Wall clock time and date at job start Tue Mar 31 2020 07:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47173 * 2 1 4 4 H 1.08999 * 109.47078 * 304.89575 * 3 2 1 5 5 C 1.50699 * 109.46868 * 184.89824 * 3 2 1 6 6 H 1.08003 * 120.00264 * 245.45189 * 5 3 2 7 7 C 1.37878 * 119.99913 * 65.45544 * 5 3 2 8 8 N 1.31513 * 120.00234 * 9.46524 * 7 5 3 9 9 Si 1.86804 * 119.99810 * 189.46795 * 7 5 3 10 10 H 1.48500 * 109.47227 * 84.99576 * 9 7 5 11 11 H 1.48506 * 109.46735 * 204.99028 * 9 7 5 12 12 H 1.48496 * 109.47088 * 324.99273 * 9 7 5 13 13 N 1.46497 * 109.47018 * 64.90104 * 3 2 1 14 14 C 1.34776 * 119.99944 * 274.99505 * 13 3 2 15 15 O 1.21700 * 119.99926 * 0.02562 * 14 13 3 16 16 C 1.46430 * 120.00211 * 180.02562 * 14 13 3 17 17 C 1.34804 * 119.99997 * 180.02562 * 16 14 13 18 18 C 1.47212 * 119.99932 * 180.02562 * 17 16 14 19 19 C 1.39862 * 120.16142 * 0.25619 * 18 17 16 20 20 C 1.37875 * 119.85036 * 180.27909 * 19 18 17 21 21 C 1.38407 * 120.18658 * 359.71908 * 20 19 18 22 22 C 1.38492 * 120.33071 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 119.92561 * 179.97438 * 22 21 20 24 24 C 1.38034 * 120.14411 * 359.97438 * 22 21 20 25 25 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47216 * 300.00272 * 1 2 3 27 27 H 1.09000 * 109.47043 * 59.99938 * 1 2 3 28 28 H 1.08996 * 109.47216 * 239.99727 * 2 1 3 29 29 H 1.09000 * 109.47043 * 120.00062 * 2 1 3 30 30 H 0.96998 * 120.00272 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00384 * 94.99749 * 13 3 2 32 32 H 1.07998 * 119.99817 * 0.02562 * 16 14 13 33 33 H 1.07998 * 120.00186 * 359.97438 * 17 16 14 34 34 H 1.08003 * 120.07757 * 359.97438 * 19 18 17 35 35 H 1.08004 * 119.91089 * 179.69795 * 20 19 18 36 36 H 1.08002 * 119.83035 * 180.02562 * 21 20 19 37 37 H 1.08001 * 120.09124 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6069 1.9810 -0.8429 5 6 3.5422 1.4442 -0.1213 6 1 4.1494 1.8090 0.6939 7 6 4.1413 0.9800 -1.2731 8 7 3.4098 0.7114 -2.3326 9 14 5.9920 0.7326 -1.3288 10 1 6.3290 -0.6068 -0.7834 11 1 6.4619 0.8273 -2.7344 12 1 6.6562 1.7807 -0.5131 13 7 1.6505 2.0982 1.2508 14 6 0.4330 2.6652 1.3636 15 8 -0.3428 2.6322 0.4265 16 6 0.0437 3.3211 2.6136 17 6 -1.1742 3.8878 2.7265 18 6 -1.5653 4.5477 3.9830 19 6 -0.6740 4.5933 5.0598 20 6 -1.0491 5.2079 6.2356 21 6 -2.3021 5.7843 6.3506 22 6 -3.1888 5.7482 5.2873 23 17 -4.7581 6.4740 5.4433 24 6 -2.8274 5.1365 4.1039 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8312 0.3845 -3.1427 31 1 2.2687 2.1243 1.9978 32 1 0.7324 3.3508 3.4450 33 1 -1.8627 3.8585 1.8950 34 1 0.3042 4.1438 4.9723 35 1 -0.3633 5.2394 7.0694 36 1 -2.5898 6.2646 7.2741 37 1 -3.5197 5.1085 3.2754 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492564923.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:16 Heat of formation + Delta-G solvation = -16.306811 kcal Electronic energy + Delta-G solvation = -19917.237453 eV Core-core repulsion = 16685.105873 eV Total energy + Delta-G solvation = -3232.131580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.68439 -38.91875 -36.79871 -35.21697 -33.87394 -32.36047 -31.28467 -31.03007 -29.55304 -27.05382 -24.43247 -23.08651 -22.85131 -21.29805 -19.60452 -19.17552 -17.64269 -17.07351 -16.00377 -15.66704 -15.51976 -15.10089 -14.47995 -14.30917 -14.08603 -13.85156 -13.73479 -13.23107 -12.69079 -12.30762 -12.20484 -11.94513 -11.85036 -11.49568 -11.44024 -11.36664 -11.11542 -11.02381 -10.80113 -10.36533 -10.33714 -10.20616 -9.70933 -9.12778 -9.12643 -9.08510 -8.49344 -8.42860 -7.83346 -6.16035 -4.21564 0.39690 0.90939 1.81964 1.96791 3.23974 3.30922 3.32019 3.42152 3.99396 4.03538 4.34418 4.47852 4.59494 4.73358 4.88474 5.04668 5.12403 5.17110 5.38861 5.51602 5.66441 5.85030 5.89501 6.02695 6.33862 6.37448 6.38708 6.47197 6.51789 6.59215 6.98184 7.16148 7.30886 7.40055 7.60192 7.70259 7.82981 8.06075 8.65450 8.77844 9.11379 9.44430 10.92225 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.032203 B = 0.002670 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.267992 B =10483.727111 C =10997.417001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.267 3.733 4 H 0.057 0.943 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.700 5.700 14 C 0.527 3.473 15 O -0.550 6.550 16 C -0.175 4.175 17 C -0.058 4.058 18 C -0.043 4.043 19 C -0.105 4.105 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.035 4.035 23 Cl -0.072 7.072 24 C -0.095 4.095 25 H 0.023 0.977 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.958 8.367 17.312 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.165 3.835 4 H 0.075 0.925 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.346 5.346 14 C 0.313 3.687 15 O -0.430 6.430 16 C -0.196 4.196 17 C -0.078 4.078 18 C -0.044 4.044 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.061 4.061 23 Cl -0.044 7.044 24 C -0.114 4.114 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.142 0.858 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.597 8.314 16.416 21.234 hybrid contribution 1.216 -0.118 0.350 1.271 sum -9.380 8.196 16.766 20.887 Atomic orbital electron populations 1.21846 0.98010 0.98174 1.01551 1.21851 0.93000 0.99816 1.01185 1.18822 0.94386 0.88954 0.81315 0.92497 1.21173 0.90553 1.44099 1.01821 0.92085 1.24888 0.98471 0.95141 0.94976 1.69981 1.35780 1.43685 1.02157 0.86533 0.85000 0.78715 0.77282 1.20414 1.21164 1.19912 1.46424 1.14438 1.55249 1.18521 1.18183 0.83080 0.79816 0.87587 1.90789 1.51622 1.60343 1.40294 1.23331 0.97526 1.00287 0.98426 1.22204 0.96676 0.93890 0.94994 1.19040 0.93341 0.97804 0.94175 1.21595 0.99814 0.98388 0.92494 1.21064 0.95754 0.97599 0.98033 1.21154 0.93479 1.00368 0.98031 1.20820 0.87971 1.01174 0.96178 1.98376 1.26047 1.81929 1.98000 1.21278 0.96373 0.97051 0.96670 0.95777 0.93992 0.92946 0.90225 0.94701 0.92525 0.77894 0.85815 0.84396 0.84676 0.84786 0.84972 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.72 16 2 C -0.12 -2.83 5.50 -26.73 -0.15 -2.98 16 3 C 0.27 6.61 2.11 -69.08 -0.15 6.46 16 4 H 0.06 1.65 7.52 -51.93 -0.39 1.26 16 5 C -0.54 -14.01 8.66 -34.44 -0.30 -14.31 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.85 5.16 -17.82 -0.09 1.75 16 8 N -0.88 -24.72 12.16 55.43 0.67 -24.05 16 9 Si 0.90 20.39 29.55 -169.99 -5.02 15.37 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.70 -14.10 5.02 -56.33 -0.28 -14.38 16 14 C 0.53 10.14 6.31 -12.96 -0.08 10.06 16 15 O -0.55 -12.54 13.36 5.19 0.07 -12.47 16 16 C -0.17 -2.47 9.41 -37.50 -0.35 -2.83 16 17 C -0.06 -0.75 9.46 -37.16 -0.35 -1.10 16 18 C -0.04 -0.48 5.87 -105.06 -0.62 -1.09 16 19 C -0.10 -0.98 9.41 -39.11 -0.37 -1.35 16 20 C -0.11 -0.85 10.03 -39.65 -0.40 -1.25 16 21 C -0.11 -0.93 9.82 -39.43 -0.39 -1.32 16 22 C -0.03 -0.34 6.31 -39.56 -0.25 -0.59 16 23 Cl -0.07 -0.66 28.95 -51.86 -1.50 -2.16 16 24 C -0.10 -0.98 9.57 -39.07 -0.37 -1.36 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.04 0.89 5.65 -51.93 -0.29 0.60 16 27 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 28 H 0.08 2.08 6.80 -51.93 -0.35 1.72 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.39 6.69 8.51 -40.82 -0.35 6.34 16 32 H 0.12 1.35 6.07 -52.49 -0.32 1.04 16 33 H 0.14 1.92 7.52 -52.49 -0.39 1.52 16 34 H 0.14 1.07 6.17 -52.48 -0.32 0.75 16 35 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 36 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 329.06 15.07 4.96 4.96 Total: -1.00 -30.00 329.06 -9.13 -39.14 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.48 Total: 6.22 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -3.55 Total: -12.62 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.39 Total: -38.43 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.47 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.00 -9.13 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492564923.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.828 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds