Wall clock time and date at job start Tue Mar 31 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53777 * 113.69414 * 2 1 4 4 C 1.53779 * 87.08363 * 89.12629 * 3 2 1 5 5 C 1.50693 * 113.61629 * 139.98402 * 4 3 2 6 6 O 1.21285 * 120.00143 * 262.50211 * 5 4 3 7 7 N 1.34775 * 120.00377 * 82.50381 * 5 4 3 8 8 C 1.39264 * 120.00319 * 175.75289 * 7 5 4 9 9 C 1.39457 * 119.83840 * 34.72134 * 8 7 5 10 10 C 1.36377 * 120.17998 * 179.75788 * 9 8 7 11 11 C 1.40896 * 119.84797 * 0.54158 * 10 9 8 12 12 C 1.41153 * 120.15585 * 179.74162 * 11 10 9 13 13 H 1.07992 * 120.00135 * 34.74749 * 12 11 10 14 14 C 1.39902 * 119.99393 * 214.74629 * 12 11 10 15 15 N 1.30881 * 120.00199 * 355.60127 * 14 12 11 16 16 Si 1.86793 * 119.99823 * 175.59469 * 14 12 11 17 17 H 1.48500 * 109.47152 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47168 * 120.00253 * 16 14 12 19 19 H 1.48504 * 109.47433 * 240.00019 * 16 14 12 20 20 C 1.40840 * 119.68142 * 359.71547 * 11 10 9 21 21 C 1.36469 * 119.81882 * 359.97438 * 20 11 10 22 22 Cl 1.73604 * 119.92842 * 180.02562 * 21 20 11 23 23 C 1.53782 * 87.08117 * 25.43378 * 4 3 2 24 24 H 1.08994 * 109.47034 * 320.94156 * 1 2 3 25 25 H 1.09008 * 109.46684 * 80.93698 * 1 2 3 26 26 H 1.08997 * 109.47299 * 200.93325 * 1 2 3 27 27 H 1.08997 * 112.85120 * 228.72914 * 2 1 3 28 28 H 1.08998 * 113.61577 * 203.67738 * 3 2 1 29 29 H 1.09006 * 113.61439 * 334.57533 * 3 2 1 30 30 H 1.09005 * 113.61455 * 270.88742 * 4 3 2 31 31 H 0.97006 * 119.99968 * 355.75272 * 7 5 4 32 32 H 1.08000 * 119.91526 * 0.02562 * 9 8 7 33 33 H 1.08003 * 120.07949 * 180.25612 * 10 9 8 34 34 H 0.96995 * 119.99731 * 180.02562 * 15 14 12 35 35 H 1.08002 * 120.08914 * 180.02562 * 20 11 10 36 36 H 1.08998 * 113.61674 * 220.02272 * 23 4 3 37 37 H 1.08992 * 113.68975 * 89.12536 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1480 1.4081 0.0000 4 6 2.0951 1.3459 1.5356 5 6 3.3108 1.9321 2.2058 6 8 4.2086 1.2057 2.5763 7 7 3.4006 3.2637 2.3935 8 6 4.4815 3.7973 3.0910 9 6 5.7404 3.2083 2.9763 10 6 6.8047 3.7281 3.6523 11 6 6.6281 4.8564 4.4774 12 6 7.7241 5.3964 5.1843 13 1 8.7105 5.3811 4.7449 14 6 7.5323 5.9515 6.4540 15 7 6.3252 6.0485 6.9504 16 14 8.9992 6.5542 7.4411 17 1 10.2442 6.3338 6.6622 18 1 8.8433 8.0036 7.7246 19 1 9.0763 5.8050 8.7209 20 6 5.3530 5.4432 4.5930 21 6 4.2985 4.9160 3.9056 22 17 2.7257 5.6374 4.0454 23 6 2.1460 -0.1848 1.3969 24 1 -0.3633 0.7979 0.6475 25 1 -0.3633 0.1619 -1.0149 26 1 -0.3634 -0.9598 0.3671 27 1 1.9533 -0.6625 -0.7549 28 1 3.1610 1.4404 -0.4011 29 1 1.4974 2.1705 -0.4288 30 1 1.1595 1.7154 1.9556 31 1 2.7124 3.8505 2.0428 32 1 5.8738 2.3407 2.3470 33 1 7.7797 3.2730 3.5590 34 1 6.1923 6.4337 7.8306 35 1 5.2103 6.3085 5.2233 36 1 1.4939 -0.7085 2.0958 37 1 3.1579 -0.5893 1.3778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567073768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:58 Heat of formation + Delta-G solvation = -16.233299 kcal Electronic energy + Delta-G solvation = -20608.094388 eV Core-core repulsion = 17375.965996 eV Total energy + Delta-G solvation = -3232.128392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37153 -38.52868 -37.07493 -35.52161 -34.42707 -33.00143 -30.01655 -29.44994 -28.85954 -25.85687 -25.66339 -24.14863 -21.82563 -20.94483 -19.90146 -18.57601 -17.65202 -17.26359 -16.44842 -15.43339 -15.21041 -14.88175 -14.38152 -14.14359 -13.77101 -13.34119 -13.12684 -12.87654 -12.56654 -12.50074 -12.36713 -12.23174 -11.70017 -11.44110 -11.36488 -11.13189 -11.00499 -10.92772 -10.58619 -10.38739 -10.35004 -10.30989 -9.97525 -9.76288 -9.49102 -9.10870 -8.93747 -7.55682 -7.01261 -6.72641 -4.47366 2.36924 2.82954 2.97778 3.05994 3.10942 3.15444 3.24364 3.75485 3.91125 4.39235 4.48662 4.56501 4.66815 4.69634 5.20544 5.31268 5.39406 5.45640 5.56261 5.59028 5.72866 5.75776 5.90064 6.01743 6.14419 6.20228 6.36323 6.52888 6.67256 6.87595 7.01503 7.14540 7.31951 7.58182 7.66831 7.86857 8.09036 8.15580 8.42771 8.69092 8.78474 8.83042 10.17758 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.029912 B = 0.003717 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.869579 B = 7530.267356 C = 8163.570092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C -0.120 4.120 4 C -0.136 4.136 5 C 0.511 3.489 6 O -0.532 6.532 7 N -0.649 5.649 8 C 0.013 3.987 9 C -0.076 4.076 10 C -0.202 4.202 11 C 0.107 3.893 12 C -0.455 4.455 13 H 0.081 0.919 14 C 0.068 3.932 15 N -0.804 5.804 16 Si 0.918 3.082 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.273 1.273 20 C -0.136 4.136 21 C -0.023 4.023 22 Cl -0.120 7.120 23 C -0.112 4.112 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.398 0.602 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.281 0.719 35 H 0.144 0.856 36 H 0.070 0.930 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 -5.165 -9.496 14.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.136 4.136 3 C -0.158 4.158 4 C -0.157 4.157 5 C 0.298 3.702 6 O -0.408 6.408 7 N -0.292 5.292 8 C -0.081 4.081 9 C -0.096 4.096 10 C -0.222 4.222 11 C 0.104 3.896 12 C -0.486 4.486 13 H 0.099 0.901 14 C -0.148 4.148 15 N -0.431 5.431 16 Si 0.743 3.257 17 H -0.185 1.185 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.156 4.156 21 C -0.051 4.051 22 Cl -0.092 7.092 23 C -0.150 4.150 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.127 0.873 31 H 0.232 0.768 32 H 0.136 0.864 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.162 0.838 36 H 0.088 0.912 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.986 -5.551 -8.996 13.874 hybrid contribution 0.004 0.694 0.574 0.901 sum -8.982 -4.857 -8.422 13.236 Atomic orbital electron populations 1.21608 0.93870 1.01999 1.01752 1.22320 0.95751 0.97306 0.98178 1.22909 1.01852 0.97545 0.93472 1.22754 0.97487 0.98521 0.96950 1.20447 0.88293 0.82021 0.79475 1.90657 1.40175 1.59722 1.50287 1.42999 1.24717 1.06946 1.54579 1.16950 0.87544 0.99685 1.03900 1.20389 0.90326 0.99039 0.99827 1.20907 0.97659 0.98542 1.05074 1.17611 0.92466 0.89488 0.90010 1.19538 0.95498 1.33309 1.00213 0.90064 1.25937 0.97148 0.93352 0.98330 1.69748 1.21899 1.34226 1.17190 0.86091 0.81380 0.78726 0.79505 1.18470 1.19871 1.19868 1.21205 0.91373 1.02251 1.00807 1.20437 0.85127 0.97551 1.01952 1.98249 1.29728 1.83754 1.97438 1.22869 1.02383 0.93589 0.96135 0.92413 0.92475 0.92309 0.90347 0.89594 0.90772 0.87285 0.76767 0.86445 0.87898 0.90835 0.83835 0.91172 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.59 37.16 0.36 -0.67 16 2 C -0.12 -1.08 4.54 -89.81 -0.41 -1.49 16 3 C -0.12 -1.23 7.20 -25.92 -0.19 -1.42 16 4 C -0.14 -1.68 3.80 -90.96 -0.35 -2.03 16 5 C 0.51 8.90 7.19 -10.99 -0.08 8.82 16 6 O -0.53 -11.28 13.29 5.55 0.07 -11.21 16 7 N -0.65 -11.71 5.02 -9.71 -0.05 -11.75 16 8 C 0.01 0.29 6.32 -83.53 -0.53 -0.24 16 9 C -0.08 -1.76 8.61 -39.80 -0.34 -2.11 16 10 C -0.20 -4.92 9.74 -39.25 -0.38 -5.30 16 11 C 0.11 2.79 5.55 -106.80 -0.59 2.20 16 12 C -0.46 -11.73 9.02 -37.85 -0.34 -12.07 16 13 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 14 C 0.07 1.69 5.42 -17.33 -0.09 1.59 16 15 N -0.80 -20.49 10.60 55.55 0.59 -19.91 16 16 Si 0.92 18.52 29.56 -169.99 -5.03 13.49 16 17 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 20 C -0.14 -3.44 8.38 -39.24 -0.33 -3.77 16 21 C -0.02 -0.52 6.30 -39.72 -0.25 -0.77 16 22 Cl -0.12 -2.32 27.92 -51.86 -1.45 -3.77 16 23 C -0.11 -1.30 6.99 -25.91 -0.18 -1.48 16 24 H 0.06 0.44 7.34 -51.93 -0.38 0.06 16 25 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 29 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.11 1.18 7.64 -51.93 -0.40 0.78 16 31 H 0.40 6.10 8.05 -40.82 -0.33 5.78 16 32 H 0.12 2.68 6.18 -52.49 -0.32 2.36 16 33 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 34 H 0.28 6.54 8.30 -40.82 -0.34 6.21 16 35 H 0.14 3.80 6.13 -52.49 -0.32 3.48 16 36 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.10 1.28 7.44 -51.93 -0.39 0.89 16 LS Contribution 322.06 15.07 4.85 4.85 Total: -1.00 -28.19 322.06 -9.35 -37.53 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -4.64 Total: 9.50 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -3.70 Total: -18.74 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.54 Total: -31.66 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.07 Total: -11.21 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -1.45 Total: -3.77 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.19 -9.35 -37.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567073768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.301 kcal (2) G-P(sol) polarization free energy of solvation -28.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds