Wall clock time and date at job start Tue Mar 31 2020 07:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21692 * 120.00272 * 0.02562 * 14 13 3 16 16 C 1.46437 * 120.00155 * 180.02562 * 14 13 3 17 17 C 1.34799 * 119.99986 * 180.02562 * 16 14 13 18 18 C 1.47219 * 119.99789 * 180.02562 * 17 16 14 19 19 C 1.39855 * 120.16173 * 180.02562 * 18 17 16 20 20 C 1.37870 * 119.84963 * 179.97438 * 19 18 17 21 21 C 1.38409 * 120.19047 * 359.97438 * 20 19 18 22 22 C 1.38491 * 120.32682 * 0.02562 * 21 20 19 23 23 Cl 1.73594 * 119.92714 * 180.02562 * 22 21 20 24 24 C 1.38037 * 120.14364 * 359.74906 * 22 21 20 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 32 32 H 1.08006 * 119.99264 * 0.02562 * 16 14 13 33 33 H 1.07993 * 120.00422 * 0.02562 * 17 16 14 34 34 H 1.08000 * 120.07244 * 359.97438 * 19 18 17 35 35 H 1.08008 * 119.90588 * 180.02562 * 20 19 18 36 36 H 1.07993 * 119.83681 * 180.02562 * 21 20 19 37 37 H 1.08003 * 120.09176 * 180.25366 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3419 2.6325 -0.4309 16 6 0.0476 3.3187 -2.6183 17 6 -1.1697 3.8861 -2.7332 18 6 -1.5596 4.5435 -3.9915 19 6 -2.8215 5.1337 -4.1143 20 6 -3.1797 5.7481 -5.2955 21 6 -2.2941 5.7824 -6.3586 22 6 -1.0426 5.2002 -6.2453 23 17 0.0601 5.2499 -7.5851 24 6 -0.6681 4.5856 -5.0674 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 2.2720 2.1232 -1.9977 32 1 0.7372 3.3466 -3.4491 33 1 -1.8590 3.8586 -1.9023 34 1 -3.5138 5.1084 -3.2857 35 1 -4.1539 6.2046 -5.3912 36 1 -2.5805 6.2654 -7.2810 37 1 0.3097 4.1355 -4.9786 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492564924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:19 Heat of formation + Delta-G solvation = -31.453963 kcal Electronic energy + Delta-G solvation = -20001.634319 eV Core-core repulsion = 16768.845909 eV Total energy + Delta-G solvation = -3232.788410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79395 -40.15675 -37.50958 -37.00257 -34.98387 -34.28022 -32.81783 -31.78166 -30.65256 -28.92467 -25.73308 -24.68395 -23.66760 -22.53654 -21.31762 -20.55207 -18.93317 -18.28671 -17.35097 -17.21280 -16.50006 -16.35890 -16.18646 -15.78133 -14.98819 -14.81093 -14.62310 -14.59101 -14.46931 -13.85492 -13.49586 -13.21073 -13.13532 -12.91238 -12.73202 -12.65161 -12.60892 -12.24941 -12.17745 -12.05689 -11.84690 -11.59664 -11.22619 -11.06379 -10.75213 -10.51367 -9.84480 -9.66585 -9.25621 -8.15890 -6.33396 -0.49877 0.20660 0.98254 1.12188 1.44968 1.46721 1.54499 2.36232 2.42560 2.69096 2.80502 3.13464 3.62763 3.76216 4.03621 4.12301 4.21096 4.29321 4.39988 4.49687 4.57720 4.59790 4.76669 4.88853 5.01992 5.06428 5.17082 5.24582 5.30443 5.41698 5.44698 5.54092 5.57626 5.63316 5.78142 5.80611 5.94995 6.17225 6.74485 7.01112 7.33676 7.58969 8.89333 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.021203 B = 0.003072 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.243956 B = 9113.633344 C =10054.562345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.001 1.001 5 C -0.551 4.551 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.700 5.700 14 C 0.526 3.474 15 O -0.593 6.593 16 C -0.200 4.200 17 C -0.026 4.026 18 C -0.068 4.068 19 C -0.096 4.096 20 C -0.104 4.104 21 C -0.103 4.103 22 C -0.048 4.048 23 Cl -0.072 7.072 24 C -0.106 4.106 25 H 0.043 0.957 26 H 0.026 0.974 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.404 0.596 32 H 0.151 0.849 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.167 0.833 36 H 0.155 0.845 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.826 10.236 -19.161 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.017 0.983 5 C -0.589 4.589 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.189 1.189 13 N -0.348 5.348 14 C 0.315 3.685 15 O -0.477 6.477 16 C -0.220 4.220 17 C -0.046 4.046 18 C -0.068 4.068 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.075 4.075 23 Cl -0.043 7.043 24 C -0.125 4.125 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.239 0.761 32 H 0.168 0.832 33 H 0.149 0.851 34 H 0.168 0.832 35 H 0.185 0.815 36 H 0.172 0.828 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.205 10.097 -18.436 23.820 hybrid contribution 1.464 -0.256 0.212 1.501 sum -9.742 9.841 -18.224 22.888 Atomic orbital electron populations 1.21677 0.96938 0.99140 1.00293 1.21782 0.93813 0.99124 1.01277 1.18372 0.93622 0.89220 0.81390 0.98325 1.21568 0.91489 1.39070 1.06786 0.91090 1.25770 1.03333 0.94342 0.94996 1.70041 1.37141 1.38289 1.09819 0.85431 0.79094 0.78446 0.77571 1.19677 1.21145 1.18935 1.46200 1.15457 1.55514 1.17589 1.18872 0.82003 0.78875 0.88714 1.90752 1.52522 1.61978 1.42407 1.23068 0.99310 1.02639 0.97031 1.22321 0.95465 0.91395 0.95450 1.18960 0.95260 0.99963 0.92631 1.21801 0.94890 0.95406 0.99275 1.21433 1.00776 0.98424 0.91526 1.21532 0.91346 0.98302 1.00999 1.20961 0.93168 1.03552 0.89817 1.98381 1.63021 1.97418 1.45467 1.21442 1.00630 0.99007 0.91420 0.93767 0.95486 0.93569 0.90967 0.94120 0.92571 0.76148 0.83159 0.85134 0.83174 0.81549 0.82772 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.51 71.98 0.61 -5.01 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 3 C 0.28 14.38 2.24 44.24 0.10 14.48 16 4 H 0.00 -0.07 7.58 -2.39 -0.02 -0.09 16 5 C -0.55 -29.39 8.73 25.60 0.22 -29.16 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.91 -52.60 11.29 21.45 0.24 -52.36 16 9 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 N -0.70 -29.28 5.02 -450.35 -2.26 -31.54 16 14 C 0.53 20.97 6.31 86.38 0.54 21.51 16 15 O -0.59 -28.20 13.37 -4.32 -0.06 -28.26 16 16 C -0.20 -5.74 9.41 23.62 0.22 -5.52 16 17 C -0.03 -0.67 9.46 23.84 0.23 -0.44 16 18 C -0.07 -1.37 5.87 -20.15 -0.12 -1.49 16 19 C -0.10 -1.48 9.79 22.57 0.22 -1.26 16 20 C -0.10 -1.22 10.03 22.22 0.22 -0.99 16 21 C -0.10 -1.38 9.82 22.37 0.22 -1.16 16 22 C -0.05 -0.85 6.31 22.28 0.14 -0.70 16 23 Cl -0.07 -1.23 28.95 -2.72 -0.08 -1.31 16 24 C -0.11 -2.08 9.19 22.60 0.21 -1.87 16 25 H 0.04 1.94 5.64 -2.39 -0.01 1.93 16 26 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 27 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.07 4.02 5.95 -2.39 -0.01 4.00 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.40 14.29 8.52 -92.71 -0.79 13.50 16 32 H 0.15 3.39 6.07 -2.91 -0.02 3.37 16 33 H 0.13 3.53 7.52 -2.91 -0.02 3.51 16 34 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 36 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.14 2.59 6.17 -2.91 -0.02 2.57 16 Total: -1.00 -66.77 327.70 3.62 -63.16 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.31 Total: 22.24 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 3.44 Total: -16.19 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -2.02 Total: -83.90 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.06 Total: -28.26 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -66.77 3.62 -63.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492564924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.703 kcal (2) G-P(sol) polarization free energy of solvation -66.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds