Wall clock time and date at job start Tue Mar 31 2020 07:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31733 * 123.76253 * 2 1 4 4 N 1.27583 * 118.27030 * 180.30144 * 3 2 1 5 5 S 1.56510 * 109.21877 * 359.73632 * 4 3 2 6 6 C 1.35337 * 123.76593 * 179.81088 * 2 1 3 7 7 C 1.50701 * 127.92415 * 0.02562 * 6 2 1 8 8 N 1.46901 * 109.47266 * 97.01339 * 7 6 2 9 9 C 1.46898 * 110.99731 * 298.41324 * 8 7 6 10 10 C 1.50699 * 109.47090 * 166.18195 * 9 8 7 11 11 H 1.07992 * 120.00179 * 4.45957 * 10 9 8 12 12 C 1.37883 * 119.99721 * 184.45609 * 10 9 8 13 13 N 1.31513 * 120.00351 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99532 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47369 * 60.00231 * 14 12 10 16 16 H 1.48505 * 109.46902 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47268 * 300.00072 * 14 12 10 18 18 C 1.46896 * 111.00376 * 174.45741 * 8 7 6 19 19 C 1.50700 * 109.47087 * 293.95505 * 18 8 7 20 20 C 1.34511 * 125.79196 * 89.99721 * 19 18 8 21 21 C 1.41383 * 106.84422 * 179.97438 * 20 19 18 22 22 C 1.34516 * 106.83913 * 359.97438 * 21 20 19 23 23 O 1.34308 * 108.42260 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.46902 * 270.18936 * 1 2 3 25 25 H 1.08997 * 109.47440 * 30.18815 * 1 2 3 26 26 H 1.08997 * 109.47031 * 150.19511 * 1 2 3 27 27 H 1.08997 * 109.47615 * 337.01289 * 7 6 2 28 28 H 1.09003 * 109.47008 * 217.00798 * 7 6 2 29 29 H 1.09002 * 109.47320 * 286.18394 * 9 8 7 30 30 H 1.09004 * 109.47107 * 46.18415 * 9 8 7 31 31 H 0.97001 * 119.99936 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.47295 * 173.95327 * 18 8 7 33 33 H 1.09003 * 109.47042 * 53.95107 * 18 8 7 34 34 H 1.08005 * 126.58065 * 0.02562 * 20 19 18 35 35 H 1.07998 * 126.58271 * 180.02562 * 21 20 19 36 36 H 1.08001 * 125.79201 * 180.25887 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2392 1.0952 0.0000 4 7 3.5091 0.9731 -0.0059 5 16 3.8805 -0.5473 -0.0052 6 6 2.2593 -1.1251 0.0037 7 6 1.7858 -2.5558 0.0079 8 7 1.7931 -3.0780 -1.3651 9 6 0.8777 -2.3144 -2.2235 10 6 1.1540 -2.6412 -3.6685 11 1 1.8815 -3.3982 -3.9214 12 6 0.4779 -1.9736 -4.6677 13 7 -0.4077 -1.0514 -4.3598 14 14 0.8210 -2.3782 -6.4588 15 1 0.5128 -3.8088 -6.7110 16 1 -0.0288 -1.5272 -7.3300 17 1 2.2521 -2.1197 -6.7594 18 6 1.4633 -4.5093 -1.3858 19 6 2.5574 -5.2869 -0.7007 20 6 2.6076 -5.5864 0.6096 21 6 3.7974 -6.3216 0.8165 22 6 4.4029 -6.4279 -0.3800 23 8 3.6474 -5.7991 -1.2953 24 1 -0.3633 0.0034 1.0277 25 1 -0.3634 0.8882 -0.5167 26 1 -0.3633 -0.8917 -0.5108 27 1 0.7734 -2.6024 0.4090 28 1 2.4506 -3.1566 0.6286 29 1 -0.1520 -2.5780 -1.9819 30 1 1.0283 -1.2477 -2.0570 31 1 -0.8836 -0.5821 -5.0628 32 1 1.3701 -4.8459 -2.4183 33 1 0.5202 -4.6724 -0.8640 34 1 1.8785 -5.3177 1.3597 35 1 4.1517 -6.7219 1.7549 36 1 5.3361 -6.9361 -0.5727 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565402807.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:10 Heat of formation + Delta-G solvation = 71.274783 kcal Electronic energy + Delta-G solvation = -21308.236968 eV Core-core repulsion = 18114.239668 eV Total energy + Delta-G solvation = -3193.997300 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.35394 -41.91857 -38.77204 -34.88612 -34.48174 -33.69651 -31.50407 -30.65551 -28.47689 -27.91594 -26.49668 -25.35021 -22.84596 -22.51201 -21.29145 -20.86917 -19.54574 -18.61488 -18.09398 -17.23705 -16.94725 -16.59537 -16.45972 -15.92802 -15.44820 -15.03237 -14.60524 -14.29160 -14.15349 -13.98683 -13.80391 -13.56727 -13.45354 -13.21319 -13.19578 -12.97348 -12.71033 -12.60854 -12.33411 -12.18214 -11.91538 -11.33186 -11.06160 -10.72894 -10.59801 -10.55554 -10.43435 -9.34681 -9.07263 -8.19283 -6.26852 -0.73247 0.22915 0.78165 0.91258 1.24014 1.39592 1.41363 1.48591 1.82174 2.26985 2.39657 3.12771 3.14415 3.33403 3.75115 3.78889 3.97459 4.26330 4.27866 4.39211 4.41536 4.53748 4.57230 4.68667 4.72169 4.79058 5.04855 5.10599 5.15842 5.21128 5.26742 5.33918 5.63942 5.76331 6.03361 6.21664 6.37937 6.52382 6.80073 6.86769 7.41504 8.90022 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.009409 B = 0.007850 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.042906 B = 3566.135322 C = 5629.248794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.020 3.980 3 N -0.271 5.271 4 N -0.334 5.334 5 S 0.480 5.520 6 C -0.240 4.240 7 C 0.132 3.868 8 N -0.539 5.539 9 C 0.208 3.792 10 C -0.526 4.526 11 H 0.057 0.943 12 C 0.011 3.989 13 N -0.923 5.923 14 Si 0.953 3.047 15 H -0.266 1.266 16 H -0.285 1.285 17 H -0.277 1.277 18 C 0.139 3.861 19 C -0.013 4.013 20 C -0.212 4.212 21 C -0.219 4.219 22 C -0.050 4.050 23 O -0.195 6.195 24 H 0.106 0.894 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.109 0.891 29 H -0.021 1.021 30 H 0.025 0.975 31 H 0.263 0.737 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.162 0.838 35 H 0.172 0.828 36 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.099 -9.012 12.935 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.126 4.126 3 N -0.137 5.137 4 N -0.313 5.313 5 S 0.615 5.385 6 C -0.379 4.379 7 C 0.003 3.997 8 N -0.264 5.264 9 C 0.082 3.918 10 C -0.564 4.564 11 H 0.075 0.925 12 C -0.188 4.188 13 N -0.563 5.563 14 Si 0.779 3.221 15 H -0.191 1.191 16 H -0.210 1.210 17 H -0.203 1.203 18 C 0.012 3.988 19 C -0.063 4.063 20 C -0.232 4.232 21 C -0.238 4.238 22 C -0.117 4.117 23 O -0.091 6.091 24 H 0.124 0.876 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.127 0.873 29 H -0.004 1.004 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.179 0.821 35 H 0.190 0.810 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 8.116 -7.658 12.348 16.643 hybrid contribution -2.228 -0.436 -0.879 2.434 sum 5.888 -8.093 11.469 15.222 Atomic orbital electron populations 1.20371 0.84234 1.03929 1.04123 1.22470 1.01052 0.86741 1.02301 1.71162 0.97224 1.28993 1.16312 1.78523 1.10546 1.17387 1.24820 1.80883 1.08867 0.99070 1.49645 1.27019 0.99655 1.02309 1.08904 1.20501 1.01111 0.86375 0.91727 1.62050 1.54566 1.02025 1.07793 1.19514 0.88089 0.93302 0.90875 1.21427 1.22087 1.21029 0.91893 0.92462 1.25691 0.95061 0.94967 1.03093 1.70026 1.26667 1.25417 1.34231 0.85682 0.77939 0.78522 0.79974 1.19083 1.21013 1.20257 1.20321 0.91496 0.86006 1.01015 1.22435 0.89703 1.01361 0.92811 1.21860 1.01377 1.04959 0.95042 1.22106 0.96610 1.05122 0.99916 1.24794 0.98806 1.00768 0.87322 1.84065 1.29564 1.55804 1.39699 0.87566 0.91039 0.90622 0.91500 0.87272 1.00365 0.95667 0.92838 0.90263 0.90642 0.82070 0.81011 0.75194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.14 9.56 71.24 0.68 -1.46 16 2 C 0.02 0.74 5.94 41.91 0.25 0.99 16 3 N -0.27 -10.74 11.68 -51.27 -0.60 -11.34 16 4 N -0.33 -12.54 12.54 37.02 0.46 -12.08 16 5 S 0.48 15.10 23.40 -56.49 -1.32 13.78 16 6 C -0.24 -8.11 5.20 25.02 0.13 -7.98 16 7 C 0.13 4.08 5.01 85.56 0.43 4.51 16 8 N -0.54 -20.64 4.48 -909.95 -4.08 -24.72 16 9 C 0.21 9.92 3.52 85.56 0.30 10.22 16 10 C -0.53 -28.39 8.50 25.60 0.22 -28.18 16 11 H 0.06 3.10 7.28 -2.91 -0.02 3.07 16 12 C 0.01 0.61 5.46 84.66 0.46 1.07 16 13 N -0.92 -53.42 13.29 21.45 0.28 -53.13 16 14 Si 0.95 43.91 29.54 68.60 2.03 45.93 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 C 0.14 4.73 5.34 85.56 0.46 5.19 16 19 C -0.01 -0.37 6.23 24.83 0.15 -0.22 16 20 C -0.21 -5.00 9.26 22.19 0.21 -4.80 16 21 C -0.22 -4.37 10.91 22.19 0.24 -4.13 16 22 C -0.05 -1.07 12.09 66.97 0.81 -0.26 16 23 O -0.20 -5.96 10.65 -2.59 -0.03 -5.99 16 24 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 25 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.08 2.64 5.70 -2.39 -0.01 2.63 16 27 H 0.07 1.87 7.45 -2.39 -0.02 1.86 16 28 H 0.11 2.86 6.01 -2.39 -0.01 2.85 16 29 H -0.02 -1.06 7.84 -2.39 -0.02 -1.08 16 30 H 0.03 1.32 5.15 -2.39 -0.01 1.31 16 31 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.08 3.10 6.85 -2.39 -0.02 3.08 16 33 H 0.08 2.27 8.12 -2.39 -0.02 2.25 16 34 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 35 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 36 H 0.23 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -66.95 317.10 2.19 -64.76 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.11 Total: 7.83 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 4.34 Total: -25.05 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -3.93 Total: -101.27 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.03 Total: -5.99 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 15.10 SS G_CDS: -1.32 Total: 13.78 kcal Total: -66.95 2.19 -64.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565402807.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.035 kcal (2) G-P(sol) polarization free energy of solvation -66.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds