Wall clock time and date at job start Tue Mar 31 2020 07:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47059 * 2 1 4 4 H 1.09003 * 109.46938 * 55.00260 * 3 2 1 5 5 C 1.50694 * 109.47022 * 174.99725 * 3 2 1 6 6 H 1.08001 * 119.99660 * 120.00019 * 5 3 2 7 7 C 1.37878 * 120.00582 * 300.00217 * 5 3 2 8 8 N 1.31515 * 120.00361 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99663 * 359.97438 * 7 5 3 10 10 H 1.48513 * 109.47055 * 89.99754 * 9 7 5 11 11 H 1.48495 * 109.47225 * 209.99933 * 9 7 5 12 12 H 1.48501 * 109.47100 * 330.00356 * 9 7 5 13 13 N 1.46500 * 109.47493 * 295.00192 * 3 2 1 14 14 C 1.34774 * 120.00116 * 84.99596 * 13 3 2 15 15 O 1.21703 * 120.00000 * 0.02562 * 14 13 3 16 16 C 1.46385 * 119.99922 * 180.02562 * 14 13 3 17 17 C 1.34852 * 119.99892 * 186.68154 * 16 14 13 18 18 C 1.47160 * 120.00053 * 11.63773 * 17 16 14 19 19 C 1.39864 * 120.15777 * 226.03913 * 18 17 16 20 20 C 1.37840 * 119.83755 * 179.78764 * 19 18 17 21 21 C 1.38548 * 120.16183 * 0.49508 * 20 19 18 22 22 Cl 1.73595 * 119.84623 * 179.76127 * 21 20 19 23 23 C 1.38549 * 120.31292 * 359.73711 * 21 20 19 24 24 C 1.37843 * 120.15890 * 0.02735 * 23 21 20 25 25 H 1.08999 * 109.46833 * 59.99570 * 1 2 3 26 26 H 1.08997 * 109.46962 * 300.00174 * 1 2 3 27 27 H 1.08995 * 109.47296 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46657 * 119.99913 * 2 1 3 29 29 H 1.09002 * 109.46630 * 240.00182 * 2 1 3 30 30 H 0.96997 * 120.00009 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99552 * 265.00524 * 13 3 2 32 32 H 1.07993 * 120.00061 * 6.68171 * 16 14 13 33 33 H 1.07999 * 120.00000 * 191.63793 * 17 16 14 34 34 H 1.07995 * 120.07899 * 0.03237 * 19 18 17 35 35 H 1.08005 * 119.91973 * 180.21040 * 20 19 18 36 36 H 1.07995 * 119.92313 * 179.97438 * 23 21 20 37 37 H 1.07996 * 120.07931 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8796 1.3358 9 14 3.0964 0.1101 2.5707 10 1 2.8744 -1.3261 2.2645 11 1 3.7941 0.2359 3.8755 12 1 1.7881 0.8094 2.6395 13 7 1.6525 2.0976 -1.2518 14 6 0.4352 2.6645 -1.3669 15 8 -0.3420 2.6326 -0.4308 16 6 0.0477 3.3185 -2.6179 17 6 -1.1128 4.0015 -2.6904 18 6 -1.8634 4.3092 -1.4626 19 6 -3.2448 4.0964 -1.4116 20 6 -3.9407 4.3827 -0.2567 21 6 -3.2767 4.8899 0.8485 22 17 -4.1621 5.2535 2.2967 23 6 -1.9091 5.1077 0.8035 24 6 -1.1996 4.8214 -0.3430 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 5.8771 0.4811 2.1124 31 1 2.2720 2.1232 -1.9977 32 1 0.6913 3.2541 -3.4827 33 1 -1.4914 4.3226 -3.6495 34 1 -3.7644 3.7049 -2.2736 35 1 -5.0069 4.2157 -0.2147 36 1 -1.3980 5.5036 1.6686 37 1 -0.1337 4.9921 -0.3768 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492557399.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:06 Heat of formation + Delta-G solvation = -13.284671 kcal Electronic energy + Delta-G solvation = -21105.266653 eV Core-core repulsion = 17873.266122 eV Total energy + Delta-G solvation = -3232.000530 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.06783 -39.78751 -37.57093 -37.01051 -34.56191 -34.35620 -33.16796 -31.97325 -30.44014 -29.28733 -25.39763 -24.35292 -23.61928 -22.93216 -21.50317 -20.60701 -19.03679 -18.18124 -17.56496 -17.40731 -16.57051 -16.32759 -15.92027 -15.58842 -15.10169 -14.94047 -14.73675 -14.43390 -14.22429 -13.99481 -13.91616 -13.60248 -13.54611 -12.95482 -12.78595 -12.62687 -12.47519 -12.36713 -12.25553 -11.86263 -11.75889 -11.38110 -11.22158 -10.86670 -10.70387 -10.53716 -9.94828 -9.52695 -9.00608 -8.39217 -6.43729 -0.23493 0.48068 0.85116 1.18439 1.24326 1.32889 1.42257 2.24084 2.53550 2.67063 2.81860 2.97559 3.81481 3.89156 3.98448 4.10784 4.25294 4.33548 4.39303 4.47216 4.52953 4.62900 4.82244 4.86118 5.01342 5.02970 5.09911 5.13145 5.21679 5.29797 5.34318 5.43169 5.45909 5.53599 5.68923 5.73546 5.92614 6.17736 6.59347 7.01355 7.20757 7.60236 8.76107 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.004698 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.522901 B = 5958.541574 C = 6819.098446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.136 4.136 3 C 0.253 3.747 4 H 0.020 0.980 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.031 3.969 8 N -0.934 5.934 9 Si 0.934 3.066 10 H -0.262 1.262 11 H -0.295 1.295 12 H -0.262 1.262 13 N -0.698 5.698 14 C 0.518 3.482 15 O -0.565 6.565 16 C -0.205 4.205 17 C -0.025 4.025 18 C -0.063 4.063 19 C -0.090 4.090 20 C -0.125 4.125 21 C -0.040 4.040 22 Cl -0.081 7.081 23 C -0.137 4.137 24 C -0.046 4.046 25 H 0.058 0.942 26 H 0.033 0.967 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.269 0.731 31 H 0.404 0.596 32 H 0.165 0.835 33 H 0.182 0.818 34 H 0.162 0.838 35 H 0.150 0.850 36 H 0.122 0.878 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.401 6.965 -9.229 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.175 4.175 3 C 0.148 3.852 4 H 0.038 0.962 5 C -0.570 4.570 6 H 0.075 0.925 7 C -0.168 4.168 8 N -0.573 5.573 9 Si 0.762 3.238 10 H -0.188 1.188 11 H -0.222 1.222 12 H -0.187 1.187 13 N -0.347 5.347 14 C 0.308 3.692 15 O -0.447 6.447 16 C -0.225 4.225 17 C -0.044 4.044 18 C -0.064 4.064 19 C -0.108 4.108 20 C -0.143 4.143 21 C -0.067 4.067 22 Cl -0.052 7.052 23 C -0.156 4.156 24 C -0.065 4.065 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.239 0.761 32 H 0.182 0.818 33 H 0.199 0.801 34 H 0.180 0.820 35 H 0.168 0.832 36 H 0.140 0.860 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.836 6.908 -8.318 21.718 hybrid contribution 0.719 -0.468 1.080 1.379 sum -18.117 6.440 -7.237 20.545 Atomic orbital electron populations 1.21712 0.95105 1.00166 1.01599 1.22196 0.95865 0.98709 1.00703 1.18680 0.92844 0.89470 0.84198 0.96176 1.21338 0.90616 1.38242 1.06768 0.92527 1.25503 0.95617 0.95945 0.99765 1.69972 1.10207 1.46295 1.30856 0.86073 0.79295 0.79908 0.78520 1.18767 1.22214 1.18722 1.46015 1.15887 1.56080 1.16689 1.19134 0.81530 0.79278 0.89272 1.90856 1.51456 1.60701 1.41650 1.23253 0.99364 1.02316 0.97561 1.22686 0.91621 0.92673 0.97433 1.19263 0.94041 0.98658 0.94391 1.21459 0.92496 0.98391 0.98489 1.21126 1.01275 1.00186 0.91759 1.21115 0.92410 1.04153 0.88985 1.98342 1.75708 1.93389 1.37771 1.20923 0.92693 1.02901 0.99114 1.21051 0.98373 0.95064 0.91990 0.92314 0.94810 0.92840 0.94287 0.91473 0.92151 0.76064 0.81789 0.80113 0.82033 0.83225 0.85957 0.87398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 8.51 71.98 0.61 -4.33 16 2 C -0.14 -5.85 5.11 30.60 0.16 -5.69 16 3 C 0.25 11.71 1.83 44.24 0.08 11.79 16 4 H 0.02 1.06 6.63 -2.39 -0.02 1.05 16 5 C -0.53 -28.74 9.31 25.60 0.24 -28.50 16 6 H 0.06 3.25 7.98 -2.91 -0.02 3.23 16 7 C 0.03 1.77 5.45 84.65 0.46 2.23 16 8 N -0.93 -56.17 13.96 21.45 0.30 -55.87 16 9 Si 0.93 45.38 24.41 68.60 1.67 47.06 16 10 H -0.26 -12.03 6.83 99.48 0.68 -11.35 16 11 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 12 H -0.26 -12.75 6.53 99.48 0.65 -12.10 16 13 N -0.70 -25.78 5.02 -450.37 -2.26 -28.04 16 14 C 0.52 17.17 5.45 86.36 0.47 17.65 16 15 O -0.56 -21.94 9.53 -4.36 -0.04 -21.98 16 16 C -0.20 -4.50 9.91 23.61 0.23 -4.27 16 17 C -0.02 -0.46 9.79 23.84 0.23 -0.22 16 18 C -0.06 -1.53 4.40 -20.15 -0.09 -1.62 16 19 C -0.09 -1.86 9.79 22.57 0.22 -1.64 16 20 C -0.12 -2.79 9.81 22.25 0.22 -2.57 16 21 C -0.04 -1.07 6.33 22.42 0.14 -0.93 16 22 Cl -0.08 -1.99 28.95 -2.72 -0.08 -2.07 16 23 C -0.14 -4.06 9.81 22.25 0.22 -3.84 16 24 C -0.05 -1.36 6.73 22.57 0.15 -1.21 16 25 H 0.06 2.18 5.64 -2.39 -0.01 2.16 16 26 H 0.03 1.40 7.84 -2.39 -0.02 1.39 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.04 1.78 3.22 -2.39 -0.01 1.77 16 29 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.40 13.12 8.52 -92.71 -0.79 12.33 16 32 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.12 3.56 8.06 -2.91 -0.02 3.53 16 37 H 0.11 3.42 7.31 -2.91 -0.02 3.40 16 Total: -1.00 -67.58 316.59 3.16 -64.42 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.22 Total: 19.62 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 3.35 Total: -23.13 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -1.96 Total: -83.91 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.04 Total: -21.98 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.67 Total: 47.06 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.08 Total: -2.07 kcal Total: -67.58 3.16 -64.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492557399.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.135 kcal (2) G-P(sol) polarization free energy of solvation -67.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds