Wall clock time and date at job start Tue Mar 31 2020 06:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32592 * 123.42793 * 2 1 4 4 S 1.75468 * 110.78461 * 180.23944 * 3 2 1 5 5 C 1.70443 * 92.52617 * 359.75826 * 4 3 2 6 6 N 1.38807 * 124.64856 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00339 * 359.94980 * 6 5 4 8 8 O 1.21592 * 119.99557 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00480 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00450 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47529 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47305 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47241 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99737 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00081 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99968 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00085 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47251 * 90.00241 * 17 15 13 19 19 H 1.48498 * 109.47188 * 210.00119 * 17 15 13 20 20 H 1.48499 * 109.47207 * 330.00044 * 17 15 13 21 21 C 1.36989 * 110.70375 * 359.97438 * 5 4 3 22 22 C 1.43205 * 123.58379 * 179.97438 * 21 5 4 23 23 N 3.57695 * 86.68867 * 179.81451 * 2 1 3 24 24 H 1.09003 * 109.46973 * 270.19692 * 1 2 3 25 25 H 1.09003 * 109.47197 * 30.19200 * 1 2 3 26 26 H 1.08999 * 109.47338 * 150.19148 * 1 2 3 27 27 H 1.07996 * 124.60664 * 359.97438 * 3 2 1 28 28 H 0.96998 * 120.00172 * 179.97438 * 6 5 4 29 29 H 0.97008 * 119.99939 * 0.02562 * 9 7 6 30 30 H 1.09003 * 109.46777 * 300.00191 * 10 9 7 31 31 H 1.08998 * 109.46544 * 59.99792 * 10 9 7 32 32 H 1.09003 * 109.46684 * 300.00099 * 11 10 9 33 33 H 1.08998 * 109.47004 * 59.99993 * 11 10 9 34 34 H 1.09008 * 109.47347 * 299.99938 * 12 11 10 35 35 H 1.09004 * 109.47566 * 59.99534 * 12 11 10 36 36 H 0.97003 * 120.00140 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2374 1.1066 0.0000 4 16 3.9495 0.7225 -0.0069 5 6 3.6501 -0.9554 -0.0025 6 7 4.6357 -1.9329 -0.0046 7 6 5.9361 -1.5788 -0.0114 8 8 6.2459 -0.4030 -0.0153 9 7 6.8930 -2.5278 -0.0139 10 6 8.3065 -2.1429 -0.0220 11 6 9.1776 -3.4007 -0.0240 12 6 10.6538 -2.9987 -0.0317 13 6 11.5118 -4.2376 -0.0330 14 1 11.0503 -5.2140 -0.0292 15 6 12.8859 -4.1245 -0.0402 16 7 13.4478 -2.9354 -0.0454 17 14 13.9495 -5.6601 -0.0426 18 1 14.2243 -6.0698 -1.4432 19 1 15.2316 -5.3753 0.6505 20 1 13.2381 -6.7560 0.6632 21 6 2.3036 -1.2071 0.0045 22 6 1.7441 -2.5253 0.0089 23 7 1.3004 -3.5710 0.0116 24 1 -0.3633 0.0035 1.0277 25 1 -0.3634 0.8883 -0.5168 26 1 -0.3634 -0.8917 -0.5108 27 1 1.8335 2.1082 -0.0004 28 1 4.3885 -2.8708 -0.0014 29 1 6.6457 -3.4659 -0.0112 30 1 8.5175 -1.5538 -0.9144 31 1 8.5264 -1.5496 0.8655 32 1 8.9666 -3.9902 0.8683 33 1 8.9575 -3.9937 -0.9116 34 1 10.8651 -2.4090 -0.9238 35 1 10.8736 -2.4058 0.8562 36 1 14.4146 -2.8558 -0.0508 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569936671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:06 Heat of formation + Delta-G solvation = 12.071964 kcal Electronic energy + Delta-G solvation = -19452.131276 eV Core-core repulsion = 16255.566750 eV Total energy + Delta-G solvation = -3196.564526 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.78528 -38.76072 -36.21311 -35.97638 -35.14455 -33.49877 -31.51025 -30.26845 -27.98771 -26.87052 -24.42704 -23.14627 -21.80334 -20.86488 -20.24341 -19.13489 -18.48347 -16.68925 -16.41219 -16.20316 -15.90378 -15.08755 -14.85646 -14.53504 -14.30612 -14.23846 -14.09515 -13.47892 -13.39686 -13.06720 -12.65287 -12.45479 -12.37336 -12.03541 -11.92961 -11.88930 -11.44934 -10.98890 -10.94111 -10.84646 -10.64306 -10.18771 -9.99331 -9.56285 -9.21014 -9.19787 -8.51425 -8.43295 -8.30312 -6.07984 -4.11403 0.53196 1.03273 1.69673 1.73598 2.23835 2.48447 2.76901 3.26982 3.27403 3.33787 3.36221 3.82751 3.94137 4.39393 4.52068 4.82275 5.15674 5.23275 5.28064 5.30532 5.44778 5.48485 5.61820 5.68555 5.98799 6.01648 6.05199 6.14303 6.30046 6.45299 6.68327 6.86963 7.31849 7.50570 7.55255 7.66447 7.89809 8.06522 8.30521 8.94953 9.53261 11.03188 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.035989 B = 0.002469 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.818733 B =11335.945231 C =12082.705826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.040 4.040 3 C -0.298 4.298 4 S 0.333 5.667 5 C 0.094 3.906 6 N -0.648 5.648 7 C 0.693 3.307 8 O -0.554 6.554 9 N -0.723 5.723 10 C 0.131 3.869 11 C -0.122 4.122 12 C 0.025 3.975 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.141 4.141 22 C 0.280 3.720 23 N -0.433 5.433 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.170 0.830 28 H 0.415 0.585 29 H 0.400 0.600 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.771 7.972 0.114 25.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.052 4.052 3 C -0.433 4.433 4 S 0.596 5.404 5 C -0.130 4.130 6 N -0.294 5.294 7 C 0.393 3.607 8 O -0.431 6.431 9 N -0.376 5.376 10 C 0.009 3.991 11 C -0.160 4.160 12 C -0.013 4.013 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.163 4.163 22 C -0.035 4.035 23 N -0.110 5.110 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.187 0.813 28 H 0.252 0.748 29 H 0.235 0.765 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.508 8.340 0.110 24.004 hybrid contribution -0.708 -2.408 -0.001 2.510 sum -23.216 5.931 0.109 23.962 Atomic orbital electron populations 1.20523 0.89446 1.02957 1.02688 1.19240 0.96342 0.89143 1.00447 1.25827 1.00536 1.02489 1.14460 1.84589 0.99146 0.89031 1.67670 1.21900 0.89917 0.98539 1.02606 1.42077 1.03699 1.08995 1.74584 1.16060 0.79823 0.86206 0.78650 1.90866 1.79465 1.15908 1.56858 1.45410 1.06786 1.08273 1.77125 1.21738 0.75407 0.99374 1.02607 1.21927 0.98277 0.94680 1.01116 1.19025 0.87333 0.97140 0.97790 1.21176 0.91165 0.92705 1.51205 0.92644 1.25026 0.98228 0.95987 0.95187 1.69958 1.10587 1.22257 1.50360 0.86573 0.79915 0.83246 0.78140 1.20628 1.21161 1.19903 1.15783 0.89152 0.87730 1.23586 1.24920 0.93800 0.91926 0.92840 1.81283 1.07324 1.11085 1.11355 0.90759 0.90724 0.91740 0.81278 0.74849 0.76540 0.91173 0.91161 0.92549 0.92551 0.96153 0.96141 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 9.95 36.00 0.36 -0.25 16 2 C -0.04 -0.33 6.00 -104.01 -0.62 -0.95 16 3 C -0.30 -2.24 10.89 28.83 0.31 -1.92 16 4 S 0.33 3.24 19.96 -107.50 -2.15 1.10 16 5 C 0.09 0.99 6.98 -14.84 -0.10 0.88 16 6 N -0.65 -6.75 5.37 -16.00 -0.09 -6.84 16 7 C 0.69 8.93 8.53 -86.93 -0.74 8.19 16 8 O -0.55 -8.58 13.77 5.28 0.07 -8.50 16 9 N -0.72 -8.93 5.56 -65.23 -0.36 -9.30 16 10 C 0.13 2.03 5.67 -4.04 -0.02 2.01 16 11 C -0.12 -2.19 5.27 -26.74 -0.14 -2.33 16 12 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 13 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 14 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 17 Si 0.89 21.08 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.14 -1.40 5.88 -105.90 -0.62 -2.03 16 22 C 0.28 3.12 14.23 -22.47 -0.32 2.80 16 23 N -0.43 -5.56 18.54 41.83 0.78 -4.79 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 26 H 0.06 0.45 7.68 -51.93 -0.40 0.05 16 27 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 28 H 0.41 3.50 8.16 -40.82 -0.33 3.16 16 29 H 0.40 3.89 8.49 -40.82 -0.35 3.54 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 333.84 15.07 5.03 5.03 Total: -1.00 -31.47 333.84 -7.88 -39.34 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.42 Total: -0.57 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.45 Total: -6.13 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 1.06 Total: -46.32 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.07 Total: -8.50 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.15 Total: 1.10 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.47 -7.88 -39.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569936671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.415 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds