Wall clock time and date at job start Tue Mar 31 2020 07:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47449 * 2 1 4 4 H 1.09002 * 109.47286 * 305.85080 * 3 2 1 5 5 C 1.50699 * 109.47454 * 185.84593 * 3 2 1 6 6 H 1.08008 * 119.99953 * 243.40715 * 5 3 2 7 7 C 1.37875 * 119.99760 * 63.40538 * 5 3 2 8 8 N 1.31519 * 119.99657 * 196.04065 * 7 5 3 9 9 Si 1.86794 * 120.00123 * 16.04565 * 7 5 3 10 10 H 1.48506 * 109.47237 * 92.74533 * 9 7 5 11 11 H 1.48503 * 109.47165 * 212.74250 * 9 7 5 12 12 H 1.48497 * 109.47360 * 332.74275 * 9 7 5 13 13 N 1.46907 * 109.46978 * 65.84458 * 3 2 1 14 14 C 1.46899 * 111.00151 * 258.59127 * 13 3 2 15 15 C 1.50700 * 109.47011 * 175.30857 * 14 13 3 16 16 N 1.30926 * 126.40501 * 90.29644 * 15 14 13 17 17 C 1.35394 * 105.57804 * 180.08256 * 16 15 14 18 18 C 1.47733 * 126.44841 * 179.90241 * 17 16 15 19 19 C 1.34857 * 125.26980 * 179.72958 * 18 17 16 20 20 C 1.37820 * 114.72160 * 179.97438 * 19 18 17 21 21 C 1.33717 * 115.07080 * 0.02562 * 20 19 18 22 22 S 1.75862 * 109.75091 * 359.97438 * 21 20 19 23 23 N 1.31037 * 107.10073 * 359.64026 * 17 16 15 24 24 O 1.21292 * 110.04246 * 0.22579 * 23 17 16 25 25 H 1.08994 * 109.47641 * 175.84594 * 1 2 3 26 26 H 1.08995 * 109.47491 * 295.85249 * 1 2 3 27 27 H 1.09004 * 109.46591 * 55.84736 * 1 2 3 28 28 H 1.08998 * 109.47396 * 240.00119 * 2 1 3 29 29 H 1.08995 * 109.46982 * 120.00223 * 2 1 3 30 30 H 0.97005 * 119.99905 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99720 * 134.63418 * 13 3 2 32 32 H 1.08992 * 109.47122 * 55.30665 * 14 13 3 33 33 H 1.08998 * 109.47105 * 295.30689 * 14 13 3 34 34 H 1.08002 * 122.63834 * 359.97438 * 19 18 17 35 35 H 1.08001 * 122.46181 * 179.97438 * 20 19 18 36 36 H 1.08005 * 125.12698 * 180.26617 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9857 -0.8330 5 6 3.5401 1.4449 -0.1447 6 1 4.1586 1.8359 0.6497 7 6 4.1228 0.9481 -1.2912 8 7 5.4048 0.6549 -1.3033 9 14 3.0915 0.6915 -2.8274 10 1 3.1665 1.9036 -3.6821 11 1 3.6091 -0.4785 -3.5814 12 1 1.6792 0.4454 -2.4401 13 7 1.6689 2.0931 1.2638 14 6 0.4997 2.9639 1.0841 15 6 0.0791 3.5221 2.4192 16 7 0.4959 4.6390 2.9606 17 6 -0.1453 4.7280 4.1498 18 6 -0.0098 5.8153 5.1407 19 6 -0.6650 5.8825 6.3175 20 6 -0.3738 6.9954 7.0766 21 6 0.5112 7.8370 6.5320 22 16 1.0315 7.2225 4.9686 23 7 -0.9129 3.6711 4.2538 24 8 -0.7938 2.9724 3.2695 25 1 -0.3634 -1.0249 -0.0744 26 1 -0.3634 0.4481 0.9248 27 1 -0.3633 0.5770 -0.8505 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 5.8148 0.3049 -2.1098 31 1 2.4474 2.6075 1.6478 32 1 -0.3206 2.3873 0.6567 33 1 0.7565 3.7831 0.4125 34 1 -1.3630 5.1240 6.6397 35 1 -0.8277 7.1749 8.0400 36 1 0.8581 8.7534 6.9862 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571057493.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:50 Heat of formation + Delta-G solvation = 106.752068 kcal Electronic energy + Delta-G solvation = -20303.046129 eV Core-core repulsion = 17110.587240 eV Total energy + Delta-G solvation = -3192.458889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.43663 -38.12877 -37.01919 -35.70316 -33.57083 -32.15848 -31.17249 -29.65992 -28.06269 -25.40160 -25.18434 -23.43341 -22.55018 -21.88296 -19.87402 -19.14862 -18.52449 -17.98764 -17.12310 -16.56663 -15.85153 -15.50524 -14.74176 -14.32761 -14.08382 -13.75112 -13.59049 -13.06703 -12.96367 -12.86097 -12.58260 -12.49505 -12.18190 -11.85297 -11.71708 -11.62096 -11.18233 -10.93344 -10.89009 -10.88061 -10.46622 -10.27256 -9.94101 -9.47806 -9.26530 -8.78937 -8.74971 -8.53449 -7.79878 -6.21601 -4.18540 0.28831 1.22045 1.30054 1.71418 2.11074 2.77012 2.89077 3.21699 3.31983 3.33744 3.42139 4.10733 4.32474 4.74247 4.84602 5.00199 5.13336 5.15918 5.26934 5.41322 5.52751 5.69317 5.79737 5.88708 5.98160 5.99221 6.03662 6.10036 6.16527 6.50751 6.67585 6.88686 6.90334 7.31458 7.48214 7.72192 8.06576 8.16917 8.43134 8.85416 9.42470 10.90957 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026373 B = 0.003341 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.429875 B = 8378.860964 C = 9094.059830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C 0.196 3.804 4 H 0.011 0.989 5 C -0.540 4.540 6 H 0.077 0.923 7 C 0.081 3.919 8 N -0.885 5.885 9 Si 0.863 3.137 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.249 1.249 13 N -0.674 5.674 14 C 0.140 3.860 15 C 0.217 3.783 16 N -0.479 5.479 17 C 0.232 3.768 18 C -0.125 4.125 19 C -0.097 4.097 20 C -0.139 4.139 21 C -0.215 4.215 22 S 0.190 5.810 23 N -0.374 5.374 24 O 0.089 5.911 25 H 0.038 0.962 26 H 0.055 0.945 27 H 0.039 0.961 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.265 0.735 31 H 0.350 0.650 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.758 11.300 11.332 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C 0.088 3.912 4 H 0.028 0.972 5 C -0.578 4.578 6 H 0.095 0.905 7 C -0.123 4.123 8 N -0.521 5.521 9 Si 0.690 3.310 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.173 1.173 13 N -0.308 5.308 14 C 0.008 3.992 15 C -0.004 4.004 16 N -0.213 5.213 17 C -0.039 4.039 18 C -0.244 4.244 19 C -0.132 4.132 20 C -0.169 4.169 21 C -0.353 4.353 22 S 0.455 5.545 23 N -0.081 5.081 24 O 0.028 5.972 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.169 0.831 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.227 11.422 11.004 20.026 hybrid contribution -0.875 -0.068 -0.340 0.941 sum -13.102 11.354 10.665 20.355 Atomic orbital electron populations 1.21918 0.98504 1.00010 1.00602 1.21887 0.92794 0.98978 1.01256 1.19506 0.95987 0.90842 0.84854 0.97165 1.21148 0.89067 1.43227 1.04309 0.90469 1.24883 0.94806 0.93857 0.98779 1.69986 1.11726 1.41923 1.28495 0.87198 0.82316 0.77978 0.83543 1.20696 1.21203 1.17278 1.60633 1.07304 1.31986 1.30865 1.20709 0.97807 0.97156 0.83483 1.28983 0.87637 0.87460 0.96300 1.72104 1.24698 1.18129 1.06376 1.22672 0.94599 0.94166 0.92469 1.21316 1.07236 0.98629 0.97221 1.20339 1.00755 0.99483 0.92603 1.20013 1.00469 0.94479 1.01977 1.26061 1.04134 1.05166 0.99898 1.84577 1.40907 1.12871 1.16126 1.74987 1.22037 1.05100 1.05976 1.85290 1.48988 1.41752 1.21123 0.94265 0.92591 0.94154 0.92798 0.91969 0.92475 0.83101 0.87479 0.90507 0.83583 0.83642 0.81205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.74 37.16 0.32 -2.22 16 2 C -0.11 -2.26 4.85 -26.73 -0.13 -2.39 16 3 C 0.20 4.21 1.75 -68.86 -0.12 4.09 16 4 H 0.01 0.23 6.35 -51.93 -0.33 -0.10 16 5 C -0.54 -14.16 9.03 -34.44 -0.31 -14.47 16 6 H 0.08 2.21 7.67 -52.48 -0.40 1.81 16 7 C 0.08 2.20 5.31 -17.82 -0.09 2.11 16 8 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 9 Si 0.86 19.97 25.76 -169.99 -4.38 15.59 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.25 -5.31 5.49 56.52 0.31 -5.00 16 13 N -0.67 -12.64 6.07 -109.22 -0.66 -13.30 16 14 C 0.14 2.14 5.65 -4.98 -0.03 2.11 16 15 C 0.22 3.42 8.04 -12.98 -0.10 3.32 16 16 N -0.48 -7.95 11.58 -9.88 -0.11 -8.07 16 17 C 0.23 3.69 8.02 -156.04 -1.25 2.43 16 18 C -0.12 -1.68 6.44 -36.90 -0.24 -1.92 16 19 C -0.10 -1.09 10.05 -40.93 -0.41 -1.50 16 20 C -0.14 -1.22 10.16 -41.32 -0.42 -1.64 16 21 C -0.22 -1.82 11.23 29.15 0.33 -1.49 16 22 S 0.19 2.13 23.32 -107.50 -2.51 -0.38 16 23 N -0.37 -6.04 12.16 30.99 0.38 -5.66 16 24 O 0.09 1.42 11.29 18.00 0.20 1.62 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.87 6.65 -51.93 -0.35 0.53 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 1.16 4.88 -51.93 -0.25 0.91 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 31 H 0.35 6.92 7.96 -39.29 -0.31 6.61 16 32 H 0.11 1.46 6.01 -51.93 -0.31 1.15 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 317.70 15.07 4.79 4.79 Total: -1.00 -29.47 317.70 -8.12 -37.59 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.14 Total: 4.52 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -2.46 Total: -11.56 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.37 Total: -52.16 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.20 Total: 1.62 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.38 Total: 15.59 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.51 Total: -0.38 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.47 -8.12 -37.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571057493.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.340 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds