Wall clock time and date at job start Tue Mar 31 2020 07:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21692 * 120.00272 * 0.02562 * 14 13 3 16 16 C 1.46437 * 120.00155 * 180.02562 * 14 13 3 17 17 C 1.34799 * 119.99986 * 180.02562 * 16 14 13 18 18 C 1.47219 * 119.99789 * 180.02562 * 17 16 14 19 19 C 1.39855 * 120.16173 * 180.02562 * 18 17 16 20 20 C 1.37870 * 119.84963 * 179.97438 * 19 18 17 21 21 C 1.38409 * 120.19047 * 359.97438 * 20 19 18 22 22 C 1.38491 * 120.32682 * 0.02562 * 21 20 19 23 23 Cl 1.73594 * 119.92714 * 180.02562 * 22 21 20 24 24 C 1.38037 * 120.14364 * 359.74906 * 22 21 20 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 32 32 H 1.08006 * 119.99264 * 0.02562 * 16 14 13 33 33 H 1.07993 * 120.00422 * 0.02562 * 17 16 14 34 34 H 1.08000 * 120.07244 * 359.97438 * 19 18 17 35 35 H 1.08008 * 119.90588 * 180.02562 * 20 19 18 36 36 H 1.07993 * 119.83681 * 180.02562 * 21 20 19 37 37 H 1.08003 * 120.09176 * 180.25366 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3419 2.6325 -0.4309 16 6 0.0476 3.3187 -2.6183 17 6 -1.1697 3.8861 -2.7332 18 6 -1.5596 4.5435 -3.9915 19 6 -2.8215 5.1337 -4.1143 20 6 -3.1797 5.7481 -5.2955 21 6 -2.2941 5.7824 -6.3586 22 6 -1.0426 5.2002 -6.2453 23 17 0.0601 5.2499 -7.5851 24 6 -0.6681 4.5856 -5.0674 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 2.2720 2.1232 -1.9977 32 1 0.7372 3.3466 -3.4491 33 1 -1.8590 3.8586 -1.9023 34 1 -3.5138 5.1084 -3.2857 35 1 -4.1539 6.2046 -5.3912 36 1 -2.5805 6.2654 -7.2810 37 1 0.3097 4.1355 -4.9786 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492564924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:19 Heat of formation + Delta-G solvation = -14.808306 kcal Electronic energy + Delta-G solvation = -20000.912509 eV Core-core repulsion = 16768.845909 eV Total energy + Delta-G solvation = -3232.066600 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.68293 -38.90867 -36.76342 -35.22772 -33.92249 -32.37217 -31.08489 -31.01259 -29.61364 -27.04082 -24.45861 -23.12151 -22.75302 -21.26725 -19.55042 -19.16878 -17.69626 -17.02044 -16.01897 -15.64496 -15.51910 -15.08641 -14.46944 -14.30189 -13.98913 -13.84195 -13.83600 -13.22163 -12.66962 -12.23984 -12.16115 -11.94267 -11.85143 -11.52114 -11.40611 -11.25048 -11.13251 -10.99243 -10.82913 -10.33634 -10.32549 -10.16708 -9.63271 -9.12558 -9.12104 -9.04193 -8.49987 -8.42283 -7.80383 -6.12553 -4.22153 0.40089 0.91251 1.83983 1.97084 3.25549 3.30923 3.32059 3.42439 4.00246 4.03799 4.34849 4.45604 4.58155 4.79887 4.91514 5.03703 5.10650 5.18800 5.32942 5.54590 5.69071 5.83216 5.93344 6.01572 6.38399 6.39904 6.44011 6.46536 6.54250 6.66624 7.04744 7.20315 7.36516 7.44343 7.61850 7.73696 7.90003 8.17781 8.66045 8.77010 9.12013 9.45193 10.92763 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.021203 B = 0.003072 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.243956 B = 9113.633344 C =10054.562345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.700 5.700 14 C 0.527 3.473 15 O -0.551 6.551 16 C -0.175 4.175 17 C -0.058 4.058 18 C -0.043 4.043 19 C -0.099 4.099 20 C -0.108 4.108 21 C -0.112 4.112 22 C -0.034 4.034 23 Cl -0.071 7.071 24 C -0.102 4.102 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.123 0.877 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.357 9.168 -16.677 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.346 5.346 14 C 0.314 3.686 15 O -0.432 6.432 16 C -0.196 4.196 17 C -0.078 4.078 18 C -0.044 4.044 19 C -0.117 4.117 20 C -0.126 4.126 21 C -0.131 4.131 22 C -0.060 4.060 23 Cl -0.042 7.042 24 C -0.120 4.120 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.117 0.883 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.141 0.859 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.742 9.016 -15.906 21.205 hybrid contribution 1.488 -0.040 -0.473 1.561 sum -9.254 8.977 -16.379 20.844 Atomic orbital electron populations 1.21843 0.98341 0.98036 1.01248 1.21932 0.92631 0.99749 1.02306 1.18803 0.94215 0.89226 0.80986 0.93206 1.21202 0.90714 1.39156 1.06351 0.92120 1.24884 0.98617 0.94776 0.95368 1.69884 1.35235 1.37527 1.09311 0.86512 0.84845 0.78323 0.77455 1.20173 1.21128 1.20155 1.46447 1.14422 1.55194 1.18562 1.18171 0.83086 0.79801 0.87563 1.90779 1.51530 1.60425 1.40427 1.23364 0.97630 1.00205 0.98426 1.22212 0.96677 0.93984 0.94939 1.19053 0.93873 0.98037 0.93399 1.21506 0.95574 0.96484 0.98116 1.21060 0.99611 0.99342 0.92601 1.21152 0.92157 0.99768 0.99981 1.20823 0.92383 1.02855 0.89955 1.98380 1.62837 1.97387 1.45614 1.21367 1.00543 0.98985 0.91146 0.94268 0.93137 0.95860 0.88265 0.95026 0.92492 0.77852 0.85902 0.84243 0.84739 0.84824 0.84978 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.09 5.45 -26.74 -0.15 -3.24 16 3 C 0.27 6.74 2.24 -69.09 -0.15 6.58 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.62 11.29 55.43 0.63 -24.00 16 9 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.70 -14.35 5.02 -56.33 -0.28 -14.63 16 14 C 0.53 10.28 6.31 -12.96 -0.08 10.20 16 15 O -0.55 -12.58 13.37 5.20 0.07 -12.51 16 16 C -0.18 -2.55 9.41 -37.50 -0.35 -2.90 16 17 C -0.06 -0.76 9.46 -37.15 -0.35 -1.11 16 18 C -0.04 -0.48 5.87 -105.06 -0.62 -1.09 16 19 C -0.10 -0.90 9.79 -39.11 -0.38 -1.28 16 20 C -0.11 -0.84 10.03 -39.65 -0.40 -1.24 16 21 C -0.11 -0.94 9.82 -39.43 -0.39 -1.33 16 22 C -0.03 -0.33 6.31 -39.56 -0.25 -0.58 16 23 Cl -0.07 -0.68 28.95 -51.86 -1.50 -2.18 16 24 C -0.10 -1.09 9.19 -39.07 -0.36 -1.45 16 25 H 0.04 0.85 5.64 -51.93 -0.29 0.55 16 26 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.39 6.90 8.52 -40.82 -0.35 6.55 16 32 H 0.12 1.45 6.07 -52.48 -0.32 1.13 16 33 H 0.14 1.90 7.52 -52.49 -0.39 1.50 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.14 1.38 6.17 -52.48 -0.32 1.06 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -29.87 327.70 -9.17 -39.05 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.44 Total: 6.70 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -3.56 Total: -12.88 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.34 Total: -38.63 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.07 Total: -12.51 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.87 -9.17 -39.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492564924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.237 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds