Wall clock time and date at job start Tue Mar 31 2020 07:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46881 * 2 1 4 4 H 1.09004 * 109.46988 * 179.62365 * 3 2 1 5 5 C 1.50697 * 109.47341 * 299.61992 * 3 2 1 6 6 H 1.07997 * 120.00197 * 120.00537 * 5 3 2 7 7 C 1.37875 * 119.99977 * 300.00196 * 5 3 2 8 8 N 1.31514 * 120.00122 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00250 * 179.97438 * 7 5 3 10 10 H 1.48511 * 109.46846 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47286 * 119.99538 * 9 7 5 12 12 H 1.48498 * 109.47786 * 240.00333 * 9 7 5 13 13 N 1.46896 * 109.47417 * 59.62304 * 3 2 1 14 14 C 1.46897 * 111.00215 * 86.27503 * 13 3 2 15 15 C 1.50704 * 109.47247 * 184.98321 * 14 13 3 16 16 N 1.30918 * 118.72469 * 269.73365 * 15 14 13 17 17 C 1.35196 * 121.08658 * 179.72100 * 16 15 14 18 18 C 1.40379 * 129.74444 * 180.22029 * 17 16 15 19 19 C 1.32359 * 115.78252 * 180.29593 * 18 17 16 20 20 S 1.75570 * 110.77974 * 0.02562 * 19 18 17 21 21 C 1.39802 * 117.77248 * 0.53548 * 17 16 15 22 22 C 1.40194 * 118.86610 * 359.73606 * 21 17 16 23 23 O 1.35529 * 120.54102 * 179.97438 * 22 21 17 24 24 N 1.32123 * 118.72125 * 90.00538 * 15 14 13 25 25 H 1.09003 * 109.47163 * 55.92047 * 1 2 3 26 26 H 1.09000 * 109.47287 * 175.92340 * 1 2 3 27 27 H 1.08999 * 109.47255 * 295.91901 * 1 2 3 28 28 H 1.08998 * 109.46693 * 240.00130 * 2 1 3 29 29 H 1.08995 * 109.46861 * 119.99895 * 2 1 3 30 30 H 0.97000 * 120.00085 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00014 * 210.23488 * 13 3 2 32 32 H 1.08998 * 109.47478 * 304.98680 * 14 13 3 33 33 H 1.09001 * 109.46914 * 64.98303 * 14 13 3 34 34 H 1.08002 * 122.10880 * 0.32488 * 18 17 16 35 35 H 1.08002 * 124.60998 * 180.02562 * 19 18 17 36 36 H 0.96697 * 114.00516 * 270.02776 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0068 5 6 1.5454 2.1502 -1.2351 6 1 0.9239 3.0285 -1.1419 7 6 1.8863 1.6764 -2.4842 8 7 2.6435 0.6072 -2.5978 9 14 1.2726 2.5532 -4.0153 10 1 0.4451 3.7209 -3.6188 11 1 2.4323 3.0185 -4.8176 12 1 0.4528 1.6177 -4.8265 13 7 1.5429 2.1376 1.1948 14 6 2.4357 1.9191 2.3407 15 6 1.8329 2.5424 3.5733 16 7 2.1265 3.7863 3.8571 17 6 1.6083 4.3945 4.9476 18 6 1.7931 5.7043 5.4176 19 6 1.1490 6.0122 6.5322 20 16 0.2207 4.6405 7.1145 21 6 0.7578 3.6472 5.7678 22 6 0.4802 2.3173 5.4219 23 8 -0.3392 1.5617 6.1929 24 7 1.0330 1.8107 4.3284 25 1 -0.3633 0.5759 -0.8512 26 1 -0.3634 -1.0251 -0.0731 27 1 -0.3634 0.4492 0.9243 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.8830 0.2736 -3.4766 31 1 1.4198 3.1228 1.0150 32 1 2.5656 0.8489 2.5012 33 1 3.4044 2.3764 2.1389 34 1 2.4208 6.4160 4.9020 35 1 1.1891 6.9762 7.0176 36 1 0.1176 1.0742 6.8920 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516979641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:47 Heat of formation + Delta-G solvation = 34.481015 kcal Electronic energy + Delta-G solvation = -20647.676337 eV Core-core repulsion = 17452.083540 eV Total energy + Delta-G solvation = -3195.592797 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.28296 -38.04670 -36.98109 -35.84134 -32.86949 -32.38028 -31.00580 -29.94648 -27.18173 -25.31934 -24.64922 -23.20628 -22.84248 -20.90255 -19.12382 -18.98048 -18.65808 -17.33953 -16.57261 -16.02893 -15.27732 -14.90641 -14.65877 -14.50502 -14.12495 -13.82839 -13.48190 -13.38375 -12.72953 -12.29398 -12.18840 -12.07273 -11.80915 -11.53479 -11.35485 -10.93346 -10.79972 -10.68270 -10.54454 -10.34995 -10.05146 -9.71987 -9.46087 -9.39134 -9.32649 -8.75744 -8.46075 -8.23157 -7.29187 -6.00503 -4.05661 0.16575 0.64325 1.07892 1.53826 1.95317 3.13536 3.30513 3.38679 3.42745 3.59294 3.74758 4.20567 4.42858 4.54666 4.79178 4.95477 5.30350 5.33221 5.51971 5.54547 5.67977 5.96642 6.05221 6.29747 6.59711 6.74880 6.80790 6.91805 7.11659 7.28343 7.32442 7.51534 7.78157 7.80306 7.85908 8.09226 8.26449 8.36265 8.62939 9.02011 9.58839 11.05488 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025094 B = 0.003626 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.556516 B = 7719.599740 C = 8328.971639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.218 3.782 4 H 0.005 0.995 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.676 5.676 14 C 0.125 3.875 15 C 0.372 3.628 16 N -0.493 5.493 17 C 0.184 3.816 18 C -0.121 4.121 19 C -0.161 4.161 20 S 0.143 5.857 21 C -0.291 4.291 22 C 0.415 3.585 23 O -0.470 6.470 24 N -0.502 5.502 25 H 0.054 0.946 26 H 0.013 0.987 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.012 0.988 30 H 0.260 0.740 31 H 0.335 0.665 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.159 0.841 35 H 0.180 0.820 36 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 7.356 20.902 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.111 3.889 4 H 0.023 0.977 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.308 5.308 14 C -0.006 4.006 15 C 0.101 3.899 16 N -0.210 5.210 17 C 0.041 3.959 18 C -0.152 4.152 19 C -0.299 4.299 20 S 0.403 5.597 21 C -0.412 4.412 22 C 0.215 3.785 23 O -0.277 6.277 24 N -0.227 5.227 25 H 0.073 0.927 26 H 0.032 0.968 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.152 0.848 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.176 0.824 35 H 0.198 0.802 36 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.835 6.350 21.021 22.142 hybrid contribution 1.152 1.350 -1.230 2.160 sum -1.683 7.701 19.791 21.303 Atomic orbital electron populations 1.21442 0.97492 0.97423 1.01339 1.21440 0.95114 0.97992 0.99575 1.19177 0.93174 0.91529 0.84999 0.97736 1.21190 1.31634 1.11976 0.90200 0.92232 1.24863 0.95015 0.94999 0.98881 1.69891 1.36582 1.22678 1.23522 0.86511 0.78550 0.79691 0.83083 1.19795 1.21129 1.21001 1.60688 1.47962 1.16586 1.05569 1.20729 0.93887 1.00138 0.85859 1.23203 0.87777 0.84862 0.94067 1.68398 1.25509 1.11217 1.15876 1.19233 0.92268 0.93906 0.90454 1.19641 1.03529 0.94730 0.97338 1.25575 1.00934 1.03470 0.99928 1.84169 1.49702 1.01879 1.23922 1.24525 1.09605 1.01431 1.05662 1.18669 0.86190 0.85293 0.88395 1.84742 1.32667 1.63483 1.46824 1.68106 1.09820 1.39883 1.04915 0.92664 0.96756 0.93866 0.89406 0.96935 0.92988 0.84776 0.88750 0.92864 0.82373 0.80230 0.73325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 9.52 37.16 0.35 -2.44 16 2 C -0.10 -2.52 5.59 -26.73 -0.15 -2.67 16 3 C 0.22 5.44 2.30 -68.87 -0.16 5.28 16 4 H 0.01 0.13 7.84 -51.93 -0.41 -0.27 16 5 C -0.51 -13.79 7.28 -34.44 -0.25 -14.04 16 6 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 7 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 8 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.68 -14.76 5.56 -109.22 -0.61 -15.37 16 14 C 0.13 2.38 5.86 -4.98 -0.03 2.35 16 15 C 0.37 6.66 7.18 -157.66 -1.13 5.53 16 16 N -0.49 -8.39 10.39 -9.08 -0.09 -8.48 16 17 C 0.18 2.64 7.02 -84.99 -0.60 2.04 16 18 C -0.12 -1.29 10.16 -40.70 -0.41 -1.70 16 19 C -0.16 -1.28 11.09 28.81 0.32 -0.96 16 20 S 0.14 1.31 23.29 -107.50 -2.50 -1.19 16 21 C -0.29 -3.87 6.50 -38.26 -0.25 -4.12 16 22 C 0.41 6.06 7.86 -16.49 -0.13 5.93 16 23 O -0.47 -5.48 13.58 -18.28 -0.25 -5.73 16 24 N -0.50 -8.75 10.35 -10.73 -0.11 -8.86 16 25 H 0.05 1.37 7.09 -51.93 -0.37 1.00 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.04 0.99 7.72 -51.93 -0.40 0.59 16 28 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 29 H 0.01 0.28 7.48 -51.93 -0.39 -0.11 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.33 7.40 8.24 -39.29 -0.32 7.07 16 32 H 0.09 1.79 7.43 -51.93 -0.39 1.40 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.41 2.43 9.06 45.56 0.41 2.85 16 LS Contribution 320.23 15.07 4.83 4.83 Total: -1.00 -31.56 320.23 -9.06 -40.62 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -3.40 Total: 5.46 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -2.53 Total: -3.13 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.19 Total: -57.11 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.25 Total: -5.73 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.50 Total: -1.19 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.56 -9.06 -40.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516979641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.102 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds