Wall clock time and date at job start Tue Mar 31 2020 07:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46842 * 2 1 4 4 H 1.09000 * 109.47182 * 55.00223 * 3 2 1 5 5 C 1.50704 * 109.46809 * 175.00057 * 3 2 1 6 6 H 1.08003 * 119.99796 * 119.99908 * 5 3 2 7 7 C 1.37872 * 120.00221 * 300.00146 * 5 3 2 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00238 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46773 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46931 * 119.99924 * 9 7 5 12 12 H 1.48497 * 109.47390 * 240.00108 * 9 7 5 13 13 N 1.46498 * 109.47307 * 295.00159 * 3 2 1 14 14 C 1.34769 * 119.99893 * 85.00165 * 13 3 2 15 15 O 1.21284 * 120.00236 * 359.97438 * 14 13 3 16 16 C 1.50706 * 120.00159 * 180.02562 * 14 13 3 17 17 H 1.09006 * 112.82557 * 311.11166 * 16 14 13 18 18 C 1.53516 * 113.58980 * 180.02562 * 16 14 13 19 19 C 1.51611 * 87.33833 * 245.28847 * 18 16 14 20 20 C 1.39215 * 92.65569 * 0.04287 * 19 18 16 21 21 C 1.38339 * 119.72053 * 179.97438 * 20 19 18 22 22 C 1.38630 * 120.18923 * 359.95803 * 21 20 19 23 23 C 1.38184 * 120.04707 * 0.03711 * 22 21 20 24 24 C 1.38258 * 119.94413 * 359.97438 * 23 22 21 25 25 Cl 1.73598 * 119.85126 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46827 * 299.99643 * 1 2 3 28 28 H 1.09007 * 109.47181 * 59.99761 * 1 2 3 29 29 H 1.09004 * 109.46827 * 240.00357 * 2 1 3 30 30 H 1.08995 * 109.47513 * 119.99933 * 2 1 3 31 31 H 0.96997 * 120.00033 * 180.02562 * 8 7 5 32 32 H 0.96999 * 119.99668 * 265.00303 * 13 3 2 33 33 H 1.09002 * 113.58691 * 359.92011 * 18 16 14 34 34 H 1.08995 * 113.58742 * 130.65475 * 18 16 14 35 35 H 1.07996 * 119.82177 * 179.97438 * 21 20 19 36 36 H 1.07996 * 119.93852 * 180.02562 * 22 21 20 37 37 H 1.08009 * 120.02714 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8800 1.3810 10 1 6.5987 1.5453 0.1935 11 1 6.4000 1.6157 2.6091 12 1 6.4962 -0.5190 1.4625 13 7 1.6524 2.0976 -1.2518 14 6 0.4351 2.6644 -1.3668 15 8 -0.3396 2.6319 -0.4343 16 6 0.0361 3.3377 -2.6547 17 1 0.7930 4.0311 -3.0215 18 6 -1.3786 3.9331 -2.6240 19 6 -1.7528 2.9171 -3.6853 20 6 -0.4701 2.3766 -3.7122 21 6 -0.1866 1.3256 -4.5659 22 6 -1.1750 0.8115 -5.3909 23 6 -2.4479 1.3486 -5.3633 24 6 -2.7353 2.3992 -4.5117 25 17 -4.3350 3.0726 -4.4795 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8294 -0.0613 2.9497 32 1 2.2719 2.1232 -1.9977 33 1 -1.8944 3.7833 -1.6755 34 1 -1.4252 4.9649 -2.9723 35 1 0.8080 0.9053 -4.5885 36 1 -0.9493 -0.0093 -6.0555 37 1 -3.2176 0.9480 -6.0065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529036051.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:39 Heat of formation + Delta-G solvation = 6.575661 kcal Electronic energy + Delta-G solvation = -21041.510162 eV Core-core repulsion = 17810.370840 eV Total energy + Delta-G solvation = -3231.139321 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84708 -38.62620 -36.60949 -35.52610 -34.68926 -32.40812 -31.01187 -30.54644 -27.89036 -27.03143 -25.06486 -23.05322 -22.13125 -21.14774 -19.77491 -19.28419 -17.48863 -16.86274 -16.09211 -15.76687 -15.24921 -15.03347 -14.60252 -14.34818 -13.78434 -13.41030 -13.23179 -13.03429 -12.75600 -12.24888 -12.01809 -11.88236 -11.56090 -11.50053 -11.34970 -11.26259 -10.97952 -10.87419 -10.84009 -10.70611 -10.33414 -10.19095 -9.65240 -9.34941 -9.06364 -8.71146 -8.60924 -8.50485 -7.86455 -6.14721 -4.24356 1.06848 1.10179 2.08967 3.16568 3.21809 3.29907 3.32110 3.49033 3.98659 4.13586 4.29626 4.35929 4.53191 4.83812 5.16540 5.18625 5.24460 5.37473 5.49820 5.54690 5.66133 5.84197 6.01574 6.11579 6.22901 6.38389 6.45257 6.47122 6.65187 6.69787 7.03197 7.17990 7.34462 7.41889 7.59605 7.70345 7.87377 8.15777 8.62172 8.74533 9.07744 9.43146 10.90559 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.029435 B = 0.003713 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.016785 B = 7540.186148 C = 7678.393227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.518 3.482 15 O -0.540 6.540 16 C -0.071 4.071 17 H 0.119 0.881 18 C -0.052 4.052 19 C -0.112 4.112 20 C -0.098 4.098 21 C -0.083 4.083 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.010 4.010 25 Cl -0.081 7.081 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.030 0.970 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.389 0.611 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.601 3.481 -15.142 17.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.349 5.349 14 C 0.301 3.699 15 O -0.419 6.419 16 C -0.092 4.092 17 H 0.137 0.863 18 C -0.089 4.089 19 C -0.113 4.113 20 C -0.099 4.099 21 C -0.101 4.101 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.037 4.037 25 Cl -0.052 7.052 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.221 0.779 33 H 0.132 0.868 34 H 0.115 0.885 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.263 3.393 -14.257 17.337 hybrid contribution 1.174 -0.144 -0.363 1.238 sum -8.089 3.249 -14.620 17.021 Atomic orbital electron populations 1.21837 0.98345 0.98040 1.01216 1.21926 0.92577 0.99781 1.02238 1.18819 0.94251 0.89209 0.80905 0.93234 1.21262 0.90675 1.39020 1.06309 0.92023 1.24886 0.98597 0.94786 0.95391 1.69905 1.35050 1.37587 1.09337 0.86410 0.84878 0.77781 0.78129 1.19744 1.20877 1.20880 1.46461 1.14377 1.55533 1.18526 1.19679 0.82923 0.79511 0.87770 1.90675 1.51358 1.59775 1.40072 1.21660 0.99277 0.95704 0.92557 0.86270 1.21814 0.92772 0.96766 0.97541 1.22163 0.93167 0.99122 0.96863 1.21866 0.95329 0.96311 0.96418 1.20613 1.00159 0.94783 0.94576 1.21038 0.92059 1.00058 0.99465 1.20895 0.97765 0.95473 0.98801 1.20280 0.85500 0.97968 0.99942 1.98356 1.24015 1.84918 1.97951 0.95928 0.93184 0.94272 0.95099 0.88293 0.92599 0.77926 0.86755 0.88490 0.85331 0.84643 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.61 2.24 -69.08 -0.15 6.45 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.75 8.73 -34.44 -0.30 -14.05 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.34 11.29 55.43 0.63 -23.72 16 9 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.70 -13.93 5.02 -54.93 -0.28 -14.20 16 14 C 0.52 9.76 5.94 -10.99 -0.07 9.70 16 15 O -0.54 -12.12 12.84 5.55 0.07 -12.05 16 16 C -0.07 -1.00 4.33 -92.22 -0.40 -1.39 16 17 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 18 C -0.05 -0.69 7.76 -27.19 -0.21 -0.90 16 19 C -0.11 -1.54 7.27 -103.75 -0.75 -2.29 16 20 C -0.10 -1.35 6.98 -103.79 -0.72 -2.08 16 21 C -0.08 -1.01 10.06 -39.40 -0.40 -1.41 16 22 C -0.11 -1.14 10.06 -39.46 -0.40 -1.54 16 23 C -0.11 -1.22 9.82 -39.59 -0.39 -1.61 16 24 C -0.01 -0.13 6.32 -39.50 -0.25 -0.38 16 25 Cl -0.08 -0.96 28.94 -51.86 -1.50 -2.46 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 28 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.39 6.68 8.54 -40.82 -0.35 6.33 16 33 H 0.11 1.72 7.04 -51.93 -0.37 1.36 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 323.10 15.07 4.87 4.87 Total: -1.00 -29.57 323.10 -9.81 -39.39 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -4.62 Total: 6.74 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -3.97 Total: -13.79 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.35 Total: -37.92 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.07 Total: -12.05 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.57 -9.81 -39.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529036051.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.962 kcal (2) G-P(sol) polarization free energy of solvation -29.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds