Wall clock time and date at job start Tue Mar 31 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53777 * 113.69414 * 2 1 4 4 C 1.53779 * 87.08363 * 89.12629 * 3 2 1 5 5 C 1.50693 * 113.61629 * 139.98402 * 4 3 2 6 6 O 1.21285 * 120.00143 * 262.50211 * 5 4 3 7 7 N 1.34775 * 120.00377 * 82.50381 * 5 4 3 8 8 C 1.39264 * 120.00319 * 175.75289 * 7 5 4 9 9 C 1.39457 * 119.83840 * 34.72134 * 8 7 5 10 10 C 1.36377 * 120.17998 * 179.75788 * 9 8 7 11 11 C 1.40896 * 119.84797 * 0.54158 * 10 9 8 12 12 C 1.41153 * 120.15585 * 179.74162 * 11 10 9 13 13 H 1.07992 * 120.00135 * 34.74749 * 12 11 10 14 14 C 1.39902 * 119.99393 * 214.74629 * 12 11 10 15 15 N 1.30881 * 120.00199 * 355.60127 * 14 12 11 16 16 Si 1.86793 * 119.99823 * 175.59469 * 14 12 11 17 17 H 1.48500 * 109.47152 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47168 * 120.00253 * 16 14 12 19 19 H 1.48504 * 109.47433 * 240.00019 * 16 14 12 20 20 C 1.40840 * 119.68142 * 359.71547 * 11 10 9 21 21 C 1.36469 * 119.81882 * 359.97438 * 20 11 10 22 22 Cl 1.73604 * 119.92842 * 180.02562 * 21 20 11 23 23 C 1.53782 * 87.08117 * 25.43378 * 4 3 2 24 24 H 1.08994 * 109.47034 * 320.94156 * 1 2 3 25 25 H 1.09008 * 109.46684 * 80.93698 * 1 2 3 26 26 H 1.08997 * 109.47299 * 200.93325 * 1 2 3 27 27 H 1.08997 * 112.85120 * 228.72914 * 2 1 3 28 28 H 1.08998 * 113.61577 * 203.67738 * 3 2 1 29 29 H 1.09006 * 113.61439 * 334.57533 * 3 2 1 30 30 H 1.09005 * 113.61455 * 270.88742 * 4 3 2 31 31 H 0.97006 * 119.99968 * 355.75272 * 7 5 4 32 32 H 1.08000 * 119.91526 * 0.02562 * 9 8 7 33 33 H 1.08003 * 120.07949 * 180.25612 * 10 9 8 34 34 H 0.96995 * 119.99731 * 180.02562 * 15 14 12 35 35 H 1.08002 * 120.08914 * 180.02562 * 20 11 10 36 36 H 1.08998 * 113.61674 * 220.02272 * 23 4 3 37 37 H 1.08992 * 113.68975 * 89.12536 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1480 1.4081 0.0000 4 6 2.0951 1.3459 1.5356 5 6 3.3108 1.9321 2.2058 6 8 4.2086 1.2057 2.5763 7 7 3.4006 3.2637 2.3935 8 6 4.4815 3.7973 3.0910 9 6 5.7404 3.2083 2.9763 10 6 6.8047 3.7281 3.6523 11 6 6.6281 4.8564 4.4774 12 6 7.7241 5.3964 5.1843 13 1 8.7105 5.3811 4.7449 14 6 7.5323 5.9515 6.4540 15 7 6.3252 6.0485 6.9504 16 14 8.9992 6.5542 7.4411 17 1 10.2442 6.3338 6.6622 18 1 8.8433 8.0036 7.7246 19 1 9.0763 5.8050 8.7209 20 6 5.3530 5.4432 4.5930 21 6 4.2985 4.9160 3.9056 22 17 2.7257 5.6374 4.0454 23 6 2.1460 -0.1848 1.3969 24 1 -0.3633 0.7979 0.6475 25 1 -0.3633 0.1619 -1.0149 26 1 -0.3634 -0.9598 0.3671 27 1 1.9533 -0.6625 -0.7549 28 1 3.1610 1.4404 -0.4011 29 1 1.4974 2.1705 -0.4288 30 1 1.1595 1.7154 1.9556 31 1 2.7124 3.8505 2.0428 32 1 5.8738 2.3407 2.3470 33 1 7.7797 3.2730 3.5590 34 1 6.1923 6.4337 7.8306 35 1 5.2103 6.3085 5.2233 36 1 1.4939 -0.7085 2.0958 37 1 3.1579 -0.5893 1.3778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567073768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:57 Heat of formation + Delta-G solvation = -30.364842 kcal Electronic energy + Delta-G solvation = -20608.707177 eV Core-core repulsion = 17375.965996 eV Total energy + Delta-G solvation = -3232.741182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.67117 -39.94538 -38.57721 -37.24822 -36.12551 -34.76512 -31.35276 -31.25575 -30.20235 -27.34207 -26.58002 -25.45334 -23.56147 -22.66977 -21.35781 -19.59656 -19.36607 -18.66976 -18.04407 -17.18485 -16.49504 -16.14767 -15.96658 -15.55758 -15.13854 -14.74676 -14.44176 -14.32672 -14.11278 -13.91102 -13.47580 -13.30216 -13.24185 -13.12775 -12.81333 -12.68360 -12.32432 -12.15085 -11.96088 -11.85499 -11.71865 -11.58202 -11.25968 -11.20411 -11.17153 -10.78882 -10.51125 -9.41952 -8.83796 -8.56156 -6.40826 0.58856 0.93212 1.36955 1.40671 1.43943 1.55651 1.73442 2.21865 2.32786 2.71663 3.49357 3.52635 3.63675 3.73609 3.81861 4.17553 4.34785 4.54725 4.64974 4.70971 4.75786 4.84312 4.90831 4.96170 4.98837 5.07164 5.15033 5.21416 5.26345 5.29255 5.38952 5.44429 5.59178 5.70922 5.84122 6.02160 6.20903 6.50390 6.63548 6.84392 6.88365 7.32581 8.36143 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.029912 B = 0.003717 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.869579 B = 7530.267356 C = 8163.570092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.102 4.102 3 C -0.115 4.115 4 C -0.132 4.132 5 C 0.508 3.492 6 O -0.573 6.573 7 N -0.645 5.645 8 C 0.024 3.976 9 C -0.084 4.084 10 C -0.212 4.212 11 C 0.079 3.921 12 C -0.488 4.488 13 H 0.081 0.919 14 C 0.028 3.972 15 N -0.836 5.836 16 Si 0.991 3.009 17 H -0.257 1.257 18 H -0.264 1.264 19 H -0.270 1.270 20 C -0.153 4.153 21 C -0.030 4.030 22 Cl -0.086 7.086 23 C -0.119 4.119 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.134 0.866 31 H 0.413 0.587 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.287 0.713 35 H 0.129 0.871 36 H 0.078 0.922 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.037 -5.312 -10.314 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 C -0.153 4.153 4 C -0.153 4.153 5 C 0.297 3.703 6 O -0.452 6.452 7 N -0.289 5.289 8 C -0.071 4.071 9 C -0.105 4.105 10 C -0.232 4.232 11 C 0.076 3.924 12 C -0.518 4.518 13 H 0.100 0.900 14 C -0.185 4.185 15 N -0.463 5.463 16 Si 0.812 3.188 17 H -0.181 1.181 18 H -0.189 1.189 19 H -0.195 1.195 20 C -0.174 4.174 21 C -0.058 4.058 22 Cl -0.058 7.058 23 C -0.157 4.157 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.116 0.884 30 H 0.152 0.848 31 H 0.250 0.750 32 H 0.138 0.862 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.146 0.854 36 H 0.096 0.904 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.720 -5.696 -9.849 15.632 hybrid contribution 0.394 0.667 0.747 1.076 sum -10.326 -5.029 -9.102 14.655 Atomic orbital electron populations 1.21625 0.92145 1.02530 1.02779 1.22278 0.96923 0.96435 0.96443 1.22928 1.01883 0.99112 0.91360 1.22923 0.95644 0.98666 0.98075 1.21440 0.89232 0.81237 0.78349 1.90640 1.42159 1.60518 1.51872 1.43033 1.23966 1.07718 1.54202 1.17040 0.88351 0.98799 1.02906 1.20502 0.90784 0.99181 0.99985 1.21058 0.98429 0.98485 1.05205 1.17912 0.93244 0.90354 0.90918 1.19776 0.95566 1.35050 1.01402 0.90043 1.26794 0.99968 0.92940 0.98797 1.69818 1.23755 1.34866 1.17826 0.85014 0.77734 0.78416 0.77673 1.18064 1.18871 1.19480 1.21114 0.92168 1.02377 1.01705 1.20466 0.86321 0.97763 1.01290 1.98245 1.26952 1.83236 1.97326 1.22901 1.01584 0.92914 0.98326 0.92058 0.91140 0.91751 0.89650 0.90883 0.88419 0.84796 0.74969 0.86211 0.87317 0.90229 0.85359 0.90355 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 9.59 71.98 0.69 -0.85 16 2 C -0.10 -1.59 4.54 -10.27 -0.05 -1.64 16 3 C -0.12 -2.05 7.20 31.12 0.22 -1.82 16 4 C -0.13 -2.98 3.80 -11.02 -0.04 -3.02 16 5 C 0.51 17.21 7.19 87.65 0.63 17.84 16 6 O -0.57 -24.45 13.29 -3.04 -0.04 -24.49 16 7 N -0.64 -22.48 5.02 -303.03 -1.52 -24.00 16 8 C 0.02 1.06 6.32 38.58 0.24 1.30 16 9 C -0.08 -4.00 8.61 22.13 0.19 -3.81 16 10 C -0.21 -10.66 9.74 22.49 0.22 -10.44 16 11 C 0.08 4.23 5.55 -21.28 -0.12 4.11 16 12 C -0.49 -25.92 9.02 23.39 0.21 -25.70 16 13 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 14 C 0.03 1.40 5.42 85.24 0.46 1.86 16 15 N -0.84 -43.45 10.60 21.82 0.23 -43.22 16 16 Si 0.99 38.20 29.56 68.60 2.03 40.22 16 17 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 18 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 19 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 20 C -0.15 -7.96 8.38 22.49 0.19 -7.77 16 21 C -0.03 -1.37 6.30 22.18 0.14 -1.23 16 22 Cl -0.09 -3.23 27.92 -2.72 -0.08 -3.30 16 23 C -0.12 -2.58 6.99 31.12 0.22 -2.36 16 24 H 0.06 0.68 7.34 -2.39 -0.02 0.66 16 25 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 29 H 0.10 1.31 8.10 -2.38 -0.02 1.29 16 30 H 0.13 2.40 7.64 -2.38 -0.02 2.39 16 31 H 0.41 11.79 8.05 -92.70 -0.75 11.04 16 32 H 0.12 5.58 6.18 -2.91 -0.02 5.57 16 33 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 34 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 35 H 0.13 7.02 6.13 -2.91 -0.02 7.00 16 36 H 0.08 1.54 8.10 -2.39 -0.02 1.52 16 37 H 0.07 1.90 7.44 -2.39 -0.02 1.88 16 Total: -1.00 -62.46 322.06 4.19 -58.28 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.35 Total: 30.06 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 3.21 Total: -33.54 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: -1.29 Total: -67.22 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.04 Total: -24.49 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.22 kcal Atomic # 17 Polarization: -3.23 SS G_CDS: -0.08 Total: -3.30 kcal Total: -62.46 4.19 -58.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567073768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.912 kcal (2) G-P(sol) polarization free energy of solvation -62.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds