.4233 1.1692 -0.0011 8 6 7.8875 1.1702 -0.0005 9 8 8.4967 0.1167 0.0000 10 7 8.5606 2.3378 -0.0015 11 6 10.0256 2.3389 -0.0015 12 6 10.5346 3.7817 -0.0035 13 6 12.0416 3.7827 -0.0028 14 1 12.5823 2.8478 -0.0008 15 6 12.7302 4.9773 -0.0038 16 7 14.0453 4.9781 -0.0027 17 14 11.7950 6.5944 -0.0066 18 1 11.5462 7.0247 1.3927 19 1 12.5975 7.6290 -0.7074 20 1 10.4982 6.4150 -0.7075 21 6 3.5763 -1.2090 0.0006 22 6 2.1960 -1.2015 -0.0037 23 17 1.3218 -2.7012 -0.0090 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5140 26 1 -0.3633 0.8900 0.5138 27 1 1.6514 2.1335 -0.0004 28 1 4.1099 2.1469 -0.0001 29 1 6.2907 -0.9337 -0.0001 30 1 5.8826 2.1041 -0.0019 31 1 8.0750 3.1775 -0.0023 32 1 10.3893 1.8261 0.8890 33 1 10.3893 1.8244 -0.8910 34 1 10.1710 4.2941 -0.8941 35 1 10.1709 4.2965 0.8858 36 1 14.5298 5.8186 -0.0038 37 1 4.1128 -2.1463 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492500811.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:11 Heat of formation + Delta-G solvation = -40.903785 kcal Electronic energy + Delta-G solvation = -19112.844559 eV Core-core repulsion = 15879.646374 eV Total energy + Delta-G solvation = -3233.198185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.86232 -40.33248 -37.55846 -36.71169 -35.51286 -34.79057 -32.71156 -31.93944 -31.58904 -28.25545 -26.72061 -24.19490 -23.84537 -22.63496 -22.00840 -20.41477 -19.03972 -18.49897 -17.40508 -16.86881 -16.47182 -16.46814 -16.21460 -16.05577 -15.19679 -15.16349 -14.90732 -14.75957 -14.53792 -14.23058 -13.52661 -13.45052 -13.34622 -13.05399 -12.96141 -12.75022 -12.67011 -12.21899 -12.16381 -12.06947 -11.76821 -11.75194 -11.51969 -11.10371 -11.00130 -10.78445 -10.08302 -9.85774 -9.17527 -8.29602 -6.37187 -0.56044 0.18814 0.88138 1.10736 1.39997 1.43067 1.54319 2.24954 2.29942 2.37737 2.73543 3.05407 3.53233 3.71049 3.84904 4.03720 4.07282 4.22192 4.26622 4.37525 4.42336 4.58482 4.69173 4.74891 4.78386 4.82583 4.96442 5.11892 5.13863 5.23206 5.31428 5.39895 5.40694 5.43890 5.54158 5.64805 5.77247 6.22386 6.62706 6.71788 7.26813 7.28447 8.87190 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.036900 B = 0.002213 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.630974 B =12649.283637 C =13382.157241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.071 4.071 3 C -0.109 4.109 4 C -0.092 4.092 5 C -0.076 4.076 6 C -0.022 4.022 7 C -0.198 4.198 8 C 0.533 3.467 9 O -0.600 6.600 10 N -0.709 5.709 11 C 0.143 3.857 12 C -0.012 4.012 13 C -0.541 4.541 14 H 0.027 0.973 15 C 0.001 3.999 16 N -0.951 5.951 17 Si 0.962 3.038 18 H -0.265 1.265 19 H -0.287 1.287 20 H -0.234 1.234 21 C -0.095 4.095 22 C -0.055 4.055 23 Cl -0.068 7.068 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.164 0.836 28 H 0.158 0.842 29 H 0.122 0.878 30 H 0.168 0.832 31 H 0.417 0.583 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.037 0.963 36 H 0.268 0.732 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.439 -6.179 -0.055 34.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.072 4.072 3 C -0.127 4.127 4 C -0.110 4.110 5 C -0.077 4.077 6 C -0.042 4.042 7 C -0.218 4.218 8 C 0.323 3.677 9 O -0.483 6.483 10 N -0.359 5.359 11 C 0.019 3.981 12 C -0.050 4.050 13 C -0.579 4.579 14 H 0.045 0.955 15 C -0.196 4.196 16 N -0.591 5.591 17 Si 0.783 3.217 18 H -0.190 1.190 19 H -0.213 1.213 20 H -0.157 1.157 21 C -0.114 4.114 22 C -0.082 4.082 23 Cl -0.039 7.039 24 H 0.103 0.897 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.182 0.818 28 H 0.175 0.825 29 H 0.140 0.860 30 H 0.186 0.814 31 H 0.254 0.746 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -33.920 -6.925 -0.057 34.620 hybrid contribution 0.639 0.361 0.018 0.734 sum -33.281 -6.564 -0.040 33.922 Atomic orbital electron populations 1.20977 0.88712 1.04365 1.03767 1.20294 0.98108 0.91247 0.97540 1.21310 0.93778 0.98097 0.99521 1.21851 0.94757 0.98039 0.96354 1.18879 0.91871 0.93592 1.03339 1.22281 0.92032 0.98682 0.91184 1.22956 0.90859 1.00972 1.06982 1.19006 0.89553 0.83227 0.75880 1.90783 1.71780 1.32943 1.52833 1.45946 1.07372 1.09080 1.73522 1.21045 0.78626 0.98537 0.99915 1.19652 0.94346 0.92792 0.98213 1.21270 0.91696 0.93329 1.51625 0.95471 1.26133 0.95748 1.04026 0.93657 1.70087 1.08663 1.28416 1.51939 0.85503 0.79703 0.77091 0.79354 1.18952 1.21346 1.15719 1.21365 0.92338 0.98886 0.98785 1.20833 0.92176 0.87527 1.07624 1.98363 1.76290 1.32321 1.96969 0.89673 0.91119 0.89100 0.81813 0.82496 0.86001 0.81445 0.74634 0.93859 0.93864 0.94296 0.94446 0.92344 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.60 71.24 0.68 -0.29 16 2 C -0.07 -0.88 5.89 -19.76 -0.12 -1.00 16 3 C -0.11 -1.11 9.67 22.22 0.21 -0.90 16 4 C -0.09 -1.13 9.41 22.57 0.21 -0.92 16 5 C -0.08 -1.28 5.87 -20.15 -0.12 -1.40 16 6 C -0.02 -0.45 9.46 23.84 0.23 -0.22 16 7 C -0.20 -4.14 9.41 23.62 0.22 -3.92 16 8 C 0.53 16.85 7.74 86.37 0.67 17.52 16 9 O -0.60 -24.79 16.23 -4.32 -0.07 -24.86 16 10 N -0.71 -21.92 5.55 -467.33 -2.59 -24.51 16 11 C 0.14 5.85 5.61 86.38 0.48 6.34 16 12 C -0.01 -0.54 4.16 29.85 0.12 -0.42 16 13 C -0.54 -30.92 9.66 25.60 0.25 -30.67 16 14 H 0.03 1.75 7.99 -2.91 -0.02 1.72 16 15 C 0.00 0.08 5.47 84.66 0.46 0.54 16 16 N -0.95 -59.37 13.96 21.45 0.30 -59.08 16 17 Si 0.96 41.87 27.47 68.60 1.88 43.75 16 18 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 19 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.23 -8.95 6.54 99.48 0.65 -8.30 16 21 C -0.10 -1.62 9.57 22.60 0.22 -1.40 16 22 C -0.06 -0.87 6.31 22.28 0.14 -0.72 16 23 Cl -0.07 -1.04 27.27 -2.72 -0.07 -1.11 16 24 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.07 0.64 6.89 -2.39 -0.02 0.62 16 26 H 0.09 0.41 8.08 -2.39 -0.02 0.39 16 27 H 0.16 0.71 8.06 -2.91 -0.02 0.68 16 28 H 0.16 1.19 6.17 -2.91 -0.02 1.17 16 29 H 0.12 2.89 7.52 -2.91 -0.02 2.87 16 30 H 0.17 2.08 6.07 -2.91 -0.02 2.06 16 31 H 0.42 9.53 8.45 -92.71 -0.78 8.75 16 32 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.04 1.60 7.20 -2.39 -0.02 1.58 16 35 H 0.04 1.52 7.57 -2.39 -0.02 1.50 16 36 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 37 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -74.38 333.86 3.37 -71.01 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.25 Total: 12.27 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 3.67 Total: -17.47 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -2.30 Total: -83.59 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.07 Total: -24.86 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.88 Total: 43.75 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.07 Total: -1.11 kcal Total: -74.38 3.37 -71.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492500811.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.104 kcal (2) G-P(sol) polarization free energy of solvation -74.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds