Wall clock time and date at job start Tue Mar 31 2020 07:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46842 * 2 1 4 4 H 1.09000 * 109.47182 * 55.00223 * 3 2 1 5 5 C 1.50704 * 109.46809 * 175.00057 * 3 2 1 6 6 H 1.08003 * 119.99796 * 119.99908 * 5 3 2 7 7 C 1.37872 * 120.00221 * 300.00146 * 5 3 2 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00238 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46773 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46931 * 119.99924 * 9 7 5 12 12 H 1.48497 * 109.47390 * 240.00108 * 9 7 5 13 13 N 1.46498 * 109.47307 * 295.00159 * 3 2 1 14 14 C 1.34769 * 119.99893 * 85.00165 * 13 3 2 15 15 O 1.21284 * 120.00236 * 359.97438 * 14 13 3 16 16 C 1.50706 * 120.00159 * 180.02562 * 14 13 3 17 17 H 1.09006 * 112.82557 * 311.11166 * 16 14 13 18 18 C 1.53516 * 113.58980 * 180.02562 * 16 14 13 19 19 C 1.51611 * 87.33833 * 245.28847 * 18 16 14 20 20 C 1.39215 * 92.65569 * 0.04287 * 19 18 16 21 21 C 1.38339 * 119.72053 * 179.97438 * 20 19 18 22 22 C 1.38630 * 120.18923 * 359.95803 * 21 20 19 23 23 C 1.38184 * 120.04707 * 0.03711 * 22 21 20 24 24 C 1.38258 * 119.94413 * 359.97438 * 23 22 21 25 25 Cl 1.73598 * 119.85126 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46827 * 299.99643 * 1 2 3 28 28 H 1.09007 * 109.47181 * 59.99761 * 1 2 3 29 29 H 1.09004 * 109.46827 * 240.00357 * 2 1 3 30 30 H 1.08995 * 109.47513 * 119.99933 * 2 1 3 31 31 H 0.96997 * 120.00033 * 180.02562 * 8 7 5 32 32 H 0.96999 * 119.99668 * 265.00303 * 13 3 2 33 33 H 1.09002 * 113.58691 * 359.92011 * 18 16 14 34 34 H 1.08995 * 113.58742 * 130.65475 * 18 16 14 35 35 H 1.07996 * 119.82177 * 179.97438 * 21 20 19 36 36 H 1.07996 * 119.93852 * 180.02562 * 22 21 20 37 37 H 1.08009 * 120.02714 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8800 1.3810 10 1 6.5987 1.5453 0.1935 11 1 6.4000 1.6157 2.6091 12 1 6.4962 -0.5190 1.4625 13 7 1.6524 2.0976 -1.2518 14 6 0.4351 2.6644 -1.3668 15 8 -0.3396 2.6319 -0.4343 16 6 0.0361 3.3377 -2.6547 17 1 0.7930 4.0311 -3.0215 18 6 -1.3786 3.9331 -2.6240 19 6 -1.7528 2.9171 -3.6853 20 6 -0.4701 2.3766 -3.7122 21 6 -0.1866 1.3256 -4.5659 22 6 -1.1750 0.8115 -5.3909 23 6 -2.4479 1.3486 -5.3633 24 6 -2.7353 2.3992 -4.5117 25 17 -4.3350 3.0726 -4.4795 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8294 -0.0613 2.9497 32 1 2.2719 2.1232 -1.9977 33 1 -1.8944 3.7833 -1.6755 34 1 -1.4252 4.9649 -2.9723 35 1 0.8080 0.9053 -4.5885 36 1 -0.9493 -0.0093 -6.0555 37 1 -3.2176 0.9480 -6.0065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529036051.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:39 Heat of formation + Delta-G solvation = -9.663797 kcal Electronic energy + Delta-G solvation = -21042.214357 eV Core-core repulsion = 17810.370840 eV Total energy + Delta-G solvation = -3231.843517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.95924 -40.05711 -37.59356 -37.02153 -35.98352 -34.28651 -32.81418 -31.51169 -29.30383 -28.50487 -26.32094 -24.84838 -23.29443 -22.28607 -21.43921 -20.78981 -18.97808 -17.92370 -17.71861 -17.19307 -16.65402 -16.22907 -16.08852 -15.84110 -15.21960 -14.62371 -14.51443 -14.23686 -14.14998 -13.69653 -13.45242 -13.33707 -13.14070 -12.93452 -12.82733 -12.70642 -12.43856 -12.36922 -12.14193 -12.04261 -11.77032 -11.70762 -11.58269 -11.03408 -10.80797 -10.52928 -9.66893 -9.63154 -9.61255 -8.15002 -6.32224 0.13935 0.18725 1.16827 1.44947 1.46636 1.57909 1.74995 2.34701 2.51684 2.71584 3.08800 3.14862 3.31922 3.43661 4.04167 4.06043 4.27928 4.36613 4.47677 4.48971 4.55536 4.60878 4.74978 4.78772 4.87417 5.02405 5.06687 5.17161 5.24976 5.35656 5.43081 5.53253 5.56652 5.63744 5.79485 5.80590 5.93482 6.17686 6.76321 6.98528 7.34860 7.57789 8.90467 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.029435 B = 0.003713 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.016785 B = 7540.186148 C = 7678.393227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.259 1.259 11 H -0.286 1.286 12 H -0.280 1.280 13 N -0.699 5.699 14 C 0.515 3.485 15 O -0.581 6.581 16 C -0.062 4.062 17 H 0.150 0.850 18 C -0.051 4.051 19 C -0.130 4.130 20 C -0.116 4.116 21 C -0.091 4.091 22 C -0.102 4.102 23 C -0.109 4.109 24 C -0.025 4.025 25 Cl -0.080 7.080 26 H 0.042 0.958 27 H 0.024 0.976 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.404 0.596 33 H 0.089 0.911 34 H 0.124 0.876 35 H 0.142 0.858 36 H 0.169 0.831 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.914 3.220 -17.804 19.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.183 1.183 11 H -0.212 1.212 12 H -0.206 1.206 13 N -0.347 5.347 14 C 0.302 3.698 15 O -0.462 6.462 16 C -0.082 4.082 17 H 0.168 0.832 18 C -0.087 4.087 19 C -0.131 4.131 20 C -0.117 4.117 21 C -0.109 4.109 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.052 4.052 25 Cl -0.051 7.051 26 H 0.061 0.939 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.239 0.761 33 H 0.107 0.893 34 H 0.142 0.858 35 H 0.160 0.840 36 H 0.186 0.814 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.574 3.147 -16.965 19.267 hybrid contribution 0.879 -0.072 0.439 0.985 sum -7.695 3.075 -16.526 18.487 Atomic orbital electron populations 1.21661 0.97244 0.98901 1.00093 1.21767 0.93419 0.99322 1.01255 1.18375 0.93676 0.89082 0.81396 0.98337 1.21610 0.91373 1.38753 1.06652 0.90878 1.25756 1.03189 0.94420 0.95074 1.70058 1.36970 1.38453 1.09902 0.85342 0.79287 0.77758 0.78214 1.18315 1.21165 1.20581 1.46210 1.15364 1.55609 1.17497 1.20474 0.81791 0.78565 0.89015 1.90660 1.52364 1.61065 1.42141 1.21567 1.00467 0.96241 0.89971 0.83232 1.21797 0.91886 0.98452 0.96612 1.22235 0.93740 0.99634 0.97485 1.21863 0.95268 0.97421 0.97176 1.20932 1.01356 0.94242 0.94345 1.21449 0.91289 1.00237 0.98986 1.21273 0.98701 0.94518 0.98225 1.20522 0.85538 0.98665 1.00429 1.98353 1.23757 1.84993 1.97969 0.93919 0.95671 0.93959 0.94032 0.91075 0.92670 0.76127 0.89260 0.85764 0.84013 0.81355 0.82291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.51 71.98 0.61 -4.93 16 2 C -0.12 -5.80 5.45 30.60 0.17 -5.63 16 3 C 0.28 13.95 2.24 44.25 0.10 14.05 16 4 H 0.00 -0.08 7.58 -2.39 -0.02 -0.09 16 5 C -0.55 -28.15 8.73 25.60 0.22 -27.93 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.83 5.29 84.65 0.45 1.28 16 8 N -0.92 -51.82 11.29 21.45 0.24 -51.58 16 9 Si 0.97 41.33 29.54 68.60 2.03 43.36 16 10 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 11 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 13 N -0.70 -27.66 5.02 -446.09 -2.24 -29.90 16 14 C 0.52 19.54 5.94 87.66 0.52 20.06 16 15 O -0.58 -27.03 12.84 -3.04 -0.04 -27.07 16 16 C -0.06 -1.66 4.33 -11.83 -0.05 -1.72 16 17 H 0.15 3.05 8.14 -2.38 -0.02 3.03 16 18 C -0.05 -1.31 7.76 30.30 0.24 -1.07 16 19 C -0.13 -3.40 7.27 -19.30 -0.14 -3.54 16 20 C -0.12 -2.99 6.98 -19.33 -0.13 -3.13 16 21 C -0.09 -1.97 10.06 22.39 0.23 -1.74 16 22 C -0.10 -1.80 10.06 22.35 0.22 -1.58 16 23 C -0.11 -2.08 9.82 22.26 0.22 -1.86 16 24 C -0.03 -0.60 6.32 22.32 0.14 -0.46 16 25 Cl -0.08 -1.78 28.94 -2.72 -0.08 -1.86 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.02 1.23 7.85 -2.39 -0.02 1.21 16 28 H 0.04 1.87 5.64 -2.38 -0.01 1.86 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 3.91 5.95 -2.39 -0.01 3.89 16 31 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 32 H 0.40 13.40 8.54 -92.71 -0.79 12.60 16 33 H 0.09 2.77 7.04 -2.39 -0.02 2.75 16 34 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 36 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 37 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -65.81 323.10 3.01 -62.81 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.31 Total: 22.45 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 2.79 Total: -18.21 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -2.00 Total: -81.48 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.04 Total: -27.07 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.08 Total: -1.86 kcal Total: -65.81 3.01 -62.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529036051.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.142 kcal (2) G-P(sol) polarization free energy of solvation -65.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds