Wall clock time and date at job start Tue Mar 31 2020 07:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47124 * 2 1 4 4 H 1.08996 * 109.47272 * 304.99889 * 3 2 1 5 5 C 1.50698 * 109.47448 * 184.99913 * 3 2 1 6 6 H 1.08005 * 120.00065 * 240.00511 * 5 3 2 7 7 C 1.37875 * 119.99949 * 59.72232 * 5 3 2 8 8 N 1.31511 * 120.00208 * 0.27530 * 7 5 3 9 9 Si 1.86804 * 120.00203 * 180.27860 * 7 5 3 10 10 H 1.48502 * 109.47071 * 89.99967 * 9 7 5 11 11 H 1.48497 * 109.47267 * 209.99939 * 9 7 5 12 12 H 1.48507 * 109.46844 * 330.00191 * 9 7 5 13 13 N 1.46501 * 109.47346 * 64.99563 * 3 2 1 14 14 C 1.34775 * 120.00547 * 275.00523 * 13 3 2 15 15 O 1.21703 * 119.99492 * 359.97438 * 14 13 3 16 16 C 1.46377 * 120.00225 * 179.97438 * 14 13 3 17 17 C 1.34857 * 119.99803 * 173.21426 * 16 14 13 18 18 C 1.47157 * 119.99741 * 349.03795 * 17 16 14 19 19 C 1.39864 * 120.15752 * 316.09863 * 18 17 16 20 20 C 1.37841 * 119.83851 * 179.79071 * 19 18 17 21 21 C 1.38550 * 120.15670 * 0.49407 * 20 19 18 22 22 Cl 1.73593 * 119.84050 * 179.76166 * 21 20 19 23 23 C 1.38549 * 120.31644 * 359.73942 * 21 20 19 24 24 C 1.37840 * 120.16146 * 0.02562 * 23 21 20 25 25 H 1.09009 * 109.47123 * 60.00255 * 1 2 3 26 26 H 1.08998 * 109.47087 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47646 * 300.00338 * 1 2 3 28 28 H 1.08996 * 109.47616 * 240.00156 * 2 1 3 29 29 H 1.08995 * 109.47082 * 119.99630 * 2 1 3 30 30 H 0.96995 * 120.00510 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99583 * 94.99943 * 13 3 2 32 32 H 1.08003 * 120.00321 * 353.21755 * 16 14 13 33 33 H 1.08001 * 119.99688 * 169.03373 * 17 16 14 34 34 H 1.07997 * 120.07988 * 0.02602 * 19 18 17 35 35 H 1.07991 * 119.92115 * 180.20693 * 20 19 18 36 36 H 1.07999 * 119.92192 * 179.97438 * 23 21 20 37 37 H 1.07997 * 120.08197 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1434 0.8734 -1.2252 8 7 3.4065 0.3320 -2.1703 9 14 6.0054 0.8688 -1.3750 10 1 6.5493 -0.3631 -0.7490 11 1 6.3867 0.9049 -2.8097 12 1 6.5605 2.0611 -0.6851 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6644 1.3669 15 8 -0.3421 2.6325 0.4308 16 6 0.0475 3.3184 2.6179 17 6 -1.1120 4.0032 2.6897 18 6 -1.8686 4.2997 1.4628 19 6 -1.2031 4.7524 0.3190 20 6 -1.9177 5.0240 -0.8279 21 6 -3.2932 4.8593 -0.8464 22 17 -4.1858 5.2097 -2.2934 23 6 -3.9597 4.4158 0.2844 24 6 -3.2575 4.1357 1.4370 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.8296 -0.0694 -2.9453 31 1 2.2718 2.1232 1.9977 32 1 0.6903 3.2527 3.4833 33 1 -1.4854 4.3338 3.6477 34 1 -0.1314 4.8852 0.3333 35 1 -1.4047 5.3704 -1.7129 36 1 -5.0321 4.2901 0.2631 37 1 -3.7783 3.7905 2.3178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492557398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:02 Heat of formation + Delta-G solvation = -17.314299 kcal Electronic energy + Delta-G solvation = -21007.601564 eV Core-core repulsion = 17775.426296 eV Total energy + Delta-G solvation = -3232.175268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.02113 -39.71208 -37.52623 -36.87289 -34.52109 -34.24460 -32.75963 -31.95862 -30.38313 -28.84771 -25.52026 -24.48713 -23.59864 -22.74074 -21.31670 -20.49081 -18.87564 -18.01865 -17.54570 -17.07626 -16.47292 -16.23948 -16.01224 -15.44773 -15.04648 -14.76863 -14.51828 -14.38611 -14.17786 -13.81732 -13.69383 -13.38209 -13.15378 -12.91019 -12.68998 -12.60791 -12.45759 -12.24324 -12.14085 -12.02614 -11.74997 -11.57981 -11.02767 -10.70011 -10.59637 -10.43603 -9.90195 -9.39793 -8.94947 -8.15441 -6.32653 -0.24057 0.49788 0.90126 1.18838 1.43974 1.44620 1.54780 2.37853 2.60531 2.83448 2.85345 3.14388 3.83629 3.89893 3.99706 4.18721 4.40724 4.50379 4.50988 4.59076 4.63853 4.78149 4.83965 5.03639 5.07001 5.12224 5.22557 5.31390 5.35616 5.46193 5.46755 5.57920 5.66572 5.72455 5.83260 5.93204 6.00821 6.19879 6.77096 7.12315 7.35772 7.71635 8.89529 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.004146 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.959180 B = 6752.273895 C = 7427.777776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.282 3.718 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.703 5.703 14 C 0.512 3.488 15 O -0.568 6.568 16 C -0.205 4.205 17 C -0.027 4.027 18 C -0.069 4.069 19 C -0.035 4.035 20 C -0.143 4.143 21 C -0.038 4.038 22 Cl -0.080 7.080 23 C -0.128 4.128 24 C -0.090 4.090 25 H 0.022 0.978 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.264 0.736 31 H 0.402 0.598 32 H 0.166 0.834 33 H 0.182 0.818 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.151 0.849 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.221 8.493 11.348 18.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 C 0.179 3.821 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.351 5.351 14 C 0.302 3.698 15 O -0.450 6.450 16 C -0.225 4.225 17 C -0.046 4.046 18 C -0.070 4.070 19 C -0.053 4.053 20 C -0.161 4.161 21 C -0.064 4.064 22 Cl -0.052 7.052 23 C -0.147 4.147 24 C -0.107 4.107 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.236 0.764 32 H 0.183 0.817 33 H 0.199 0.801 34 H 0.123 0.877 35 H 0.138 0.862 36 H 0.169 0.831 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.789 8.389 10.363 17.797 hybrid contribution 1.407 -0.287 -0.795 1.642 sum -10.381 8.102 9.568 16.278 Atomic orbital electron populations 1.21626 0.96886 0.98727 1.00267 1.21771 0.93756 0.99433 1.00968 1.18255 0.93275 0.88961 0.81656 0.98461 1.21615 0.91720 1.38581 1.06669 0.91148 1.25742 1.03099 0.94461 0.95087 1.70051 1.36978 1.38398 1.09985 0.85423 0.79437 0.78866 0.77084 1.19734 1.21417 1.18856 1.46279 1.15619 1.55892 1.17279 1.19178 0.81840 0.79553 0.89236 1.90854 1.51491 1.60792 1.41906 1.23294 0.99485 1.02142 0.97604 1.22685 0.91671 0.92926 0.97354 1.19273 0.94071 0.99258 0.94357 1.21017 0.98292 0.94075 0.91955 1.20898 0.92653 1.03449 0.99144 1.21113 0.92142 1.04348 0.88827 1.98337 1.75318 1.93587 1.37930 1.21120 1.01274 1.00817 0.91489 1.21478 0.92389 0.98184 0.98694 0.95863 0.94200 0.93394 0.91392 0.94326 0.92730 0.76396 0.81691 0.80059 0.87724 0.86246 0.83120 0.81897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.51 71.98 0.61 -4.70 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.75 16 3 C 0.28 14.20 2.24 44.24 0.10 14.30 16 4 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 5 C -0.55 -28.68 8.73 25.60 0.22 -28.46 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.92 -52.59 11.28 21.45 0.24 -52.35 16 9 Si 0.97 41.99 29.54 68.60 2.03 44.01 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 N -0.70 -27.65 5.02 -450.39 -2.26 -29.91 16 14 C 0.51 18.56 5.36 86.36 0.46 19.02 16 15 O -0.57 -24.43 9.29 -4.36 -0.04 -24.47 16 16 C -0.20 -4.93 9.91 23.61 0.23 -4.70 16 17 C -0.03 -0.55 9.81 23.84 0.23 -0.32 16 18 C -0.07 -1.84 4.53 -20.15 -0.09 -1.93 16 19 C -0.03 -1.12 6.60 22.57 0.15 -0.97 16 20 C -0.14 -4.62 9.81 22.25 0.22 -4.40 16 21 C -0.04 -1.09 6.33 22.42 0.14 -0.95 16 22 Cl -0.08 -2.14 28.95 -2.72 -0.08 -2.22 16 23 C -0.13 -3.13 9.81 22.25 0.22 -2.91 16 24 C -0.09 -2.02 9.79 22.57 0.22 -1.80 16 25 H 0.02 1.13 7.84 -2.38 -0.02 1.11 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 2.06 5.64 -2.39 -0.01 2.05 16 28 H 0.07 3.78 5.94 -2.39 -0.01 3.77 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.40 13.34 8.52 -92.71 -0.79 12.55 16 32 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 34 H 0.10 3.68 7.03 -2.91 -0.02 3.66 16 35 H 0.12 3.86 8.06 -2.92 -0.02 3.84 16 36 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -66.50 322.73 3.52 -62.98 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.30 Total: 24.22 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 3.34 Total: -22.26 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -2.02 Total: -82.26 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.04 Total: -24.47 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.08 Total: -2.22 kcal Total: -66.50 3.52 -62.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492557398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.665 kcal (2) G-P(sol) polarization free energy of solvation -66.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds