Wall clock time and date at job start Tue Mar 31 2020 07:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47175 * 2 1 4 4 H 1.08995 * 109.46756 * 306.03489 * 3 2 1 5 5 C 1.50694 * 109.46847 * 186.03452 * 3 2 1 6 6 H 1.08005 * 120.00075 * 243.90840 * 5 3 2 7 7 C 1.37885 * 120.00289 * 63.91596 * 5 3 2 8 8 N 1.31509 * 120.00093 * 197.17213 * 7 5 3 9 9 Si 1.86796 * 119.99655 * 17.17203 * 7 5 3 10 10 H 1.48500 * 109.47312 * 86.28993 * 9 7 5 11 11 H 1.48504 * 109.46877 * 206.28971 * 9 7 5 12 12 H 1.48502 * 109.47263 * 326.28473 * 9 7 5 13 13 N 1.46902 * 109.46998 * 66.03696 * 3 2 1 14 14 C 1.46895 * 111.00092 * 251.13040 * 13 3 2 15 15 C 1.50699 * 109.47444 * 184.28599 * 14 13 3 16 16 N 1.30917 * 118.72418 * 269.73454 * 15 14 13 17 17 C 1.35206 * 121.08525 * 179.72135 * 16 15 14 18 18 C 1.40368 * 129.74470 * 180.22275 * 17 16 15 19 19 C 1.32361 * 115.78562 * 180.29184 * 18 17 16 20 20 S 1.75572 * 110.77686 * 0.02562 * 19 18 17 21 21 C 1.39803 * 117.76811 * 0.52961 * 17 16 15 22 22 C 1.40184 * 118.87073 * 359.74099 * 21 17 16 23 23 O 1.35529 * 120.54465 * 179.97438 * 22 21 17 24 24 N 1.32126 * 118.71872 * 89.99864 * 15 14 13 25 25 H 1.09006 * 109.46968 * 55.84060 * 1 2 3 26 26 H 1.09000 * 109.47277 * 295.84704 * 1 2 3 27 27 H 1.08997 * 109.47540 * 175.84296 * 1 2 3 28 28 H 1.08999 * 109.47444 * 120.00140 * 2 1 3 29 29 H 1.09007 * 109.47018 * 240.00227 * 2 1 3 30 30 H 0.96999 * 119.99796 * 179.97438 * 8 7 5 31 31 H 1.00898 * 111.00095 * 127.16979 * 13 3 2 32 32 H 1.09003 * 109.46790 * 304.28882 * 14 13 3 33 33 H 1.09007 * 109.47391 * 64.28304 * 14 13 3 34 34 H 1.08002 * 122.10735 * 0.31104 * 18 17 16 35 35 H 1.08000 * 124.61304 * 180.02562 * 19 18 17 36 36 H 0.96697 * 114.00373 * 270.02577 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5912 1.9866 -0.8310 5 6 3.5395 1.4451 -0.1494 6 1 4.1609 1.8277 0.6469 7 6 4.1184 0.9591 -1.3026 8 7 5.3951 0.6440 -1.3152 9 14 3.0891 0.7485 -2.8471 10 1 3.0615 2.0272 -3.6018 11 1 3.6830 -0.3150 -3.6965 12 1 1.7044 0.3658 -2.4708 13 7 1.6729 2.0917 1.2656 14 6 0.6193 3.0939 1.0571 15 6 0.3438 3.8105 2.3538 16 7 -0.5720 3.3295 3.1562 17 6 -0.8540 3.9309 4.3339 18 6 -1.7841 3.5753 5.3231 19 6 -1.8364 4.3734 6.3778 20 16 -0.6848 5.6893 6.2208 21 6 -0.1428 5.0895 4.6603 22 6 0.8235 5.5658 3.7633 23 8 1.5323 6.6860 4.0453 24 7 1.0322 4.9028 2.6342 25 1 -0.3633 0.5771 -0.8504 26 1 -0.3634 0.4480 0.9248 27 1 -0.3634 -1.0249 -0.0745 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 5.8022 0.3017 -2.1264 31 1 2.4807 2.5031 1.7087 32 1 0.9460 3.8136 0.3064 33 1 -0.2899 2.5994 0.7149 34 1 -2.4170 2.7052 5.2298 35 1 -2.4975 4.2341 7.2204 36 1 1.1228 7.5015 3.7255 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516979639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:43 Heat of formation + Delta-G solvation = 38.517933 kcal Electronic energy + Delta-G solvation = -20672.264989 eV Core-core repulsion = 17476.847246 eV Total energy + Delta-G solvation = -3195.417743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.33890 -38.08761 -37.11700 -35.98008 -32.76077 -32.41838 -31.62322 -30.17532 -27.82591 -25.59371 -24.69068 -23.11460 -22.32211 -20.90615 -19.64945 -19.12866 -18.71995 -17.36069 -17.04920 -16.11250 -15.42083 -15.21953 -14.67034 -14.55661 -14.12892 -13.79615 -13.69329 -13.28033 -12.87944 -12.59691 -12.24013 -12.23029 -12.11770 -11.63976 -11.53374 -11.37799 -10.85690 -10.77828 -10.70207 -10.59596 -10.27987 -9.78788 -9.53420 -9.45054 -9.35748 -9.16428 -8.40339 -8.26519 -7.50324 -6.12917 -4.07759 0.12106 0.59520 1.04450 1.50838 1.90780 3.07911 3.29451 3.38504 3.41582 3.53368 3.70937 4.14663 4.41646 4.49735 4.75610 4.88965 5.16003 5.29066 5.35639 5.51827 5.61788 5.89178 5.97969 6.14159 6.16805 6.20990 6.35060 6.67695 6.74332 6.84505 7.07239 7.07988 7.10721 7.46641 7.63114 7.92871 8.03353 8.28789 8.56971 8.95774 9.52901 10.99945 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026465 B = 0.003779 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.749381 B = 7407.061432 C = 8054.720419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C 0.194 3.806 4 H 0.011 0.989 5 C -0.539 4.539 6 H 0.075 0.925 7 C 0.080 3.920 8 N -0.887 5.887 9 Si 0.862 3.138 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.249 1.249 13 N -0.670 5.670 14 C 0.125 3.875 15 C 0.365 3.635 16 N -0.477 5.477 17 C 0.183 3.817 18 C -0.121 4.121 19 C -0.161 4.161 20 S 0.145 5.855 21 C -0.290 4.290 22 C 0.417 3.583 23 O -0.469 6.469 24 N -0.516 5.516 25 H 0.036 0.964 26 H 0.058 0.942 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.264 0.736 31 H 0.343 0.657 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.181 0.819 36 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.642 10.944 13.674 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C 0.086 3.914 4 H 0.028 0.972 5 C -0.577 4.577 6 H 0.093 0.907 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.689 3.311 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.173 1.173 13 N -0.302 5.302 14 C -0.006 4.006 15 C 0.093 3.907 16 N -0.193 5.193 17 C 0.041 3.959 18 C -0.151 4.151 19 C -0.299 4.299 20 S 0.406 5.594 21 C -0.412 4.412 22 C 0.217 3.783 23 O -0.277 6.277 24 N -0.241 5.241 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.162 0.838 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.177 0.823 35 H 0.198 0.802 36 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -16.026 10.728 14.094 23.886 hybrid contribution -0.513 0.199 -1.555 1.649 sum -16.540 10.927 12.539 23.456 Atomic orbital electron populations 1.21843 0.98410 0.99464 1.00872 1.21852 0.92891 0.98995 1.00895 1.19484 0.95488 0.90938 0.85517 0.97155 1.21285 0.89467 1.43236 1.03729 0.90681 1.24887 0.94773 0.93827 0.98833 1.70000 1.12228 1.41958 1.28200 0.87230 0.82305 0.78004 0.83589 1.20578 1.21408 1.17335 1.60722 1.12978 1.29443 1.27101 1.20885 0.98824 0.93388 0.87538 1.23118 0.85502 0.86503 0.95534 1.68396 1.18266 1.30242 1.02377 1.19285 0.93973 0.89641 0.93028 1.19636 1.00306 1.02811 0.92390 1.25590 1.03145 0.98597 1.02548 1.84197 1.34621 1.27755 1.12844 1.24532 1.06293 1.06225 1.04104 1.18607 0.84656 0.88235 0.86820 1.84745 1.49246 1.14815 1.78868 1.68108 1.26660 1.10777 1.18603 0.94461 0.92283 0.94709 0.92325 0.92986 0.92607 0.83850 0.92499 0.88707 0.82308 0.80185 0.73246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.13 37.16 0.34 -2.44 16 2 C -0.11 -2.40 4.91 -26.73 -0.13 -2.54 16 3 C 0.19 4.57 1.73 -68.86 -0.12 4.45 16 4 H 0.01 0.25 6.25 -51.93 -0.32 -0.07 16 5 C -0.54 -15.04 9.02 -34.44 -0.31 -15.35 16 6 H 0.08 2.28 7.61 -52.48 -0.40 1.88 16 7 C 0.08 2.30 5.30 -17.82 -0.09 2.20 16 8 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 9 Si 0.86 21.03 25.83 -169.99 -4.39 16.64 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.25 -5.71 5.57 56.52 0.31 -5.39 16 13 N -0.67 -14.17 6.04 -109.22 -0.66 -14.83 16 14 C 0.12 2.27 5.60 -4.98 -0.03 2.24 16 15 C 0.36 6.34 7.09 -157.66 -1.12 5.22 16 16 N -0.48 -7.90 10.39 -9.09 -0.09 -7.99 16 17 C 0.18 2.56 7.02 -84.99 -0.60 1.96 16 18 C -0.12 -1.23 10.16 -40.71 -0.41 -1.65 16 19 C -0.16 -1.22 11.09 28.81 0.32 -0.90 16 20 S 0.15 1.29 23.29 -107.50 -2.50 -1.21 16 21 C -0.29 -3.77 6.50 -38.27 -0.25 -4.01 16 22 C 0.42 5.95 7.86 -16.50 -0.13 5.82 16 23 O -0.47 -5.39 13.58 -18.28 -0.25 -5.64 16 24 N -0.52 -8.74 10.35 -10.74 -0.11 -8.85 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.08 7.10 -51.93 -0.37 0.71 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.05 1.21 4.95 -51.93 -0.26 0.95 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.34 7.71 7.76 -39.29 -0.31 7.40 16 32 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 33 H 0.09 1.63 6.90 -51.93 -0.36 1.27 16 34 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.41 2.39 9.06 45.56 0.41 2.80 16 LS Contribution 315.17 15.07 4.75 4.75 Total: -1.00 -33.04 315.17 -8.37 -41.41 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -3.35 Total: 6.89 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -2.53 Total: -4.99 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.09 Total: -57.85 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.25 Total: -5.64 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.39 Total: 16.64 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.50 Total: -1.21 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.04 -8.37 -41.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516979639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.929 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds