Wall clock time and date at job start Tue Mar 31 2020 07:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47175 * 2 1 4 4 H 1.08995 * 109.46756 * 306.03489 * 3 2 1 5 5 C 1.50694 * 109.46847 * 186.03452 * 3 2 1 6 6 H 1.08005 * 120.00075 * 243.90840 * 5 3 2 7 7 C 1.37885 * 120.00289 * 63.91596 * 5 3 2 8 8 N 1.31509 * 120.00093 * 197.17213 * 7 5 3 9 9 Si 1.86796 * 119.99655 * 17.17203 * 7 5 3 10 10 H 1.48500 * 109.47312 * 86.28993 * 9 7 5 11 11 H 1.48504 * 109.46877 * 206.28971 * 9 7 5 12 12 H 1.48502 * 109.47263 * 326.28473 * 9 7 5 13 13 N 1.46902 * 109.46998 * 66.03696 * 3 2 1 14 14 C 1.46895 * 111.00092 * 251.13040 * 13 3 2 15 15 C 1.50699 * 109.47444 * 184.28599 * 14 13 3 16 16 N 1.30917 * 118.72418 * 269.73454 * 15 14 13 17 17 C 1.35206 * 121.08525 * 179.72135 * 16 15 14 18 18 C 1.40368 * 129.74470 * 180.22275 * 17 16 15 19 19 C 1.32361 * 115.78562 * 180.29184 * 18 17 16 20 20 S 1.75572 * 110.77686 * 0.02562 * 19 18 17 21 21 C 1.39803 * 117.76811 * 0.52961 * 17 16 15 22 22 C 1.40184 * 118.87073 * 359.74099 * 21 17 16 23 23 O 1.35529 * 120.54465 * 179.97438 * 22 21 17 24 24 N 1.32126 * 118.71872 * 89.99864 * 15 14 13 25 25 H 1.09006 * 109.46968 * 55.84060 * 1 2 3 26 26 H 1.09000 * 109.47277 * 295.84704 * 1 2 3 27 27 H 1.08997 * 109.47540 * 175.84296 * 1 2 3 28 28 H 1.08999 * 109.47444 * 120.00140 * 2 1 3 29 29 H 1.09007 * 109.47018 * 240.00227 * 2 1 3 30 30 H 0.96999 * 119.99796 * 179.97438 * 8 7 5 31 31 H 1.00898 * 111.00095 * 127.16979 * 13 3 2 32 32 H 1.09003 * 109.46790 * 304.28882 * 14 13 3 33 33 H 1.09007 * 109.47391 * 64.28304 * 14 13 3 34 34 H 1.08002 * 122.10735 * 0.31104 * 18 17 16 35 35 H 1.08000 * 124.61304 * 180.02562 * 19 18 17 36 36 H 0.96697 * 114.00373 * 270.02577 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5912 1.9866 -0.8310 5 6 3.5395 1.4451 -0.1494 6 1 4.1609 1.8277 0.6469 7 6 4.1184 0.9591 -1.3026 8 7 5.3951 0.6440 -1.3152 9 14 3.0891 0.7485 -2.8471 10 1 3.0615 2.0272 -3.6018 11 1 3.6830 -0.3150 -3.6965 12 1 1.7044 0.3658 -2.4708 13 7 1.6729 2.0917 1.2656 14 6 0.6193 3.0939 1.0571 15 6 0.3438 3.8105 2.3538 16 7 -0.5720 3.3295 3.1562 17 6 -0.8540 3.9309 4.3339 18 6 -1.7841 3.5753 5.3231 19 6 -1.8364 4.3734 6.3778 20 16 -0.6848 5.6893 6.2208 21 6 -0.1428 5.0895 4.6603 22 6 0.8235 5.5658 3.7633 23 8 1.5323 6.6860 4.0453 24 7 1.0322 4.9028 2.6342 25 1 -0.3633 0.5771 -0.8504 26 1 -0.3634 0.4480 0.9248 27 1 -0.3634 -1.0249 -0.0745 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 5.8022 0.3017 -2.1264 31 1 2.4807 2.5031 1.7087 32 1 0.9460 3.8136 0.3064 33 1 -0.2899 2.5994 0.7149 34 1 -2.4170 2.7052 5.2298 35 1 -2.4975 4.2341 7.2204 36 1 1.1228 7.5015 3.7255 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516979639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:43 Heat of formation + Delta-G solvation = 10.254328 kcal Electronic energy + Delta-G solvation = -20673.490591 eV Core-core repulsion = 17476.847246 eV Total energy + Delta-G solvation = -3196.643345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.38153 -39.05110 -38.49977 -37.27069 -34.56376 -33.66874 -33.23771 -31.32753 -29.50315 -27.08970 -25.68207 -24.48693 -23.89723 -21.91405 -21.45111 -20.05567 -19.76460 -19.05847 -18.25871 -17.24475 -17.15709 -16.27590 -15.91716 -15.66200 -15.48507 -15.30902 -14.97142 -14.75640 -14.30614 -14.10071 -13.75733 -13.44814 -13.25729 -13.15139 -12.98905 -12.69305 -12.56638 -12.33707 -12.08644 -11.76628 -11.69767 -11.56694 -11.25397 -11.11144 -10.58828 -10.56933 -10.36798 -9.23670 -9.05107 -8.33791 -6.33596 -0.77993 -0.47906 0.23381 0.75241 1.06311 1.36419 1.38923 1.49752 2.11398 2.35340 2.40544 2.67853 3.00439 3.16447 3.51188 3.64718 3.86074 4.06847 4.43575 4.45911 4.52741 4.59235 4.64566 4.68623 4.80054 4.90753 4.96040 5.11588 5.24300 5.31713 5.44428 5.54067 5.70008 5.79607 5.97242 6.32330 6.35230 6.55880 6.76601 6.91891 7.31089 8.82905 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026465 B = 0.003779 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.749381 B = 7407.061432 C = 8054.720419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.200 3.800 4 H 0.016 0.984 5 C -0.547 4.547 6 H 0.031 0.969 7 C 0.024 3.976 8 N -0.938 5.938 9 Si 0.928 3.072 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.222 1.222 13 N -0.669 5.669 14 C 0.130 3.870 15 C 0.348 3.652 16 N -0.497 5.497 17 C 0.164 3.836 18 C -0.148 4.148 19 C -0.127 4.127 20 S 0.199 5.801 21 C -0.311 4.311 22 C 0.414 3.586 23 O -0.473 6.473 24 N -0.552 5.552 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.267 0.733 31 H 0.330 0.670 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.174 0.826 35 H 0.228 0.772 36 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.990 11.561 15.051 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C 0.091 3.909 4 H 0.034 0.966 5 C -0.585 4.585 6 H 0.049 0.951 7 C -0.175 4.175 8 N -0.576 5.576 9 Si 0.751 3.249 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.144 1.144 13 N -0.300 5.300 14 C 0.000 4.000 15 C 0.076 3.924 16 N -0.214 5.214 17 C 0.021 3.979 18 C -0.178 4.178 19 C -0.265 4.265 20 S 0.460 5.540 21 C -0.432 4.432 22 C 0.215 3.785 23 O -0.284 6.284 24 N -0.279 5.279 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.147 0.853 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.191 0.809 35 H 0.244 0.756 36 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -19.415 11.387 15.506 27.333 hybrid contribution 0.540 0.170 -1.685 1.777 sum -18.875 11.557 13.822 26.094 Atomic orbital electron populations 1.21728 0.95104 1.01208 1.01514 1.21764 0.95779 0.97351 0.99711 1.19370 0.92448 0.92334 0.86748 0.96609 1.21575 0.91780 1.42505 1.02630 0.95123 1.25786 0.95952 0.93468 1.02294 1.70137 1.14472 1.43749 1.29282 0.86168 0.81823 0.78124 0.78777 1.20007 1.21194 1.14411 1.60689 1.12895 1.30699 1.25696 1.20798 0.97879 0.92713 0.88645 1.22707 0.86795 0.87250 0.95641 1.68287 1.18399 1.31071 1.03634 1.19878 0.95026 0.90055 0.92917 1.19800 1.00887 1.04580 0.92490 1.26194 1.01646 0.96292 1.02390 1.84093 1.33584 1.27156 1.09152 1.24797 1.05882 1.06368 1.06109 1.18763 0.84731 0.88583 0.86469 1.84698 1.49542 1.15286 1.78866 1.68002 1.27894 1.11453 1.20544 0.93325 0.92087 0.92476 0.93895 0.93885 0.92436 0.85307 0.93064 0.87593 0.80875 0.75589 0.70618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 9.13 71.98 0.66 -4.19 16 2 C -0.11 -4.73 4.91 30.60 0.15 -4.58 16 3 C 0.20 9.53 1.73 44.17 0.08 9.60 16 4 H 0.02 0.75 6.25 -2.39 -0.01 0.74 16 5 C -0.55 -31.81 9.02 25.60 0.23 -31.57 16 6 H 0.03 2.00 7.61 -2.91 -0.02 1.98 16 7 C 0.02 1.42 5.30 84.66 0.45 1.86 16 8 N -0.94 -59.12 13.96 21.45 0.30 -58.82 16 9 Si 0.93 43.55 25.83 68.60 1.77 45.32 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.22 -9.34 5.57 99.48 0.55 -8.79 16 13 N -0.67 -29.19 6.04 -499.46 -3.02 -32.21 16 14 C 0.13 4.84 5.60 85.56 0.48 5.32 16 15 C 0.35 12.43 7.09 138.91 0.99 13.41 16 16 N -0.50 -16.55 10.39 -182.66 -1.90 -18.45 16 17 C 0.16 4.41 7.02 39.52 0.28 4.69 16 18 C -0.15 -2.62 10.16 21.70 0.22 -2.40 16 19 C -0.13 -1.37 11.09 66.73 0.74 -0.63 16 20 S 0.20 2.86 23.29 -56.49 -1.32 1.54 16 21 C -0.31 -7.68 6.50 23.12 0.15 -7.53 16 22 C 0.41 11.81 7.86 85.05 0.67 12.47 16 23 O -0.47 -10.58 13.58 -88.33 -1.20 -11.78 16 24 N -0.55 -19.31 10.35 -300.65 -3.11 -22.42 16 25 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.06 2.11 7.10 -2.39 -0.02 2.10 16 27 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.95 4.95 -2.38 -0.01 1.93 16 30 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 31 H 0.33 15.79 7.76 -89.70 -0.70 15.09 16 32 H 0.05 1.93 8.05 -2.39 -0.02 1.91 16 33 H 0.11 3.61 6.90 -2.38 -0.02 3.60 16 34 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.23 0.31 8.06 -2.91 -0.02 0.28 16 36 H 0.43 4.61 9.06 -74.06 -0.67 3.94 16 Total: -1.00 -75.61 315.17 -3.76 -79.37 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -0.38 Total: 20.98 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 5.08 Total: -3.53 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -7.73 Total: -131.91 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -1.20 Total: -11.78 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.77 Total: 45.32 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.32 Total: 1.54 kcal Total: -75.61 -3.76 -79.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516979639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.628 kcal (2) G-P(sol) polarization free energy of solvation -75.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds