Wall clock time and date at job start Tue Mar 31 2020 07:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47088 * 2 1 4 4 H 1.09000 * 109.46803 * 305.69148 * 3 2 1 5 5 C 1.50706 * 109.46984 * 185.69616 * 3 2 1 6 6 H 1.07993 * 119.99897 * 275.00238 * 5 3 2 7 7 C 1.37879 * 119.99800 * 95.00517 * 5 3 2 8 8 N 1.31516 * 119.99948 * 184.82914 * 7 5 3 9 9 Si 1.86801 * 120.00205 * 4.82717 * 7 5 3 10 10 H 1.48502 * 109.47280 * 84.85930 * 9 7 5 11 11 H 1.48494 * 109.47377 * 204.86264 * 9 7 5 12 12 H 1.48503 * 109.47144 * 324.86399 * 9 7 5 13 13 N 1.46494 * 109.47295 * 65.69552 * 3 2 1 14 14 C 1.34769 * 120.00266 * 275.00377 * 13 3 2 15 15 O 1.21282 * 120.00082 * 359.97438 * 14 13 3 16 16 C 1.50704 * 120.00418 * 180.02562 * 14 13 3 17 17 H 1.09000 * 112.88485 * 51.65793 * 16 14 13 18 18 C 1.52257 * 113.15935 * 183.05048 * 16 14 13 19 19 C 1.50551 * 87.24013 * 114.73482 * 18 16 14 20 20 C 1.37756 * 92.76679 * 359.76504 * 19 18 16 21 21 C 1.38768 * 119.93799 * 180.40053 * 20 19 18 22 22 C 1.38121 * 120.11813 * 359.70276 * 21 20 19 23 23 C 1.38162 * 119.99639 * 0.02562 * 22 21 20 24 24 C 1.38228 * 119.96885 * 0.02562 * 23 22 21 25 25 Cl 1.73605 * 119.97148 * 179.97438 * 24 23 22 26 26 H 1.08997 * 109.47190 * 59.99911 * 1 2 3 27 27 H 1.09005 * 109.47152 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47269 * 300.00142 * 1 2 3 29 29 H 1.08999 * 109.47269 * 239.99858 * 2 1 3 30 30 H 1.09006 * 109.47657 * 119.99695 * 2 1 3 31 31 H 0.97000 * 120.00078 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99786 * 94.99831 * 13 3 2 33 33 H 1.09001 * 114.02133 * 0.08120 * 18 16 14 34 34 H 1.09004 * 113.23203 * 229.26975 * 18 16 14 35 35 H 1.07997 * 119.93985 * 179.71707 * 21 20 19 36 36 H 1.07995 * 120.00138 * 180.02562 * 22 21 20 37 37 H 1.08009 * 120.01927 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5957 1.9849 -0.8347 5 6 3.5404 1.4449 -0.1410 6 1 4.1650 1.3334 0.7328 7 6 4.1156 1.5894 -1.3858 8 7 5.4203 1.4965 -1.5220 9 14 3.0416 1.9171 -2.8786 10 1 2.7751 3.3741 -2.9865 11 1 3.7398 1.4497 -4.1030 12 1 1.7560 1.1883 -2.7332 13 7 1.6668 2.0925 1.2587 14 6 0.4509 2.6588 1.3902 15 8 -0.3342 2.6308 0.4662 16 6 0.0672 3.3279 2.6849 17 1 0.8057 4.0558 3.0209 18 6 -1.3633 3.8492 2.6885 19 6 -1.6519 2.8379 3.7658 20 6 -0.3591 2.3624 3.7587 21 6 0.0035 1.3290 4.6110 22 6 -0.9281 0.7806 5.4708 23 6 -2.2236 1.2605 5.4828 24 6 -2.5869 2.2891 4.6338 25 17 -4.2150 2.8916 4.6484 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 5.8250 1.5978 -2.3977 32 1 2.2948 2.1151 1.9977 33 1 -1.9051 3.6649 1.7608 34 1 -1.4437 4.8822 3.0272 35 1 1.0159 0.9531 4.6022 36 1 -0.6438 -0.0232 6.1336 37 1 -2.9525 0.8317 6.1547 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529036053.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:43 Heat of formation + Delta-G solvation = 7.773917 kcal Electronic energy + Delta-G solvation = -21127.269060 eV Core-core repulsion = 17896.181699 eV Total energy + Delta-G solvation = -3231.087361 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.14268 -38.78348 -36.69213 -35.70775 -34.83711 -32.39733 -31.52764 -30.60701 -28.06462 -27.42906 -25.17216 -22.88259 -22.25951 -21.22543 -19.84254 -19.49612 -17.67012 -17.01956 -16.30686 -15.98018 -15.41736 -15.09428 -14.81856 -14.27196 -13.82601 -13.46966 -13.37863 -13.13743 -12.81162 -12.46001 -12.25390 -11.97702 -11.90473 -11.78487 -11.57183 -11.46356 -10.97400 -10.91261 -10.80036 -10.69380 -10.68021 -10.03468 -9.87117 -9.47517 -9.23611 -8.75686 -8.74501 -8.66143 -8.05739 -6.26822 -4.30728 1.00045 1.06896 2.04298 3.06969 3.24277 3.32297 3.39606 3.43537 3.90312 4.10577 4.25556 4.29845 4.48873 4.79089 5.07105 5.13918 5.19437 5.34380 5.45260 5.48505 5.61095 5.79440 5.96260 6.03182 6.06707 6.07375 6.18797 6.23397 6.43129 6.62225 6.64582 6.76621 6.94243 6.98647 7.25745 7.31951 7.52743 8.09055 8.52129 8.73367 8.91297 9.35261 10.84783 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.004072 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.446599 B = 6875.026380 C = 7147.475247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.237 3.763 4 H 0.052 0.948 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.888 5.888 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.697 5.697 14 C 0.517 3.483 15 O -0.545 6.545 16 C -0.071 4.071 17 H 0.123 0.877 18 C -0.055 4.055 19 C -0.111 4.111 20 C -0.100 4.100 21 C -0.082 4.082 22 C -0.108 4.108 23 C -0.110 4.110 24 C -0.011 4.011 25 Cl -0.080 7.080 26 H 0.050 0.950 27 H 0.029 0.971 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.268 0.732 32 H 0.393 0.607 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.129 1.555 14.082 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C 0.134 3.866 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.524 5.524 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.344 5.344 14 C 0.301 3.699 15 O -0.424 6.424 16 C -0.093 4.093 17 H 0.141 0.859 18 C -0.092 4.092 19 C -0.112 4.112 20 C -0.101 4.101 21 C -0.100 4.100 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.037 4.037 25 Cl -0.051 7.051 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.227 0.773 33 H 0.133 0.867 34 H 0.115 0.885 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.643 1.563 13.261 19.091 hybrid contribution -0.183 0.119 -0.340 0.404 sum -13.826 1.682 12.922 18.999 Atomic orbital electron populations 1.21900 0.97419 0.98858 1.02020 1.22065 0.93632 0.99432 1.01196 1.19195 0.95531 0.89120 0.82725 0.93062 1.21003 0.88639 1.51843 0.95472 0.90346 1.24932 0.94860 0.93633 0.98796 1.69880 1.09776 1.48221 1.24532 0.86915 0.81290 0.79659 0.82234 1.19830 1.21191 1.18338 1.46579 1.14182 1.55443 1.18198 1.19820 0.82869 0.79311 0.87883 1.90661 1.50824 1.60013 1.40922 1.21285 0.99500 0.96218 0.92255 0.85914 1.21446 0.93313 0.97223 0.97207 1.21716 0.93578 0.99116 0.96767 1.21429 0.95322 0.96669 0.96641 1.20619 1.00436 0.94621 0.94318 1.20926 0.92282 1.00155 0.99278 1.20899 0.97284 0.95804 0.98846 1.20409 0.85333 0.98470 0.99529 1.98358 1.21253 1.87491 1.97988 0.93125 0.95156 0.93160 0.92100 0.93062 0.92207 0.77331 0.86690 0.88483 0.85245 0.84598 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.53 37.15 0.32 -2.57 16 2 C -0.12 -2.65 5.59 -26.73 -0.15 -2.80 16 3 C 0.24 5.42 1.89 -69.08 -0.13 5.29 16 4 H 0.05 1.29 4.73 -51.93 -0.25 1.05 16 5 C -0.53 -13.88 9.05 -34.44 -0.31 -14.19 16 6 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 8 N -0.89 -25.70 13.96 55.43 0.77 -24.92 16 9 Si 0.87 21.21 26.99 -169.99 -4.59 16.62 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.26 -6.22 6.82 56.52 0.39 -5.83 16 13 N -0.70 -13.29 5.03 -54.93 -0.28 -13.57 16 14 C 0.52 9.33 5.95 -10.99 -0.07 9.26 16 15 O -0.55 -11.57 12.80 5.56 0.07 -11.50 16 16 C -0.07 -0.97 4.31 -93.65 -0.40 -1.37 16 17 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 18 C -0.06 -0.70 7.66 -28.62 -0.22 -0.92 16 19 C -0.11 -1.46 7.21 -104.92 -0.76 -2.21 16 20 C -0.10 -1.31 6.90 -104.95 -0.72 -2.03 16 21 C -0.08 -0.94 10.06 -39.43 -0.40 -1.34 16 22 C -0.11 -1.08 10.04 -39.65 -0.40 -1.48 16 23 C -0.11 -1.15 9.82 -39.61 -0.39 -1.54 16 24 C -0.01 -0.13 6.33 -39.35 -0.25 -0.38 16 25 Cl -0.08 -0.91 28.96 -51.86 -1.50 -2.41 16 26 H 0.05 1.07 7.89 -51.93 -0.41 0.67 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 1.01 5.63 -51.93 -0.29 0.72 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.39 6.62 8.59 -40.82 -0.35 6.27 16 33 H 0.12 1.66 7.01 -51.93 -0.36 1.30 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 322.67 15.07 4.86 4.86 Total: -1.00 -30.32 322.67 -9.25 -39.57 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.62 Total: 5.48 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -3.97 Total: -14.14 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.50 Total: -38.49 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.59 Total: 16.62 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.32 -9.25 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529036053.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.344 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds