Wall clock time and date at job start Tue Mar 31 2020 07:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47016 * 2 1 4 4 H 1.08998 * 109.46913 * 304.76073 * 3 2 1 5 5 C 1.50699 * 109.47148 * 184.75940 * 3 2 1 6 6 H 1.08001 * 119.99657 * 275.00759 * 5 3 2 7 7 C 1.37873 * 120.00217 * 95.00283 * 5 3 2 8 8 N 1.31517 * 119.99863 * 184.80667 * 7 5 3 9 9 Si 1.86797 * 119.99912 * 4.80354 * 7 5 3 10 10 H 1.48512 * 109.46899 * 84.80662 * 9 7 5 11 11 H 1.48506 * 109.47281 * 204.80207 * 9 7 5 12 12 H 1.48494 * 109.47696 * 324.80626 * 9 7 5 13 13 N 1.46502 * 109.47073 * 64.75712 * 3 2 1 14 14 C 1.34781 * 119.99747 * 274.99903 * 13 3 2 15 15 O 1.21698 * 120.00048 * 0.02562 * 14 13 3 16 16 C 1.46427 * 119.99791 * 179.97438 * 14 13 3 17 17 C 1.34805 * 120.00157 * 173.69810 * 16 14 13 18 18 C 1.47210 * 119.99667 * 348.47354 * 17 16 14 19 19 C 1.39862 * 120.16265 * 133.84632 * 18 17 16 20 20 C 1.37870 * 119.85195 * 179.97438 * 19 18 17 21 21 C 1.38403 * 120.19031 * 359.97253 * 20 19 18 22 22 C 1.38490 * 120.32880 * 0.02891 * 21 20 19 23 23 Cl 1.73604 * 119.92983 * 179.97438 * 22 21 20 24 24 C 1.38040 * 120.14259 * 359.73293 * 22 21 20 25 25 H 1.09005 * 109.47188 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47100 * 60.00003 * 1 2 3 27 27 H 1.09001 * 109.47057 * 300.00125 * 1 2 3 28 28 H 1.09000 * 109.47169 * 119.99447 * 2 1 3 29 29 H 1.08993 * 109.47289 * 240.00125 * 2 1 3 30 30 H 0.97000 * 119.99283 * 179.97438 * 8 7 5 31 31 H 0.96991 * 120.00100 * 95.00284 * 13 3 2 32 32 H 1.08002 * 120.00059 * 353.70445 * 16 14 13 33 33 H 1.08001 * 120.00423 * 168.46723 * 17 16 14 34 34 H 1.08001 * 120.07297 * 359.94903 * 19 18 17 35 35 H 1.08005 * 119.90844 * 179.97438 * 20 19 18 36 36 H 1.08000 * 119.83891 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.09575 * 180.27729 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6087 1.9804 -0.8443 5 6 3.5424 1.4442 -0.1179 6 1 4.1535 1.3375 0.7662 7 6 4.1367 1.5820 -1.3543 8 7 5.4435 1.4888 -1.4697 9 14 3.0859 1.9008 -2.8654 10 1 2.8195 3.3569 -2.9848 11 1 3.8039 1.4280 -4.0764 12 1 1.7991 1.1711 -2.7365 13 7 1.6474 2.0993 1.2493 14 6 0.4296 2.6664 1.3588 15 8 -0.3440 2.6324 0.4199 16 6 0.0370 3.3223 2.6076 17 6 -1.1270 3.9987 2.6768 18 6 -1.8794 4.2963 1.4470 19 6 -3.2592 4.0731 1.3960 20 6 -3.9576 4.3546 0.2411 21 6 -3.2974 4.8575 -0.8665 22 6 -1.9314 5.0814 -0.8244 23 17 -1.1136 5.7119 -2.2200 24 6 -1.2194 4.8090 0.3264 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 5.8616 1.5854 -2.3397 31 1 2.2639 2.1261 1.9977 32 1 0.6801 3.2643 3.4734 33 1 -1.5077 4.3221 3.6343 34 1 -3.7763 3.6808 2.2592 35 1 -5.0231 4.1823 0.2005 36 1 -3.8502 5.0764 -1.7681 37 1 -0.1549 4.9881 0.3598 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492564921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:09 Heat of formation + Delta-G solvation = -2.617551 kcal Electronic energy + Delta-G solvation = -21342.905764 eV Core-core repulsion = 18111.367795 eV Total energy + Delta-G solvation = -3231.537969 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.77807 -38.54017 -36.28166 -35.34146 -33.50479 -32.36217 -31.49375 -30.58277 -29.50042 -27.50700 -24.12414 -22.77194 -22.36134 -21.57881 -19.63473 -19.27220 -17.66285 -16.70183 -16.08826 -15.61336 -15.26981 -15.16531 -14.42955 -14.17546 -13.77754 -13.58681 -13.42885 -13.12183 -12.77018 -12.43186 -12.29907 -11.89299 -11.79174 -11.54013 -11.39603 -11.26646 -10.93367 -10.70333 -10.66462 -10.60858 -10.00332 -9.84324 -9.79253 -9.24793 -9.16967 -8.70886 -8.54100 -8.07548 -7.87280 -6.23660 -4.27231 0.84566 1.42833 1.92995 2.37733 3.27800 3.35528 3.43790 3.81551 3.88607 4.09503 4.33336 4.70890 4.91402 5.09103 5.12296 5.24128 5.29552 5.49862 5.57655 5.74991 5.95918 6.07258 6.10428 6.17826 6.20595 6.28697 6.39864 6.46943 6.60581 6.67949 6.80858 6.92823 6.99328 7.03098 7.30502 7.37972 7.58365 8.15281 8.58834 8.77314 9.01650 9.39049 10.87986 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.006091 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.743635 B = 4595.665877 C = 5564.391962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.237 3.763 4 H 0.052 0.948 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.083 3.917 8 N -0.889 5.889 9 Si 0.870 3.130 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.259 1.259 13 N -0.695 5.695 14 C 0.518 3.482 15 O -0.539 6.539 16 C -0.188 4.188 17 C -0.053 4.053 18 C -0.041 4.041 19 C -0.103 4.103 20 C -0.121 4.121 21 C -0.108 4.108 22 C -0.039 4.039 23 Cl -0.078 7.078 24 C -0.030 4.030 25 H 0.027 0.973 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.267 0.733 31 H 0.392 0.608 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.966 6.462 7.066 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C 0.135 3.865 4 H 0.070 0.930 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.122 4.122 8 N -0.525 5.525 9 Si 0.697 3.303 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.183 1.183 13 N -0.342 5.342 14 C 0.305 3.695 15 O -0.420 6.420 16 C -0.209 4.209 17 C -0.073 4.073 18 C -0.042 4.042 19 C -0.121 4.121 20 C -0.140 4.140 21 C -0.127 4.127 22 C -0.066 4.066 23 Cl -0.049 7.049 24 C -0.049 4.049 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.226 0.774 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.217 6.464 6.105 18.494 hybrid contribution 0.146 0.050 -0.586 0.606 sum -16.071 6.514 5.519 18.198 Atomic orbital electron populations 1.21883 0.97325 0.98663 1.02071 1.22062 0.93708 0.99478 1.01083 1.19158 0.95239 0.88995 0.83133 0.93017 1.21010 0.88654 1.51812 0.95418 0.90411 1.24919 0.94805 0.93640 0.98796 1.69884 1.09200 1.48405 1.25003 0.86948 0.81177 0.79806 0.82399 1.19709 1.21276 1.18317 1.46610 1.14356 1.55110 1.18107 1.18443 0.82917 0.80229 0.87881 1.90854 1.51177 1.60129 1.39832 1.23359 0.97762 1.00616 0.99126 1.22198 0.93308 0.95391 0.96380 1.18722 0.93035 0.98920 0.93486 1.21194 0.93028 0.99572 0.98310 1.20829 0.99714 1.00576 0.92855 1.21000 0.92375 1.00145 0.99205 1.20685 0.92870 1.03881 0.89169 1.98365 1.79478 1.85477 1.41624 1.21007 0.99169 0.94384 0.90328 0.95347 0.93094 0.93130 0.93126 0.92260 0.92264 0.77435 0.85143 0.84823 0.85859 0.85639 0.85652 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.51 37.16 0.32 -2.53 16 2 C -0.12 -2.69 5.59 -26.73 -0.15 -2.84 16 3 C 0.24 5.51 1.90 -69.08 -0.13 5.38 16 4 H 0.05 1.33 4.73 -51.93 -0.25 1.08 16 5 C -0.53 -14.13 9.05 -34.44 -0.31 -14.44 16 6 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 7 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 8 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 9 Si 0.87 21.84 26.99 -169.99 -4.59 17.25 16 10 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.26 -6.43 6.82 56.52 0.39 -6.04 16 13 N -0.69 -13.42 5.01 -56.32 -0.28 -13.71 16 14 C 0.52 9.29 5.46 -12.96 -0.07 9.22 16 15 O -0.54 -11.03 9.50 5.19 0.05 -10.98 16 16 C -0.19 -2.48 9.91 -37.50 -0.37 -2.86 16 17 C -0.05 -0.63 9.79 -37.16 -0.36 -0.99 16 18 C -0.04 -0.58 4.40 -105.06 -0.46 -1.04 16 19 C -0.10 -1.25 9.80 -39.11 -0.38 -1.63 16 20 C -0.12 -1.43 10.03 -39.66 -0.40 -1.83 16 21 C -0.11 -1.45 9.82 -39.43 -0.39 -1.84 16 22 C -0.04 -0.62 6.31 -39.56 -0.25 -0.87 16 23 Cl -0.08 -1.25 28.95 -51.86 -1.50 -2.75 16 24 C -0.03 -0.48 6.50 -39.07 -0.25 -0.74 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.10 7.83 -51.93 -0.41 0.69 16 27 H 0.05 1.00 5.65 -51.93 -0.29 0.70 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.39 6.71 8.57 -40.82 -0.35 6.36 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.13 2.18 7.31 -52.49 -0.38 1.80 16 LS Contribution 323.16 15.07 4.87 4.87 Total: -1.00 -30.95 323.16 -8.63 -39.57 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.64 Total: 5.92 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -3.31 Total: -14.77 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.49 Total: -39.11 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.05 Total: -10.98 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.59 Total: 17.25 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.50 Total: -2.75 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.95 -8.63 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492564921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.956 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds