Wall clock time and date at job start Tue Mar 31 2020 07:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46892 * 2 1 4 4 H 1.09000 * 109.47134 * 305.69045 * 3 2 1 5 5 C 1.50707 * 109.46721 * 185.69194 * 3 2 1 6 6 H 1.07992 * 119.99919 * 274.99858 * 5 3 2 7 7 C 1.37881 * 119.99588 * 95.00673 * 5 3 2 8 8 N 1.31515 * 119.99392 * 184.82599 * 7 5 3 9 9 Si 1.86796 * 120.00197 * 4.82445 * 7 5 3 10 10 H 1.48508 * 109.47096 * 84.86440 * 9 7 5 11 11 H 1.48501 * 109.47202 * 204.86004 * 9 7 5 12 12 H 1.48496 * 109.47439 * 324.86263 * 9 7 5 13 13 N 1.46494 * 109.47240 * 65.69434 * 3 2 1 14 14 C 1.34783 * 119.99982 * 274.99828 * 13 3 2 15 15 O 1.21274 * 119.99813 * 0.02562 * 14 13 3 16 16 C 1.50695 * 119.99762 * 179.97438 * 14 13 3 17 17 H 1.08998 * 112.51325 * 309.66451 * 16 14 13 18 18 C 1.52892 * 113.16331 * 179.83820 * 16 14 13 19 19 C 1.51591 * 84.68247 * 244.77834 * 18 16 14 20 20 C 1.38384 * 95.24544 * 359.96813 * 19 18 16 21 21 C 1.38198 * 120.41789 * 180.02562 * 20 19 18 22 22 C 1.38222 * 120.15343 * 359.92008 * 21 20 19 23 23 C 1.38179 * 119.76253 * 0.10188 * 22 21 20 24 24 C 1.38136 * 120.16144 * 359.92766 * 23 22 21 25 25 Cl 1.73598 * 119.85100 * 180.02562 * 24 23 22 26 26 H 1.08997 * 109.47274 * 59.99786 * 1 2 3 27 27 H 1.09001 * 109.46790 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47165 * 300.00073 * 1 2 3 29 29 H 1.08998 * 109.47286 * 119.99657 * 2 1 3 30 30 H 1.08998 * 109.47165 * 239.99927 * 2 1 3 31 31 H 0.96999 * 119.99631 * 179.97438 * 8 7 5 32 32 H 0.97003 * 120.00536 * 94.99834 * 13 3 2 33 33 H 1.08999 * 113.98438 * 358.72426 * 18 16 14 34 34 H 1.08997 * 113.98502 * 130.82630 * 18 16 14 35 35 H 1.07997 * 119.92477 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.12461 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.91904 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5958 1.9850 -0.8346 5 6 3.5405 1.4449 -0.1409 6 1 4.1650 1.3334 0.7330 7 6 4.1157 1.5894 -1.3857 8 7 5.4205 1.4965 -1.5217 9 14 3.0418 1.9171 -2.8785 10 1 2.7753 3.3741 -2.9864 11 1 3.7402 1.4496 -4.1029 12 1 1.7562 1.1882 -2.7332 13 7 1.6668 2.0925 1.2587 14 6 0.4508 2.6589 1.3901 15 8 -0.3345 2.6301 0.4663 16 6 0.0667 3.3269 2.6851 17 1 0.2507 2.6928 3.5524 18 6 -1.3426 3.9193 2.6614 19 6 -0.6329 5.2507 2.8088 20 6 0.6419 4.7129 2.8309 21 6 1.7459 5.5345 2.9573 22 6 1.5844 6.9033 3.0612 23 6 0.3146 7.4477 3.0404 24 6 -0.7901 6.6279 2.9147 25 17 -2.3817 7.3205 2.8888 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 5.8251 1.5978 -2.3974 32 1 2.2947 2.1152 1.9977 33 1 -1.8594 3.7952 1.7097 34 1 -1.9533 3.6445 3.5213 35 1 2.7372 5.1062 2.9740 36 1 2.4475 7.5451 3.1595 37 1 0.1854 8.5169 3.1218 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529036048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:32 Heat of formation + Delta-G solvation = -9.825278 kcal Electronic energy + Delta-G solvation = -21063.562650 eV Core-core repulsion = 17831.712131 eV Total energy + Delta-G solvation = -3231.850520 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.10635 -40.14488 -37.62793 -37.06454 -36.05948 -34.39434 -33.12037 -31.51148 -29.65284 -28.62252 -26.33342 -24.62639 -23.34943 -22.32407 -21.42584 -20.88312 -19.25543 -18.12169 -17.80024 -17.38759 -16.71016 -16.24838 -16.05445 -15.77018 -15.37643 -14.78856 -14.41284 -14.32177 -14.28261 -13.87540 -13.78381 -13.59720 -13.18905 -12.94336 -12.93293 -12.58042 -12.49869 -12.39602 -12.32281 -11.89710 -11.88655 -11.69198 -11.60443 -11.20255 -10.86633 -10.79578 -9.73597 -9.66415 -9.63063 -8.39607 -6.44311 0.12203 0.16993 1.15664 1.26516 1.31915 1.42040 1.71008 2.25516 2.39549 2.63109 3.03268 3.05366 3.32851 3.46380 4.00168 4.03526 4.27171 4.33376 4.34440 4.43880 4.46673 4.58015 4.60037 4.77100 4.83145 4.89327 5.04216 5.13394 5.14178 5.26978 5.29095 5.34442 5.42743 5.52515 5.57953 5.78062 5.79542 6.13216 6.61041 6.91342 7.21528 7.47069 8.75403 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019237 B = 0.004549 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.205811 B = 6154.288657 C = 6699.901402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.241 3.759 4 H 0.027 0.973 5 C -0.524 4.524 6 H 0.059 0.941 7 C 0.037 3.963 8 N -0.929 5.929 9 Si 0.920 3.080 10 H -0.279 1.279 11 H -0.278 1.278 12 H -0.255 1.255 13 N -0.697 5.697 14 C 0.515 3.485 15 O -0.578 6.578 16 C -0.058 4.058 17 H 0.150 0.850 18 C -0.049 4.049 19 C -0.128 4.128 20 C -0.123 4.123 21 C -0.090 4.090 22 C -0.103 4.103 23 C -0.111 4.111 24 C -0.029 4.029 25 Cl -0.078 7.078 26 H 0.030 0.970 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.270 0.730 32 H 0.405 0.595 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.167 0.833 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.467 8.813 12.756 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C 0.137 3.863 4 H 0.045 0.955 5 C -0.562 4.562 6 H 0.077 0.923 7 C -0.163 4.163 8 N -0.567 5.567 9 Si 0.745 3.255 10 H -0.205 1.205 11 H -0.203 1.203 12 H -0.179 1.179 13 N -0.346 5.346 14 C 0.302 3.698 15 O -0.459 6.459 16 C -0.079 4.079 17 H 0.168 0.832 18 C -0.086 4.086 19 C -0.128 4.128 20 C -0.124 4.124 21 C -0.108 4.108 22 C -0.121 4.121 23 C -0.129 4.129 24 C -0.056 4.056 25 Cl -0.049 7.049 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.240 0.760 33 H 0.115 0.885 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.184 0.816 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.983 8.852 11.951 19.099 hybrid contribution 0.272 0.258 -0.780 0.865 sum -11.711 9.109 11.171 18.572 Atomic orbital electron populations 1.21781 0.95732 1.00374 1.01267 1.21982 0.95092 0.97845 1.01294 1.18917 0.93239 0.90344 0.83787 0.95540 1.21217 0.90311 1.50156 0.94527 0.92332 1.25519 0.95596 0.94061 1.01141 1.69969 1.11113 1.50471 1.25181 0.86163 0.80159 0.79059 0.80118 1.20459 1.20349 1.17940 1.46320 1.15237 1.55694 1.17326 1.20565 0.81878 0.77951 0.89449 1.90644 1.51796 1.60974 1.42518 1.21371 0.96031 0.93414 0.97082 0.83233 1.21790 0.94773 0.87021 1.05021 1.22469 0.97831 0.92951 0.99592 1.21413 0.94062 0.95611 1.01284 1.20698 0.98460 0.93382 0.98251 1.21353 0.97688 0.94152 0.98890 1.21234 0.90750 1.00857 1.00055 1.20796 0.86910 0.91381 1.06466 1.98351 1.24851 1.84716 1.96979 0.95035 0.92382 0.92744 0.91690 0.93329 0.92096 0.76013 0.88538 0.85152 0.84430 0.81584 0.82456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 8.53 71.98 0.61 -4.36 16 2 C -0.12 -5.07 5.59 30.60 0.17 -4.89 16 3 C 0.24 10.99 1.89 44.25 0.08 11.07 16 4 H 0.03 1.35 4.73 -2.39 -0.01 1.34 16 5 C -0.52 -27.61 9.05 25.60 0.23 -27.38 16 6 H 0.06 3.27 8.06 -2.91 -0.02 3.24 16 7 C 0.04 2.08 5.47 84.66 0.46 2.54 16 8 N -0.93 -54.67 13.96 21.45 0.30 -54.37 16 9 Si 0.92 44.55 26.99 68.60 1.85 46.40 16 10 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.26 -12.10 6.82 99.48 0.68 -11.42 16 13 N -0.70 -26.08 5.03 -446.09 -2.24 -28.33 16 14 C 0.52 18.09 5.93 87.65 0.52 18.61 16 15 O -0.58 -24.36 12.80 -3.01 -0.04 -24.39 16 16 C -0.06 -1.48 4.14 -14.64 -0.06 -1.54 16 17 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 18 C -0.05 -1.17 7.92 30.10 0.24 -0.93 16 19 C -0.13 -3.29 7.10 -21.70 -0.15 -3.45 16 20 C -0.12 -3.22 7.05 -19.82 -0.14 -3.36 16 21 C -0.09 -2.14 10.04 22.26 0.22 -1.91 16 22 C -0.10 -2.04 10.06 22.25 0.22 -1.81 16 23 C -0.11 -2.25 9.80 22.23 0.22 -2.03 16 24 C -0.03 -0.70 6.33 22.43 0.14 -0.56 16 25 Cl -0.08 -1.73 28.95 -2.72 -0.08 -1.81 16 26 H 0.03 1.27 7.89 -2.39 -0.02 1.25 16 27 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.96 5.63 -2.39 -0.01 1.94 16 29 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.40 13.25 8.59 -92.71 -0.80 12.46 16 33 H 0.10 2.72 7.02 -2.39 -0.02 2.70 16 34 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 37 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -65.98 322.77 2.84 -63.14 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.27 Total: 19.37 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 2.77 Total: -20.01 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -1.94 Total: -82.69 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.04 Total: -24.39 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.85 Total: 46.40 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -65.98 2.84 -63.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529036048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.315 kcal (2) G-P(sol) polarization free energy of solvation -65.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds