Wall clock time and date at job start Tue Mar 31 2020 07:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46892 * 2 1 4 4 H 1.09000 * 109.47134 * 305.69045 * 3 2 1 5 5 C 1.50707 * 109.46721 * 185.69194 * 3 2 1 6 6 H 1.07992 * 119.99919 * 274.99858 * 5 3 2 7 7 C 1.37881 * 119.99588 * 95.00673 * 5 3 2 8 8 N 1.31515 * 119.99392 * 184.82599 * 7 5 3 9 9 Si 1.86796 * 120.00197 * 4.82445 * 7 5 3 10 10 H 1.48508 * 109.47096 * 84.86440 * 9 7 5 11 11 H 1.48501 * 109.47202 * 204.86004 * 9 7 5 12 12 H 1.48496 * 109.47439 * 324.86263 * 9 7 5 13 13 N 1.46494 * 109.47240 * 65.69434 * 3 2 1 14 14 C 1.34783 * 119.99982 * 274.99828 * 13 3 2 15 15 O 1.21274 * 119.99813 * 0.02562 * 14 13 3 16 16 C 1.50695 * 119.99762 * 179.97438 * 14 13 3 17 17 H 1.08998 * 112.51325 * 309.66451 * 16 14 13 18 18 C 1.52892 * 113.16331 * 179.83820 * 16 14 13 19 19 C 1.51591 * 84.68247 * 244.77834 * 18 16 14 20 20 C 1.38384 * 95.24544 * 359.96813 * 19 18 16 21 21 C 1.38198 * 120.41789 * 180.02562 * 20 19 18 22 22 C 1.38222 * 120.15343 * 359.92008 * 21 20 19 23 23 C 1.38179 * 119.76253 * 0.10188 * 22 21 20 24 24 C 1.38136 * 120.16144 * 359.92766 * 23 22 21 25 25 Cl 1.73598 * 119.85100 * 180.02562 * 24 23 22 26 26 H 1.08997 * 109.47274 * 59.99786 * 1 2 3 27 27 H 1.09001 * 109.46790 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47165 * 300.00073 * 1 2 3 29 29 H 1.08998 * 109.47286 * 119.99657 * 2 1 3 30 30 H 1.08998 * 109.47165 * 239.99927 * 2 1 3 31 31 H 0.96999 * 119.99631 * 179.97438 * 8 7 5 32 32 H 0.97003 * 120.00536 * 94.99834 * 13 3 2 33 33 H 1.08999 * 113.98438 * 358.72426 * 18 16 14 34 34 H 1.08997 * 113.98502 * 130.82630 * 18 16 14 35 35 H 1.07997 * 119.92477 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.12461 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.91904 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5958 1.9850 -0.8346 5 6 3.5405 1.4449 -0.1409 6 1 4.1650 1.3334 0.7330 7 6 4.1157 1.5894 -1.3857 8 7 5.4205 1.4965 -1.5217 9 14 3.0418 1.9171 -2.8785 10 1 2.7753 3.3741 -2.9864 11 1 3.7402 1.4496 -4.1029 12 1 1.7562 1.1882 -2.7332 13 7 1.6668 2.0925 1.2587 14 6 0.4508 2.6589 1.3901 15 8 -0.3345 2.6301 0.4663 16 6 0.0667 3.3269 2.6851 17 1 0.2507 2.6928 3.5524 18 6 -1.3426 3.9193 2.6614 19 6 -0.6329 5.2507 2.8088 20 6 0.6419 4.7129 2.8309 21 6 1.7459 5.5345 2.9573 22 6 1.5844 6.9033 3.0612 23 6 0.3146 7.4477 3.0404 24 6 -0.7901 6.6279 2.9147 25 17 -2.3817 7.3205 2.8888 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 5.8251 1.5978 -2.3974 32 1 2.2947 2.1152 1.9977 33 1 -1.8594 3.7952 1.7097 34 1 -1.9533 3.6445 3.5213 35 1 2.7372 5.1062 2.9740 36 1 2.4475 7.5451 3.1595 37 1 0.1854 8.5169 3.1218 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529036048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:33 Heat of formation + Delta-G solvation = 7.738182 kcal Electronic energy + Delta-G solvation = -21062.801042 eV Core-core repulsion = 17831.712131 eV Total energy + Delta-G solvation = -3231.088911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.01211 -38.76223 -36.63275 -35.65782 -34.79034 -32.39381 -31.52212 -30.54683 -28.05883 -27.38550 -25.14909 -22.89220 -22.19522 -21.21691 -19.82723 -19.48724 -17.64153 -16.95445 -16.31130 -15.92217 -15.46542 -15.05054 -14.52896 -14.43446 -13.82035 -13.44711 -13.24734 -13.11385 -12.81008 -12.58368 -12.12467 -11.92752 -11.87420 -11.79896 -11.51559 -11.45091 -10.97579 -10.96554 -10.78583 -10.70314 -10.57155 -10.04437 -9.87076 -9.43978 -9.23557 -8.74574 -8.69712 -8.62146 -8.05170 -6.26820 -4.30479 1.08160 1.11040 2.09567 3.07710 3.24547 3.32336 3.39666 3.49999 3.91985 4.08116 4.28343 4.30006 4.51741 4.86427 5.06677 5.21002 5.22308 5.35565 5.45319 5.52566 5.66285 5.81200 6.02039 6.02586 6.06156 6.07811 6.22202 6.25524 6.48794 6.61647 6.70535 6.75771 6.94220 6.97403 7.25517 7.32474 7.52938 8.09310 8.52384 8.73493 8.91818 9.35516 10.84812 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019237 B = 0.004549 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.205811 B = 6154.288657 C = 6699.901402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.236 3.764 4 H 0.051 0.949 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.083 3.917 8 N -0.888 5.888 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.697 5.697 14 C 0.515 3.485 15 O -0.545 6.545 16 C -0.068 4.068 17 H 0.117 0.883 18 C -0.054 4.054 19 C -0.112 4.112 20 C -0.102 4.102 21 C -0.076 4.076 22 C -0.106 4.106 23 C -0.111 4.111 24 C -0.015 4.015 25 Cl -0.082 7.082 26 H 0.050 0.950 27 H 0.030 0.970 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.268 0.732 32 H 0.393 0.607 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 8.172 11.502 17.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.134 3.866 4 H 0.069 0.931 5 C -0.569 4.569 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.524 5.524 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.344 5.344 14 C 0.299 3.701 15 O -0.424 6.424 16 C -0.089 4.089 17 H 0.135 0.865 18 C -0.091 4.091 19 C -0.113 4.113 20 C -0.103 4.103 21 C -0.095 4.095 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.041 4.041 25 Cl -0.053 7.053 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.227 0.773 33 H 0.135 0.865 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.859 8.207 10.671 17.296 hybrid contribution -0.072 0.390 -0.472 0.617 sum -10.931 8.598 10.199 17.246 Atomic orbital electron populations 1.21909 0.97408 0.98887 1.02038 1.22072 0.93678 0.99391 1.01271 1.19195 0.95557 0.89111 0.82753 0.93144 1.21000 0.88645 1.51800 0.95450 0.90338 1.24921 0.94840 0.93632 0.98763 1.69879 1.09751 1.48262 1.24518 0.86933 0.81325 0.79661 0.82297 1.19902 1.21168 1.18313 1.46583 1.14186 1.55396 1.18273 1.19890 0.83032 0.78934 0.88215 1.90657 1.50990 1.59996 1.40807 1.21402 0.95423 0.93227 0.98833 0.86486 1.21772 0.95134 0.87451 1.04756 1.22309 0.97657 0.92297 0.98990 1.21294 0.93451 0.95615 0.99910 1.20421 0.98370 0.92544 0.98126 1.20981 0.96704 0.94453 1.00287 1.20881 0.91102 0.99713 1.01303 1.20570 0.86165 0.91282 1.06101 1.98353 1.25105 1.84893 1.96982 0.93106 0.95057 0.93147 0.92969 0.92080 0.92219 0.77346 0.86548 0.88202 0.84991 0.84444 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.53 37.16 0.32 -2.49 16 2 C -0.12 -2.63 5.59 -26.73 -0.15 -2.78 16 3 C 0.24 5.42 1.89 -69.08 -0.13 5.29 16 4 H 0.05 1.28 4.73 -51.93 -0.25 1.04 16 5 C -0.53 -13.88 9.05 -34.44 -0.31 -14.20 16 6 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 8 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 9 Si 0.87 21.40 26.99 -169.99 -4.59 16.81 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.26 -6.25 6.82 56.52 0.39 -5.87 16 13 N -0.70 -13.33 5.03 -54.93 -0.28 -13.60 16 14 C 0.52 9.32 5.93 -10.98 -0.07 9.26 16 15 O -0.55 -11.60 12.80 5.56 0.07 -11.53 16 16 C -0.07 -0.92 4.14 -96.56 -0.40 -1.32 16 17 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 18 C -0.05 -0.69 7.92 -27.50 -0.22 -0.91 16 19 C -0.11 -1.53 7.10 -107.45 -0.76 -2.30 16 20 C -0.10 -1.42 7.05 -104.55 -0.74 -2.15 16 21 C -0.08 -0.98 10.04 -39.60 -0.40 -1.37 16 22 C -0.11 -1.18 10.06 -39.61 -0.40 -1.58 16 23 C -0.11 -1.27 9.80 -39.64 -0.39 -1.66 16 24 C -0.01 -0.19 6.33 -39.33 -0.25 -0.44 16 25 Cl -0.08 -0.98 28.95 -51.86 -1.50 -2.48 16 26 H 0.05 1.05 7.89 -51.93 -0.41 0.64 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.95 5.63 -51.93 -0.29 0.66 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.39 6.63 8.59 -40.82 -0.35 6.28 16 33 H 0.12 1.68 7.02 -51.93 -0.36 1.32 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 322.77 15.07 4.86 4.86 Total: -1.00 -30.53 322.77 -9.26 -39.79 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -4.62 Total: 5.59 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -3.99 Total: -14.47 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.50 Total: -38.57 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.07 Total: -11.53 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.59 Total: 16.81 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.53 -9.26 -39.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529036048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.531 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds