Wall clock time and date at job start Tue Mar 31 2020 07:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47088 * 2 1 4 4 H 1.09000 * 109.46803 * 305.69148 * 3 2 1 5 5 C 1.50706 * 109.46984 * 185.69616 * 3 2 1 6 6 H 1.07993 * 119.99897 * 275.00238 * 5 3 2 7 7 C 1.37879 * 119.99800 * 95.00517 * 5 3 2 8 8 N 1.31516 * 119.99948 * 184.82914 * 7 5 3 9 9 Si 1.86801 * 120.00205 * 4.82717 * 7 5 3 10 10 H 1.48502 * 109.47280 * 84.85930 * 9 7 5 11 11 H 1.48494 * 109.47377 * 204.86264 * 9 7 5 12 12 H 1.48503 * 109.47144 * 324.86399 * 9 7 5 13 13 N 1.46494 * 109.47295 * 65.69552 * 3 2 1 14 14 C 1.34769 * 120.00266 * 275.00377 * 13 3 2 15 15 O 1.21282 * 120.00082 * 359.97438 * 14 13 3 16 16 C 1.50704 * 120.00418 * 180.02562 * 14 13 3 17 17 H 1.09000 * 112.88485 * 51.65793 * 16 14 13 18 18 C 1.52257 * 113.15935 * 183.05048 * 16 14 13 19 19 C 1.50551 * 87.24013 * 114.73482 * 18 16 14 20 20 C 1.37756 * 92.76679 * 359.76504 * 19 18 16 21 21 C 1.38768 * 119.93799 * 180.40053 * 20 19 18 22 22 C 1.38121 * 120.11813 * 359.70276 * 21 20 19 23 23 C 1.38162 * 119.99639 * 0.02562 * 22 21 20 24 24 C 1.38228 * 119.96885 * 0.02562 * 23 22 21 25 25 Cl 1.73605 * 119.97148 * 179.97438 * 24 23 22 26 26 H 1.08997 * 109.47190 * 59.99911 * 1 2 3 27 27 H 1.09005 * 109.47152 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47269 * 300.00142 * 1 2 3 29 29 H 1.08999 * 109.47269 * 239.99858 * 2 1 3 30 30 H 1.09006 * 109.47657 * 119.99695 * 2 1 3 31 31 H 0.97000 * 120.00078 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99786 * 94.99831 * 13 3 2 33 33 H 1.09001 * 114.02133 * 0.08120 * 18 16 14 34 34 H 1.09004 * 113.23203 * 229.26975 * 18 16 14 35 35 H 1.07997 * 119.93985 * 179.71707 * 21 20 19 36 36 H 1.07995 * 120.00138 * 180.02562 * 22 21 20 37 37 H 1.08009 * 120.01927 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5957 1.9849 -0.8347 5 6 3.5404 1.4449 -0.1410 6 1 4.1650 1.3334 0.7328 7 6 4.1156 1.5894 -1.3858 8 7 5.4203 1.4965 -1.5220 9 14 3.0416 1.9171 -2.8786 10 1 2.7751 3.3741 -2.9865 11 1 3.7398 1.4497 -4.1030 12 1 1.7560 1.1883 -2.7332 13 7 1.6668 2.0925 1.2587 14 6 0.4509 2.6588 1.3902 15 8 -0.3342 2.6308 0.4662 16 6 0.0672 3.3279 2.6849 17 1 0.8057 4.0558 3.0209 18 6 -1.3633 3.8492 2.6885 19 6 -1.6519 2.8379 3.7658 20 6 -0.3591 2.3624 3.7587 21 6 0.0035 1.3290 4.6110 22 6 -0.9281 0.7806 5.4708 23 6 -2.2236 1.2605 5.4828 24 6 -2.5869 2.2891 4.6338 25 17 -4.2150 2.8916 4.6484 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 5.8250 1.5978 -2.3977 32 1 2.2948 2.1151 1.9977 33 1 -1.9051 3.6649 1.7608 34 1 -1.4437 4.8822 3.0272 35 1 1.0159 0.9531 4.6022 36 1 -0.6438 -0.0232 6.1336 37 1 -2.9525 0.8317 6.1547 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529036053.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:42 Heat of formation + Delta-G solvation = -9.576031 kcal Electronic energy + Delta-G solvation = -21128.021410 eV Core-core repulsion = 17896.181699 eV Total energy + Delta-G solvation = -3231.839711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.19302 -40.15416 -37.63830 -37.07086 -36.09365 -34.39070 -33.15029 -31.50039 -29.64491 -28.64221 -26.33247 -24.62997 -23.36101 -22.30012 -21.43456 -20.87475 -19.26724 -18.13626 -17.79597 -17.37509 -16.65136 -16.37853 -16.01839 -15.84173 -15.27117 -14.78301 -14.59463 -14.25031 -14.19487 -13.85988 -13.78400 -13.61139 -13.28562 -12.96937 -12.91567 -12.58808 -12.44172 -12.41080 -12.31826 -11.87926 -11.79670 -11.75249 -11.65665 -11.20724 -10.87420 -10.80047 -9.71304 -9.67756 -9.62388 -8.38601 -6.44072 0.12150 0.20089 1.16877 1.29022 1.34129 1.44394 1.71031 2.27155 2.39030 2.65129 3.02267 3.12306 3.33227 3.44998 4.00610 4.04860 4.27014 4.30931 4.36166 4.40266 4.49949 4.54822 4.60489 4.78715 4.81950 4.88183 5.02437 5.09593 5.16716 5.23854 5.26257 5.36398 5.42132 5.53916 5.54423 5.78100 5.80309 6.13569 6.61472 6.91071 7.21973 7.46687 8.76317 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.004072 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.446599 B = 6875.026380 C = 7147.475247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.121 4.121 3 C 0.242 3.758 4 H 0.030 0.970 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.036 3.964 8 N -0.929 5.929 9 Si 0.922 3.078 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.257 1.257 13 N -0.697 5.697 14 C 0.517 3.483 15 O -0.578 6.578 16 C -0.064 4.064 17 H 0.149 0.851 18 C -0.053 4.053 19 C -0.127 4.127 20 C -0.116 4.116 21 C -0.089 4.089 22 C -0.102 4.102 23 C -0.107 4.107 24 C -0.026 4.026 25 Cl -0.079 7.079 26 H 0.032 0.968 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.270 0.730 32 H 0.405 0.595 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.142 0.858 36 H 0.168 0.832 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.428 1.102 15.768 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.161 4.161 3 C 0.138 3.862 4 H 0.048 0.952 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.165 4.165 8 N -0.568 5.568 9 Si 0.748 3.252 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.181 1.181 13 N -0.345 5.345 14 C 0.304 3.696 15 O -0.459 6.459 16 C -0.085 4.085 17 H 0.166 0.834 18 C -0.090 4.090 19 C -0.128 4.128 20 C -0.117 4.117 21 C -0.107 4.107 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.052 4.052 25 Cl -0.050 7.050 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.240 0.760 33 H 0.112 0.888 34 H 0.139 0.861 35 H 0.160 0.840 36 H 0.186 0.814 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.952 1.117 14.976 21.192 hybrid contribution 0.186 0.232 -0.743 0.800 sum -14.767 1.349 14.233 20.554 Atomic orbital electron populations 1.21753 0.96064 1.00107 1.01024 1.21975 0.94710 0.98161 1.01212 1.18905 0.93250 0.90189 0.83848 0.95188 1.21206 0.90246 1.50323 0.94568 0.92402 1.25557 0.95656 0.93983 1.01269 1.69974 1.11206 1.50379 1.25233 0.86115 0.79966 0.79320 0.79836 1.19938 1.20480 1.18077 1.46309 1.15217 1.55745 1.17266 1.20485 0.81699 0.78358 0.89082 1.90647 1.51602 1.61040 1.42651 1.21213 1.00555 0.96786 0.89924 0.83390 1.21423 0.92375 0.98757 0.96471 1.21779 0.94083 0.99588 0.97351 1.21417 0.95308 0.97704 0.97298 1.20918 1.01517 0.94146 0.94165 1.21322 0.91619 1.00240 0.98798 1.21268 0.98095 0.94869 0.98332 1.20635 0.85398 0.99157 1.00016 1.98356 1.21058 1.87571 1.98002 0.94864 0.92706 0.93378 0.93205 0.91921 0.92071 0.75994 0.88838 0.86076 0.84049 0.81421 0.82353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.53 71.98 0.61 -4.49 16 2 C -0.12 -5.08 5.59 30.59 0.17 -4.91 16 3 C 0.24 11.02 1.89 44.25 0.08 11.10 16 4 H 0.03 1.51 4.73 -2.39 -0.01 1.50 16 5 C -0.53 -27.62 9.05 25.60 0.23 -27.39 16 6 H 0.06 3.23 8.06 -2.91 -0.02 3.20 16 7 C 0.04 1.99 5.47 84.65 0.46 2.45 16 8 N -0.93 -54.58 13.96 21.45 0.30 -54.28 16 9 Si 0.92 44.09 26.99 68.60 1.85 45.95 16 10 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.26 -12.05 6.82 99.48 0.68 -11.37 16 13 N -0.70 -26.09 5.03 -446.10 -2.24 -28.33 16 14 C 0.52 18.25 5.95 87.66 0.52 18.77 16 15 O -0.58 -24.48 12.80 -3.04 -0.04 -24.52 16 16 C -0.06 -1.64 4.31 -12.76 -0.05 -1.70 16 17 H 0.15 2.97 8.14 -2.39 -0.02 2.95 16 18 C -0.05 -1.30 7.66 29.37 0.22 -1.08 16 19 C -0.13 -3.13 7.21 -20.06 -0.14 -3.28 16 20 C -0.12 -2.82 6.90 -20.08 -0.14 -2.96 16 21 C -0.09 -1.82 10.06 22.37 0.22 -1.59 16 22 C -0.10 -1.68 10.04 22.22 0.22 -1.46 16 23 C -0.11 -1.92 9.82 22.25 0.22 -1.70 16 24 C -0.03 -0.57 6.33 22.42 0.14 -0.43 16 25 Cl -0.08 -1.67 28.96 -2.72 -0.08 -1.75 16 26 H 0.03 1.38 7.89 -2.39 -0.02 1.36 16 27 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.05 1.86 5.63 -2.39 -0.01 1.85 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 31 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.40 13.25 8.59 -92.70 -0.80 12.45 16 33 H 0.09 2.70 7.01 -2.39 -0.02 2.69 16 34 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 36 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 37 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -65.47 322.67 2.84 -62.62 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.27 Total: 18.98 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 2.78 Total: -18.66 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -1.94 Total: -82.62 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.04 Total: -24.52 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.85 Total: 45.95 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.08 Total: -1.75 kcal Total: -65.47 2.84 -62.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529036053.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.046 kcal (2) G-P(sol) polarization free energy of solvation -65.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds