Wall clock time and date at job start Tue Mar 31 2020 07:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47173 * 2 1 4 4 H 1.08999 * 109.47078 * 304.89575 * 3 2 1 5 5 C 1.50699 * 109.46868 * 184.89824 * 3 2 1 6 6 H 1.08003 * 120.00264 * 245.45189 * 5 3 2 7 7 C 1.37878 * 119.99913 * 65.45544 * 5 3 2 8 8 N 1.31513 * 120.00234 * 9.46524 * 7 5 3 9 9 Si 1.86804 * 119.99810 * 189.46795 * 7 5 3 10 10 H 1.48500 * 109.47227 * 84.99576 * 9 7 5 11 11 H 1.48506 * 109.46735 * 204.99028 * 9 7 5 12 12 H 1.48496 * 109.47088 * 324.99273 * 9 7 5 13 13 N 1.46497 * 109.47018 * 64.90104 * 3 2 1 14 14 C 1.34776 * 119.99944 * 274.99505 * 13 3 2 15 15 O 1.21700 * 119.99926 * 0.02562 * 14 13 3 16 16 C 1.46430 * 120.00211 * 180.02562 * 14 13 3 17 17 C 1.34804 * 119.99997 * 180.02562 * 16 14 13 18 18 C 1.47212 * 119.99932 * 180.02562 * 17 16 14 19 19 C 1.39862 * 120.16142 * 0.25619 * 18 17 16 20 20 C 1.37875 * 119.85036 * 180.27909 * 19 18 17 21 21 C 1.38407 * 120.18658 * 359.71908 * 20 19 18 22 22 C 1.38492 * 120.33071 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 119.92561 * 179.97438 * 22 21 20 24 24 C 1.38034 * 120.14411 * 359.97438 * 22 21 20 25 25 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47216 * 300.00272 * 1 2 3 27 27 H 1.09000 * 109.47043 * 59.99938 * 1 2 3 28 28 H 1.08996 * 109.47216 * 239.99727 * 2 1 3 29 29 H 1.09000 * 109.47043 * 120.00062 * 2 1 3 30 30 H 0.96998 * 120.00272 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00384 * 94.99749 * 13 3 2 32 32 H 1.07998 * 119.99817 * 0.02562 * 16 14 13 33 33 H 1.07998 * 120.00186 * 359.97438 * 17 16 14 34 34 H 1.08003 * 120.07757 * 359.97438 * 19 18 17 35 35 H 1.08004 * 119.91089 * 179.69795 * 20 19 18 36 36 H 1.08002 * 119.83035 * 180.02562 * 21 20 19 37 37 H 1.08001 * 120.09124 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6069 1.9810 -0.8429 5 6 3.5422 1.4442 -0.1213 6 1 4.1494 1.8090 0.6939 7 6 4.1413 0.9800 -1.2731 8 7 3.4098 0.7114 -2.3326 9 14 5.9920 0.7326 -1.3288 10 1 6.3290 -0.6068 -0.7834 11 1 6.4619 0.8273 -2.7344 12 1 6.6562 1.7807 -0.5131 13 7 1.6505 2.0982 1.2508 14 6 0.4330 2.6652 1.3636 15 8 -0.3428 2.6322 0.4265 16 6 0.0437 3.3211 2.6136 17 6 -1.1742 3.8878 2.7265 18 6 -1.5653 4.5477 3.9830 19 6 -0.6740 4.5933 5.0598 20 6 -1.0491 5.2079 6.2356 21 6 -2.3021 5.7843 6.3506 22 6 -3.1888 5.7482 5.2873 23 17 -4.7581 6.4740 5.4433 24 6 -2.8274 5.1365 4.1039 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8312 0.3845 -3.1427 31 1 2.2687 2.1243 1.9978 32 1 0.7324 3.3508 3.4450 33 1 -1.8627 3.8585 1.8950 34 1 0.3042 4.1438 4.9723 35 1 -0.3633 5.2394 7.0694 36 1 -2.5898 6.2646 7.2741 37 1 -3.5197 5.1085 3.2754 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492564923.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:15 Heat of formation + Delta-G solvation = -33.240953 kcal Electronic energy + Delta-G solvation = -19917.971773 eV Core-core repulsion = 16685.105873 eV Total energy + Delta-G solvation = -3232.865899 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78446 -40.15270 -37.53770 -36.97081 -34.92878 -34.26562 -32.89249 -31.90654 -30.55327 -28.92081 -25.71558 -24.64431 -23.70875 -22.58144 -21.33808 -20.53694 -18.90283 -18.25359 -17.39395 -17.19821 -16.46023 -16.36482 -16.17873 -15.77593 -15.11828 -14.74432 -14.60439 -14.57605 -14.41334 -13.87775 -13.45127 -13.31950 -13.22680 -12.90942 -12.73876 -12.60836 -12.58678 -12.23599 -12.19056 -12.06662 -11.84606 -11.63212 -11.22099 -11.08837 -10.71868 -10.51863 -9.84513 -9.66690 -9.24814 -8.18675 -6.31731 -0.49046 0.20574 0.98851 1.11085 1.45403 1.46530 1.55947 2.37033 2.43905 2.69961 2.81059 3.13256 3.63941 3.79291 3.99005 4.16392 4.19238 4.30066 4.39611 4.46888 4.53828 4.65930 4.72865 4.87866 5.00688 5.06105 5.16948 5.22510 5.33090 5.38320 5.43174 5.54467 5.58106 5.63135 5.75820 5.78280 5.95858 6.08261 6.77487 7.02916 7.34767 7.61387 8.90179 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.032203 B = 0.002670 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.267992 B =10483.727111 C =10997.417001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C 0.274 3.726 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.698 5.698 14 C 0.523 3.477 15 O -0.595 6.595 16 C -0.191 4.191 17 C -0.033 4.033 18 C -0.066 4.066 19 C -0.102 4.102 20 C -0.103 4.103 21 C -0.104 4.104 22 C -0.048 4.048 23 Cl -0.072 7.072 24 C -0.102 4.102 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.024 0.976 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.264 0.736 31 H 0.405 0.595 32 H 0.162 0.838 33 H 0.120 0.880 34 H 0.153 0.847 35 H 0.167 0.833 36 H 0.155 0.845 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.003 8.928 20.675 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.171 3.829 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.792 3.208 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.346 5.346 14 C 0.313 3.687 15 O -0.479 6.479 16 C -0.211 4.211 17 C -0.053 4.053 18 C -0.066 4.066 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.075 4.075 23 Cl -0.043 7.043 24 C -0.121 4.121 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.241 0.759 32 H 0.180 0.820 33 H 0.138 0.862 34 H 0.170 0.830 35 H 0.185 0.815 36 H 0.172 0.828 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.636 8.889 19.829 23.771 hybrid contribution 0.768 -0.179 -0.616 1.001 sum -8.868 8.710 19.212 22.883 Atomic orbital electron populations 1.21685 0.96752 0.99312 1.00450 1.21703 0.94037 0.99023 1.00384 1.18389 0.93772 0.89093 0.81671 0.98012 1.21555 0.91327 1.43663 1.02164 0.90806 1.25790 1.03217 0.94836 0.94579 1.70138 1.37835 1.44819 1.02807 0.85430 0.79205 0.79077 0.77071 1.19539 1.21541 1.18686 1.46158 1.15421 1.55442 1.17551 1.18945 0.82025 0.78938 0.88800 1.90767 1.52746 1.61962 1.42451 1.23075 0.98955 1.01982 0.97117 1.22247 0.95668 0.91952 0.95402 1.18926 0.94320 0.99448 0.93907 1.21870 1.00067 0.97789 0.92219 1.21441 0.95945 0.96282 0.98369 1.21529 0.93242 0.99199 0.98255 1.20949 0.88458 1.01640 0.96445 1.98376 1.26083 1.81894 1.97970 1.21358 0.96369 0.97165 0.97222 0.93350 0.93460 0.95652 0.93101 0.93143 0.92657 0.75932 0.82043 0.86185 0.82957 0.81545 0.82767 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.51 71.98 0.61 -4.96 16 2 C -0.11 -5.44 5.50 30.60 0.17 -5.28 16 3 C 0.27 13.99 2.11 44.25 0.09 14.08 16 4 H 0.00 0.12 7.52 -2.39 -0.02 0.10 16 5 C -0.55 -28.78 8.66 25.60 0.22 -28.56 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.02 0.87 5.16 84.66 0.44 1.31 16 8 N -0.92 -53.34 12.16 21.45 0.26 -53.08 16 9 Si 0.97 41.79 29.55 68.60 2.03 43.81 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 13 N -0.70 -28.22 5.02 -450.33 -2.26 -30.48 16 14 C 0.52 20.42 6.31 86.38 0.54 20.96 16 15 O -0.60 -28.42 13.36 -4.35 -0.06 -28.48 16 16 C -0.19 -5.18 9.41 23.62 0.22 -4.96 16 17 C -0.03 -0.83 9.46 23.84 0.23 -0.61 16 18 C -0.07 -1.33 5.87 -20.15 -0.12 -1.45 16 19 C -0.10 -1.56 9.41 22.58 0.21 -1.35 16 20 C -0.10 -1.21 10.03 22.22 0.22 -0.99 16 21 C -0.10 -1.38 9.82 22.37 0.22 -1.16 16 22 C -0.05 -0.84 6.31 22.28 0.14 -0.70 16 23 Cl -0.07 -1.21 28.95 -2.72 -0.08 -1.29 16 24 C -0.10 -2.01 9.57 22.60 0.22 -1.79 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.05 2.04 5.65 -2.39 -0.01 2.02 16 27 H 0.02 1.23 7.84 -2.39 -0.02 1.21 16 28 H 0.05 2.74 6.80 -2.39 -0.02 2.73 16 29 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.41 13.46 8.51 -92.71 -0.79 12.67 16 32 H 0.16 3.04 6.07 -2.91 -0.02 3.03 16 33 H 0.12 3.46 7.52 -2.91 -0.02 3.44 16 34 H 0.15 1.77 6.17 -2.91 -0.02 1.75 16 35 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 36 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -67.86 329.06 3.62 -64.25 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.31 Total: 20.71 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 3.42 Total: -15.44 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -2.00 Total: -83.56 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.06 Total: -28.48 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -67.86 3.62 -64.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492564923.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.006 kcal (2) G-P(sol) polarization free energy of solvation -67.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds