Wall clock time and date at job start Tue Mar 31 2020 07:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46881 * 2 1 4 4 H 1.09004 * 109.46988 * 179.62365 * 3 2 1 5 5 C 1.50697 * 109.47341 * 299.61992 * 3 2 1 6 6 H 1.07997 * 120.00197 * 120.00537 * 5 3 2 7 7 C 1.37875 * 119.99977 * 300.00196 * 5 3 2 8 8 N 1.31514 * 120.00122 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00250 * 179.97438 * 7 5 3 10 10 H 1.48511 * 109.46846 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47286 * 119.99538 * 9 7 5 12 12 H 1.48498 * 109.47786 * 240.00333 * 9 7 5 13 13 N 1.46896 * 109.47417 * 59.62304 * 3 2 1 14 14 C 1.46897 * 111.00215 * 86.27503 * 13 3 2 15 15 C 1.50704 * 109.47247 * 184.98321 * 14 13 3 16 16 N 1.30918 * 118.72469 * 269.73365 * 15 14 13 17 17 C 1.35196 * 121.08658 * 179.72100 * 16 15 14 18 18 C 1.40379 * 129.74444 * 180.22029 * 17 16 15 19 19 C 1.32359 * 115.78252 * 180.29593 * 18 17 16 20 20 S 1.75570 * 110.77974 * 0.02562 * 19 18 17 21 21 C 1.39802 * 117.77248 * 0.53548 * 17 16 15 22 22 C 1.40194 * 118.86610 * 359.73606 * 21 17 16 23 23 O 1.35529 * 120.54102 * 179.97438 * 22 21 17 24 24 N 1.32123 * 118.72125 * 90.00538 * 15 14 13 25 25 H 1.09003 * 109.47163 * 55.92047 * 1 2 3 26 26 H 1.09000 * 109.47287 * 175.92340 * 1 2 3 27 27 H 1.08999 * 109.47255 * 295.91901 * 1 2 3 28 28 H 1.08998 * 109.46693 * 240.00130 * 2 1 3 29 29 H 1.08995 * 109.46861 * 119.99895 * 2 1 3 30 30 H 0.97000 * 120.00085 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00014 * 210.23488 * 13 3 2 32 32 H 1.08998 * 109.47478 * 304.98680 * 14 13 3 33 33 H 1.09001 * 109.46914 * 64.98303 * 14 13 3 34 34 H 1.08002 * 122.10880 * 0.32488 * 18 17 16 35 35 H 1.08002 * 124.60998 * 180.02562 * 19 18 17 36 36 H 0.96697 * 114.00516 * 270.02776 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0068 5 6 1.5454 2.1502 -1.2351 6 1 0.9239 3.0285 -1.1419 7 6 1.8863 1.6764 -2.4842 8 7 2.6435 0.6072 -2.5978 9 14 1.2726 2.5532 -4.0153 10 1 0.4451 3.7209 -3.6188 11 1 2.4323 3.0185 -4.8176 12 1 0.4528 1.6177 -4.8265 13 7 1.5429 2.1376 1.1948 14 6 2.4357 1.9191 2.3407 15 6 1.8329 2.5424 3.5733 16 7 2.1265 3.7863 3.8571 17 6 1.6083 4.3945 4.9476 18 6 1.7931 5.7043 5.4176 19 6 1.1490 6.0122 6.5322 20 16 0.2207 4.6405 7.1145 21 6 0.7578 3.6472 5.7678 22 6 0.4802 2.3173 5.4219 23 8 -0.3392 1.5617 6.1929 24 7 1.0330 1.8107 4.3284 25 1 -0.3633 0.5759 -0.8512 26 1 -0.3634 -1.0251 -0.0731 27 1 -0.3634 0.4492 0.9243 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.8830 0.2736 -3.4766 31 1 1.4198 3.1228 1.0150 32 1 2.5656 0.8489 2.5012 33 1 3.4044 2.3764 2.1389 34 1 2.4208 6.4160 4.9020 35 1 1.1891 6.9762 7.0176 36 1 0.1176 1.0742 6.8920 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516979641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:46 Heat of formation + Delta-G solvation = 9.386854 kcal Electronic energy + Delta-G solvation = -20648.764501 eV Core-core repulsion = 17452.083540 eV Total energy + Delta-G solvation = -3196.680962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.36204 -39.02128 -38.39565 -37.25265 -34.60970 -33.59811 -32.73516 -31.24369 -28.89157 -26.93268 -25.69315 -25.08118 -24.11521 -21.95148 -20.95278 -20.02048 -19.73445 -18.51350 -18.21796 -17.16285 -16.95863 -16.19678 -15.99733 -15.71787 -15.56902 -15.16762 -14.97371 -14.62566 -14.22504 -13.97329 -13.72115 -13.37409 -13.11464 -12.98086 -12.82584 -12.61379 -12.41910 -12.32159 -11.98132 -11.76850 -11.75405 -11.52392 -11.31184 -10.80393 -10.57007 -10.53898 -10.34798 -9.14334 -9.02745 -8.09338 -6.21245 -0.76360 -0.46518 0.24355 0.75030 1.07263 1.41586 1.44119 1.54931 2.14091 2.38294 2.47828 2.67983 3.18477 3.19574 3.53812 3.73971 3.90612 4.08415 4.46708 4.49381 4.62188 4.66937 4.79109 4.80261 4.93901 4.95448 5.12651 5.29905 5.38723 5.53893 5.71468 5.72321 5.80077 5.86644 6.26617 6.35424 6.40846 6.69470 6.93034 6.97645 7.46753 8.96142 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025094 B = 0.003626 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.556516 B = 7719.599740 C = 8328.971639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.225 3.775 4 H -0.024 1.024 5 C -0.524 4.524 6 H 0.054 0.946 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.955 3.045 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.281 1.281 13 N -0.673 5.673 14 C 0.133 3.867 15 C 0.357 3.643 16 N -0.517 5.517 17 C 0.163 3.837 18 C -0.151 4.151 19 C -0.127 4.127 20 S 0.202 5.798 21 C -0.311 4.311 22 C 0.414 3.586 23 O -0.471 6.471 24 N -0.537 5.537 25 H 0.036 0.964 26 H 0.033 0.967 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.022 0.978 30 H 0.262 0.738 31 H 0.331 0.669 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.171 0.829 35 H 0.227 0.773 36 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 9.207 23.072 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C 0.117 3.883 4 H -0.007 1.007 5 C -0.563 4.563 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.553 5.553 9 Si 0.781 3.219 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.207 1.207 13 N -0.304 5.304 14 C 0.002 3.998 15 C 0.085 3.915 16 N -0.234 5.234 17 C 0.021 3.979 18 C -0.181 4.181 19 C -0.265 4.265 20 S 0.464 5.536 21 C -0.432 4.432 22 C 0.215 3.785 23 O -0.282 6.282 24 N -0.263 5.263 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.148 0.852 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.188 0.812 35 H 0.244 0.756 36 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -4.053 8.204 23.252 24.988 hybrid contribution 1.476 0.859 -1.640 2.368 sum -2.577 9.063 21.612 23.577 Atomic orbital electron populations 1.21287 0.96331 0.98305 1.00417 1.21320 0.96008 0.97516 0.98799 1.18967 0.91356 0.92093 0.85905 1.00655 1.21404 1.31590 1.11977 0.91295 0.92814 1.25579 0.95144 0.95636 1.01570 1.70010 1.37372 1.23734 1.24178 0.85550 0.78081 0.78652 0.79600 1.19443 1.20618 1.20672 1.60578 1.48616 1.16003 1.05207 1.20554 0.93475 1.00041 0.85771 1.22639 0.89123 0.85581 0.94131 1.68281 1.26498 1.10989 1.17652 1.19815 0.92566 0.95467 0.90012 1.19793 1.05709 0.93601 0.98950 1.26182 0.97653 1.04611 0.98081 1.84042 1.48177 1.00614 1.20797 1.24800 1.09608 1.01389 1.07417 1.18797 0.85561 0.86198 0.87950 1.84694 1.32585 1.63646 1.47300 1.67980 1.11168 1.40694 1.06484 0.94524 0.94777 0.93792 0.91835 0.95920 0.92879 0.85184 0.89257 0.93083 0.81163 0.75627 0.70605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.97 9.52 71.98 0.69 -4.29 16 2 C -0.10 -4.92 5.59 30.60 0.17 -4.75 16 3 C 0.22 11.62 2.30 44.17 0.10 11.72 16 4 H -0.02 -1.36 7.84 -2.38 -0.02 -1.38 16 5 C -0.52 -28.94 7.28 25.60 0.19 -28.76 16 6 H 0.05 2.97 7.60 -2.91 -0.02 2.95 16 7 C 0.02 1.12 5.30 84.65 0.45 1.57 16 8 N -0.91 -52.51 11.32 21.45 0.24 -52.27 16 9 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.67 -30.52 5.56 -499.48 -2.78 -33.30 16 14 C 0.13 5.30 5.86 85.56 0.50 5.80 16 15 C 0.36 13.26 7.18 138.91 1.00 14.26 16 16 N -0.52 -18.01 10.39 -182.65 -1.90 -19.91 16 17 C 0.16 4.58 7.02 39.52 0.28 4.86 16 18 C -0.15 -2.84 10.16 21.70 0.22 -2.62 16 19 C -0.13 -1.46 11.09 66.73 0.74 -0.72 16 20 S 0.20 2.96 23.29 -56.49 -1.32 1.64 16 21 C -0.31 -7.84 6.50 23.12 0.15 -7.69 16 22 C 0.41 11.89 7.86 85.06 0.67 12.55 16 23 O -0.47 -10.35 13.58 -88.33 -1.20 -11.55 16 24 N -0.54 -19.09 10.35 -300.65 -3.11 -22.20 16 25 H 0.04 1.82 7.09 -2.39 -0.02 1.80 16 26 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 2.02 7.72 -2.39 -0.02 2.00 16 28 H 0.06 3.52 6.06 -2.39 -0.01 3.51 16 29 H 0.02 1.06 7.48 -2.39 -0.02 1.04 16 30 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.33 15.25 8.24 -89.69 -0.74 14.51 16 32 H 0.09 3.57 7.43 -2.39 -0.02 3.55 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.23 0.46 8.06 -2.91 -0.02 0.44 16 36 H 0.43 4.42 9.06 -74.06 -0.67 3.75 16 Total: -1.00 -70.12 320.23 -3.16 -73.28 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -0.27 Total: 16.32 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 5.15 Total: 1.95 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -7.54 Total: -127.68 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -1.20 Total: -11.55 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.32 Total: 1.64 kcal Total: -70.12 -3.16 -73.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516979641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.662 kcal (2) G-P(sol) polarization free energy of solvation -70.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds