Wall clock time and date at job start Tue Mar 31 2020 07:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47016 * 2 1 4 4 H 1.08998 * 109.46913 * 304.76073 * 3 2 1 5 5 C 1.50699 * 109.47148 * 184.75940 * 3 2 1 6 6 H 1.08001 * 119.99657 * 275.00759 * 5 3 2 7 7 C 1.37873 * 120.00217 * 95.00283 * 5 3 2 8 8 N 1.31517 * 119.99863 * 184.80667 * 7 5 3 9 9 Si 1.86797 * 119.99912 * 4.80354 * 7 5 3 10 10 H 1.48512 * 109.46899 * 84.80662 * 9 7 5 11 11 H 1.48506 * 109.47281 * 204.80207 * 9 7 5 12 12 H 1.48494 * 109.47696 * 324.80626 * 9 7 5 13 13 N 1.46502 * 109.47073 * 64.75712 * 3 2 1 14 14 C 1.34781 * 119.99747 * 274.99903 * 13 3 2 15 15 O 1.21698 * 120.00048 * 0.02562 * 14 13 3 16 16 C 1.46427 * 119.99791 * 179.97438 * 14 13 3 17 17 C 1.34805 * 120.00157 * 173.69810 * 16 14 13 18 18 C 1.47210 * 119.99667 * 348.47354 * 17 16 14 19 19 C 1.39862 * 120.16265 * 133.84632 * 18 17 16 20 20 C 1.37870 * 119.85195 * 179.97438 * 19 18 17 21 21 C 1.38403 * 120.19031 * 359.97253 * 20 19 18 22 22 C 1.38490 * 120.32880 * 0.02891 * 21 20 19 23 23 Cl 1.73604 * 119.92983 * 179.97438 * 22 21 20 24 24 C 1.38040 * 120.14259 * 359.73293 * 22 21 20 25 25 H 1.09005 * 109.47188 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47100 * 60.00003 * 1 2 3 27 27 H 1.09001 * 109.47057 * 300.00125 * 1 2 3 28 28 H 1.09000 * 109.47169 * 119.99447 * 2 1 3 29 29 H 1.08993 * 109.47289 * 240.00125 * 2 1 3 30 30 H 0.97000 * 119.99283 * 179.97438 * 8 7 5 31 31 H 0.96991 * 120.00100 * 95.00284 * 13 3 2 32 32 H 1.08002 * 120.00059 * 353.70445 * 16 14 13 33 33 H 1.08001 * 120.00423 * 168.46723 * 17 16 14 34 34 H 1.08001 * 120.07297 * 359.94903 * 19 18 17 35 35 H 1.08005 * 119.90844 * 179.97438 * 20 19 18 36 36 H 1.08000 * 119.83891 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.09575 * 180.27729 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6087 1.9804 -0.8443 5 6 3.5424 1.4442 -0.1179 6 1 4.1535 1.3375 0.7662 7 6 4.1367 1.5820 -1.3543 8 7 5.4435 1.4888 -1.4697 9 14 3.0859 1.9008 -2.8654 10 1 2.8195 3.3569 -2.9848 11 1 3.8039 1.4280 -4.0764 12 1 1.7991 1.1711 -2.7365 13 7 1.6474 2.0993 1.2493 14 6 0.4296 2.6664 1.3588 15 8 -0.3440 2.6324 0.4199 16 6 0.0370 3.3223 2.6076 17 6 -1.1270 3.9987 2.6768 18 6 -1.8794 4.2963 1.4470 19 6 -3.2592 4.0731 1.3960 20 6 -3.9576 4.3546 0.2411 21 6 -3.2974 4.8575 -0.8665 22 6 -1.9314 5.0814 -0.8244 23 17 -1.1136 5.7119 -2.2200 24 6 -1.2194 4.8090 0.3264 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 5.8616 1.5854 -2.3397 31 1 2.2639 2.1261 1.9977 32 1 0.6801 3.2643 3.4734 33 1 -1.5077 4.3221 3.6343 34 1 -3.7763 3.6808 2.2592 35 1 -5.0231 4.1823 0.2005 36 1 -3.8502 5.0764 -1.7681 37 1 -0.1549 4.9881 0.3598 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492564921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:09 Heat of formation + Delta-G solvation = -21.185092 kcal Electronic energy + Delta-G solvation = -21343.710913 eV Core-core repulsion = 18111.367795 eV Total energy + Delta-G solvation = -3232.343118 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.04600 -39.75645 -37.48983 -36.95183 -34.64347 -34.36352 -33.09759 -31.61360 -30.62858 -29.33487 -25.45358 -24.44499 -23.42152 -22.83640 -21.33892 -20.62736 -19.16201 -18.23325 -17.44555 -17.13272 -16.51625 -16.37650 -15.93370 -15.71368 -15.04787 -14.81696 -14.73896 -14.62702 -14.19943 -13.82815 -13.75311 -13.68597 -13.44432 -12.97836 -12.64383 -12.54480 -12.39383 -12.38045 -12.30006 -11.91015 -11.80460 -11.67702 -11.20515 -10.87322 -10.82860 -10.54330 -9.75549 -9.40325 -9.11894 -8.41674 -6.45700 -0.17847 0.37677 0.91193 1.23456 1.24281 1.28983 1.39341 2.23026 2.54921 2.64482 2.82756 3.05171 3.75519 3.95021 4.09949 4.18386 4.31857 4.33471 4.42426 4.48620 4.57907 4.65129 4.74705 4.84670 4.98648 5.10211 5.17501 5.23163 5.27307 5.31277 5.39108 5.43317 5.50629 5.57061 5.63505 5.84358 5.96471 6.15981 6.60047 7.04136 7.20894 7.61926 8.73544 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.006091 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.743635 B = 4595.665877 C = 5564.391962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.122 4.122 3 C 0.245 3.755 4 H 0.027 0.973 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.037 3.963 8 N -0.929 5.929 9 Si 0.919 3.081 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.258 1.258 13 N -0.701 5.701 14 C 0.514 3.486 15 O -0.566 6.566 16 C -0.206 4.206 17 C -0.027 4.027 18 C -0.059 4.059 19 C -0.098 4.098 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.062 4.062 23 Cl -0.097 7.097 24 C -0.054 4.054 25 H 0.052 0.948 26 H 0.029 0.971 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.269 0.731 31 H 0.403 0.597 32 H 0.164 0.836 33 H 0.183 0.817 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.141 0.859 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.046 6.330 9.078 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.141 3.859 4 H 0.045 0.955 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.163 4.163 8 N -0.568 5.568 9 Si 0.745 3.255 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.182 1.182 13 N -0.350 5.350 14 C 0.304 3.696 15 O -0.448 6.448 16 C -0.226 4.226 17 C -0.046 4.046 18 C -0.059 4.059 19 C -0.116 4.116 20 C -0.134 4.134 21 C -0.135 4.135 22 C -0.089 4.089 23 Cl -0.068 7.068 24 C -0.073 4.073 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.237 0.763 32 H 0.182 0.818 33 H 0.200 0.800 34 H 0.177 0.823 35 H 0.179 0.821 36 H 0.158 0.842 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.312 6.340 8.141 21.896 hybrid contribution 0.982 0.137 -1.135 1.507 sum -18.330 6.476 7.006 20.665 Atomic orbital electron populations 1.21710 0.95621 0.99942 1.01149 1.21967 0.95127 0.98126 1.00882 1.18805 0.92757 0.90069 0.84302 0.95528 1.21255 0.90500 1.50006 0.94396 0.92479 1.25508 0.95506 0.94147 1.01168 1.69973 1.10487 1.50703 1.25655 0.86171 0.79984 0.79090 0.80268 1.20436 1.20425 1.18174 1.46336 1.15673 1.55937 1.17043 1.19176 0.81734 0.79427 0.89241 1.90847 1.51782 1.60841 1.41362 1.23307 0.99301 1.02285 0.97729 1.22685 0.91745 0.92803 0.97353 1.19080 0.94302 0.98897 0.93644 1.21646 0.92224 0.98132 0.99574 1.21304 1.01442 0.98714 0.91929 1.21300 0.91487 1.00043 1.00687 1.20941 0.93974 1.05276 0.88692 1.98347 1.80050 1.85837 1.42600 1.20942 0.98150 0.96461 0.91758 0.92867 0.95207 0.92765 0.92044 0.93720 0.92142 0.76256 0.81820 0.79988 0.82283 0.82067 0.84167 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 8.51 71.98 0.61 -4.29 16 2 C -0.12 -5.23 5.59 30.60 0.17 -5.05 16 3 C 0.25 11.48 1.90 44.25 0.08 11.57 16 4 H 0.03 1.40 4.73 -2.39 -0.01 1.39 16 5 C -0.52 -28.45 9.05 25.60 0.23 -28.21 16 6 H 0.06 3.29 8.06 -2.91 -0.02 3.26 16 7 C 0.04 2.12 5.47 84.65 0.46 2.59 16 8 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 9 Si 0.92 46.32 26.99 68.60 1.85 48.17 16 10 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.26 -12.78 6.82 99.48 0.68 -12.10 16 13 N -0.70 -26.86 5.01 -450.31 -2.26 -29.12 16 14 C 0.51 17.91 5.46 86.37 0.47 18.38 16 15 O -0.57 -22.90 9.50 -4.34 -0.04 -22.94 16 16 C -0.21 -4.85 9.91 23.62 0.23 -4.62 16 17 C -0.03 -0.52 9.79 23.84 0.23 -0.29 16 18 C -0.06 -1.49 4.40 -20.15 -0.09 -1.57 16 19 C -0.10 -1.97 9.80 22.58 0.22 -1.75 16 20 C -0.12 -2.31 10.03 22.22 0.22 -2.09 16 21 C -0.12 -2.91 9.82 22.37 0.22 -2.69 16 22 C -0.06 -1.95 6.31 22.28 0.14 -1.81 16 23 Cl -0.10 -3.19 28.95 -2.72 -0.08 -3.27 16 24 C -0.05 -1.73 6.50 22.60 0.15 -1.58 16 25 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.03 1.25 7.83 -2.39 -0.02 1.23 16 27 H 0.05 2.04 5.65 -2.39 -0.01 2.03 16 28 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.40 13.57 8.57 -92.71 -0.79 12.78 16 32 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.10 3.57 7.31 -2.91 -0.02 3.55 16 Total: -1.00 -69.79 323.16 3.40 -66.39 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.26 Total: 18.05 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 3.36 Total: -21.42 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -1.96 Total: -84.97 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.04 Total: -22.94 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.85 Total: 48.17 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.08 Total: -3.27 kcal Total: -69.79 3.40 -66.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492564921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.209 kcal (2) G-P(sol) polarization free energy of solvation -69.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds