Wall clock time and date at job start Tue Mar 31 2020 06:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32592 * 123.42793 * 2 1 4 4 S 1.75468 * 110.78461 * 180.23944 * 3 2 1 5 5 C 1.70443 * 92.52617 * 359.75826 * 4 3 2 6 6 N 1.38807 * 124.64856 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00339 * 359.94980 * 6 5 4 8 8 O 1.21592 * 119.99557 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00480 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00450 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47529 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47305 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47241 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99737 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00081 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99968 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00085 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47251 * 90.00241 * 17 15 13 19 19 H 1.48498 * 109.47188 * 210.00119 * 17 15 13 20 20 H 1.48499 * 109.47207 * 330.00044 * 17 15 13 21 21 C 1.36989 * 110.70375 * 359.97438 * 5 4 3 22 22 C 1.43205 * 123.58379 * 179.97438 * 21 5 4 23 23 N 3.57695 * 86.68867 * 179.81451 * 2 1 3 24 24 H 1.09003 * 109.46973 * 270.19692 * 1 2 3 25 25 H 1.09003 * 109.47197 * 30.19200 * 1 2 3 26 26 H 1.08999 * 109.47338 * 150.19148 * 1 2 3 27 27 H 1.07996 * 124.60664 * 359.97438 * 3 2 1 28 28 H 0.96998 * 120.00172 * 179.97438 * 6 5 4 29 29 H 0.97008 * 119.99939 * 0.02562 * 9 7 6 30 30 H 1.09003 * 109.46777 * 300.00191 * 10 9 7 31 31 H 1.08998 * 109.46544 * 59.99792 * 10 9 7 32 32 H 1.09003 * 109.46684 * 300.00099 * 11 10 9 33 33 H 1.08998 * 109.47004 * 59.99993 * 11 10 9 34 34 H 1.09008 * 109.47347 * 299.99938 * 12 11 10 35 35 H 1.09004 * 109.47566 * 59.99534 * 12 11 10 36 36 H 0.97003 * 120.00140 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2374 1.1066 0.0000 4 16 3.9495 0.7225 -0.0069 5 6 3.6501 -0.9554 -0.0025 6 7 4.6357 -1.9329 -0.0046 7 6 5.9361 -1.5788 -0.0114 8 8 6.2459 -0.4030 -0.0153 9 7 6.8930 -2.5278 -0.0139 10 6 8.3065 -2.1429 -0.0220 11 6 9.1776 -3.4007 -0.0240 12 6 10.6538 -2.9987 -0.0317 13 6 11.5118 -4.2376 -0.0330 14 1 11.0503 -5.2140 -0.0292 15 6 12.8859 -4.1245 -0.0402 16 7 13.4478 -2.9354 -0.0454 17 14 13.9495 -5.6601 -0.0426 18 1 14.2243 -6.0698 -1.4432 19 1 15.2316 -5.3753 0.6505 20 1 13.2381 -6.7560 0.6632 21 6 2.3036 -1.2071 0.0045 22 6 1.7441 -2.5253 0.0089 23 7 1.3004 -3.5710 0.0116 24 1 -0.3633 0.0035 1.0277 25 1 -0.3634 0.8883 -0.5168 26 1 -0.3634 -0.8917 -0.5108 27 1 1.8335 2.1082 -0.0004 28 1 4.3885 -2.8708 -0.0014 29 1 6.6457 -3.4659 -0.0112 30 1 8.5175 -1.5538 -0.9144 31 1 8.5264 -1.5496 0.8655 32 1 8.9666 -3.9902 0.8683 33 1 8.9575 -3.9937 -0.9116 34 1 10.8651 -2.4090 -0.9238 35 1 10.8736 -2.4058 0.8562 36 1 14.4146 -2.8558 -0.0508 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569936671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:06 Heat of formation + Delta-G solvation = -7.878674 kcal Electronic energy + Delta-G solvation = -19452.996401 eV Core-core repulsion = 16255.566750 eV Total energy + Delta-G solvation = -3197.429651 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.76973 -39.56895 -37.31085 -37.03650 -36.09657 -35.28567 -33.13186 -31.12644 -28.75518 -28.39766 -25.61821 -24.49773 -22.82357 -22.34811 -21.09492 -20.10969 -19.39101 -18.48464 -17.42912 -17.24600 -16.95589 -16.47367 -15.99968 -15.94925 -15.49300 -15.29694 -14.75171 -14.30646 -14.28696 -14.08413 -13.83069 -13.76698 -13.76371 -13.23694 -13.10761 -12.75912 -12.65527 -12.58642 -12.40555 -12.32852 -11.73387 -11.68479 -11.49809 -11.21111 -11.00548 -10.54661 -10.31801 -9.28571 -9.06547 -8.19500 -6.30198 -0.27452 0.28407 0.94876 1.02281 1.35580 1.42220 1.42516 1.53416 1.62788 1.76467 2.41520 2.42339 2.90160 3.08118 3.14643 3.83668 4.09634 4.20886 4.22735 4.54588 4.55859 4.66508 4.82617 4.87084 4.89278 4.95354 5.06921 5.15573 5.28546 5.40231 5.41420 5.50974 5.54873 5.72378 5.85455 6.23060 6.44202 6.57535 6.87440 7.08042 7.39252 8.92314 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.035989 B = 0.002469 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.818733 B =11335.945231 C =12082.705826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.049 4.049 3 C -0.274 4.274 4 S 0.310 5.690 5 C 0.077 3.923 6 N -0.639 5.639 7 C 0.695 3.305 8 O -0.582 6.582 9 N -0.715 5.715 10 C 0.147 3.853 11 C -0.104 4.104 12 C 0.024 3.976 13 C -0.541 4.541 14 H 0.064 0.936 15 C -0.002 4.002 16 N -0.933 5.933 17 Si 0.964 3.036 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.262 1.262 21 C -0.139 4.139 22 C 0.297 3.703 23 N -0.464 5.464 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.200 0.800 28 H 0.424 0.576 29 H 0.415 0.585 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.067 0.933 34 H -0.005 1.005 35 H -0.004 1.004 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.420 7.495 0.129 26.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.061 4.061 3 C -0.409 4.409 4 S 0.573 5.427 5 C -0.146 4.146 6 N -0.285 5.285 7 C 0.394 3.606 8 O -0.461 6.461 9 N -0.369 5.369 10 C 0.024 3.976 11 C -0.142 4.142 12 C -0.014 4.014 13 C -0.579 4.579 14 H 0.083 0.917 15 C -0.200 4.200 16 N -0.573 5.573 17 Si 0.788 3.212 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.186 1.186 21 C -0.161 4.161 22 C -0.018 4.018 23 N -0.142 5.142 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.074 0.926 27 H 0.217 0.783 28 H 0.262 0.738 29 H 0.252 0.748 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.014 0.986 35 H 0.014 0.986 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.209 7.831 0.124 25.444 hybrid contribution -0.277 -2.172 -0.005 2.190 sum -24.486 5.659 0.119 25.132 Atomic orbital electron populations 1.20586 0.87812 1.03625 1.03461 1.19495 0.97441 0.88490 1.00655 1.26050 0.98642 1.03671 1.12583 1.84707 1.01369 0.88956 1.67664 1.22023 0.89972 0.98771 1.03863 1.41828 1.02829 1.09594 1.74224 1.16045 0.80461 0.85688 0.78376 1.90862 1.80235 1.17057 1.57921 1.45042 1.05470 1.09137 1.77224 1.21274 0.76845 0.97789 1.01716 1.21614 0.94620 0.95771 1.02176 1.18932 0.91306 0.95746 0.95388 1.21678 0.91906 0.93915 1.50388 0.91748 1.25974 0.99947 0.99167 0.94902 1.70096 1.10921 1.24622 1.51666 0.85467 0.77868 0.79422 0.78403 1.19918 1.21069 1.18638 1.15988 0.89156 0.87789 1.23172 1.25040 0.92976 0.91834 0.91958 1.81297 1.08435 1.11988 1.12520 0.89911 0.88573 0.92587 0.78288 0.73757 0.74787 0.92187 0.92177 0.91423 0.91402 0.98617 0.98604 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 9.95 71.24 0.71 -0.25 16 2 C -0.05 -0.71 6.00 -19.39 -0.12 -0.82 16 3 C -0.27 -3.41 10.89 66.66 0.73 -2.68 16 4 S 0.31 5.70 19.96 -56.49 -1.13 4.57 16 5 C 0.08 1.53 6.98 83.29 0.58 2.11 16 6 N -0.64 -12.69 5.37 -322.79 -1.73 -14.43 16 7 C 0.69 17.43 8.53 179.06 1.53 18.96 16 8 O -0.58 -17.94 13.77 -4.01 -0.06 -17.99 16 9 N -0.71 -16.93 5.56 -478.54 -2.66 -19.59 16 10 C 0.15 4.55 5.67 86.38 0.49 5.04 16 11 C -0.10 -3.67 5.27 30.59 0.16 -3.51 16 12 C 0.02 1.19 4.97 29.85 0.15 1.33 16 13 C -0.54 -29.30 9.11 25.60 0.23 -29.07 16 14 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 15 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 16 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 17 Si 0.96 43.09 29.54 68.60 2.03 45.11 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 21 C -0.14 -2.56 5.88 -20.70 -0.12 -2.68 16 22 C 0.30 6.28 14.23 88.33 1.26 7.54 16 23 N -0.46 -11.56 18.54 19.00 0.35 -11.21 16 24 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.10 0.55 8.13 -2.39 -0.02 0.53 16 26 H 0.06 0.67 7.68 -2.39 -0.02 0.65 16 27 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 28 H 0.42 6.65 8.16 -92.71 -0.76 5.90 16 29 H 0.42 7.33 8.49 -92.70 -0.79 6.55 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 35 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 36 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -68.12 333.84 2.73 -65.39 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -0.41 Total: 7.23 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 6.06 Total: -3.69 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -3.76 Total: -100.63 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.06 Total: -17.99 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -1.13 Total: 4.57 kcal Total: -68.12 2.73 -65.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569936671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.514 kcal (2) G-P(sol) polarization free energy of solvation -68.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds