Wall clock time and date at job start Tue Mar 31 2020 07:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47449 * 2 1 4 4 H 1.09002 * 109.47286 * 305.85080 * 3 2 1 5 5 C 1.50699 * 109.47454 * 185.84593 * 3 2 1 6 6 H 1.08008 * 119.99953 * 243.40715 * 5 3 2 7 7 C 1.37875 * 119.99760 * 63.40538 * 5 3 2 8 8 N 1.31519 * 119.99657 * 196.04065 * 7 5 3 9 9 Si 1.86794 * 120.00123 * 16.04565 * 7 5 3 10 10 H 1.48506 * 109.47237 * 92.74533 * 9 7 5 11 11 H 1.48503 * 109.47165 * 212.74250 * 9 7 5 12 12 H 1.48497 * 109.47360 * 332.74275 * 9 7 5 13 13 N 1.46907 * 109.46978 * 65.84458 * 3 2 1 14 14 C 1.46899 * 111.00151 * 258.59127 * 13 3 2 15 15 C 1.50700 * 109.47011 * 175.30857 * 14 13 3 16 16 N 1.30926 * 126.40501 * 90.29644 * 15 14 13 17 17 C 1.35394 * 105.57804 * 180.08256 * 16 15 14 18 18 C 1.47733 * 126.44841 * 179.90241 * 17 16 15 19 19 C 1.34857 * 125.26980 * 179.72958 * 18 17 16 20 20 C 1.37820 * 114.72160 * 179.97438 * 19 18 17 21 21 C 1.33717 * 115.07080 * 0.02562 * 20 19 18 22 22 S 1.75862 * 109.75091 * 359.97438 * 21 20 19 23 23 N 1.31037 * 107.10073 * 359.64026 * 17 16 15 24 24 O 1.21292 * 110.04246 * 0.22579 * 23 17 16 25 25 H 1.08994 * 109.47641 * 175.84594 * 1 2 3 26 26 H 1.08995 * 109.47491 * 295.85249 * 1 2 3 27 27 H 1.09004 * 109.46591 * 55.84736 * 1 2 3 28 28 H 1.08998 * 109.47396 * 240.00119 * 2 1 3 29 29 H 1.08995 * 109.46982 * 120.00223 * 2 1 3 30 30 H 0.97005 * 119.99905 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99720 * 134.63418 * 13 3 2 32 32 H 1.08992 * 109.47122 * 55.30665 * 14 13 3 33 33 H 1.08998 * 109.47105 * 295.30689 * 14 13 3 34 34 H 1.08002 * 122.63834 * 359.97438 * 19 18 17 35 35 H 1.08001 * 122.46181 * 179.97438 * 20 19 18 36 36 H 1.08005 * 125.12698 * 180.26617 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9857 -0.8330 5 6 3.5401 1.4449 -0.1447 6 1 4.1586 1.8359 0.6497 7 6 4.1228 0.9481 -1.2912 8 7 5.4048 0.6549 -1.3033 9 14 3.0915 0.6915 -2.8274 10 1 3.1665 1.9036 -3.6821 11 1 3.6091 -0.4785 -3.5814 12 1 1.6792 0.4454 -2.4401 13 7 1.6689 2.0931 1.2638 14 6 0.4997 2.9639 1.0841 15 6 0.0791 3.5221 2.4192 16 7 0.4959 4.6390 2.9606 17 6 -0.1453 4.7280 4.1498 18 6 -0.0098 5.8153 5.1407 19 6 -0.6650 5.8825 6.3175 20 6 -0.3738 6.9954 7.0766 21 6 0.5112 7.8370 6.5320 22 16 1.0315 7.2225 4.9686 23 7 -0.9129 3.6711 4.2538 24 8 -0.7938 2.9724 3.2695 25 1 -0.3634 -1.0249 -0.0744 26 1 -0.3634 0.4481 0.9248 27 1 -0.3633 0.5770 -0.8505 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 5.8148 0.3049 -2.1098 31 1 2.4474 2.6075 1.6478 32 1 -0.3206 2.3873 0.6567 33 1 0.7565 3.7831 0.4125 34 1 -1.3630 5.1240 6.6397 35 1 -0.8277 7.1749 8.0400 36 1 0.8581 8.7534 6.9862 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571057493.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:49 Heat of formation + Delta-G solvation = 85.475917 kcal Electronic energy + Delta-G solvation = -20303.968732 eV Core-core repulsion = 17110.587240 eV Total energy + Delta-G solvation = -3193.381492 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.64123 -38.94698 -38.56812 -36.90889 -35.05858 -33.96117 -32.54745 -30.61201 -29.65689 -26.88355 -26.18900 -24.63290 -24.11083 -22.97121 -21.50684 -20.05121 -19.64281 -19.22635 -18.87279 -17.71957 -17.21573 -16.69029 -16.07097 -15.84620 -15.62118 -14.85934 -14.75514 -14.47811 -14.18319 -14.07382 -13.72256 -13.69331 -13.40600 -13.28281 -13.01120 -12.92680 -12.66714 -12.58704 -12.32675 -12.00857 -11.78638 -11.66491 -11.49348 -11.17800 -11.08645 -10.58515 -9.68370 -9.58074 -9.32655 -8.31008 -6.32065 -0.62914 0.12736 0.37519 0.94349 1.13376 1.39366 1.43303 1.52883 1.67003 1.83855 2.34198 2.37689 2.95070 3.03700 3.49884 3.80197 4.10608 4.18080 4.31997 4.40047 4.50465 4.51849 4.58110 4.59403 4.66763 4.78013 4.91821 5.00127 5.19245 5.27213 5.30672 5.36083 5.41487 5.56235 5.81450 5.93940 6.32216 6.52919 6.77590 6.96270 7.32939 8.85466 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026373 B = 0.003341 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.429875 B = 8378.860964 C = 9094.059830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.203 3.797 4 H 0.024 0.976 5 C -0.543 4.543 6 H 0.034 0.966 7 C 0.022 3.978 8 N -0.940 5.940 9 Si 0.928 3.072 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.214 1.214 13 N -0.677 5.677 14 C 0.144 3.856 15 C 0.219 3.781 16 N -0.498 5.498 17 C 0.230 3.770 18 C -0.172 4.172 19 C -0.083 4.083 20 C -0.145 4.145 21 C -0.185 4.185 22 S 0.160 5.840 23 N -0.388 5.388 24 O 0.085 5.915 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.266 0.734 31 H 0.340 0.660 32 H 0.132 0.868 33 H 0.087 0.913 34 H 0.150 0.850 35 H 0.181 0.819 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.454 12.376 11.842 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C 0.094 3.906 4 H 0.041 0.959 5 C -0.581 4.581 6 H 0.052 0.948 7 C -0.177 4.177 8 N -0.579 5.579 9 Si 0.751 3.249 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.137 1.137 13 N -0.310 5.310 14 C 0.013 3.987 15 C -0.003 4.003 16 N -0.232 5.232 17 C -0.040 4.040 18 C -0.291 4.291 19 C -0.119 4.119 20 C -0.174 4.174 21 C -0.322 4.322 22 S 0.425 5.575 23 N -0.097 5.097 24 O 0.027 5.973 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.105 0.895 34 H 0.167 0.833 35 H 0.198 0.802 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -14.962 12.494 11.523 22.643 hybrid contribution 0.022 -0.284 -0.285 0.403 sum -14.940 12.210 11.238 22.329 Atomic orbital electron populations 1.21842 0.94950 1.01685 1.01844 1.21809 0.95932 0.97412 0.99925 1.19362 0.92672 0.92240 0.86336 0.95873 1.21488 0.91706 1.41943 1.02983 0.94794 1.25800 0.95900 0.93718 1.02313 1.70136 1.14099 1.44131 1.29496 0.86157 0.82283 0.77630 0.78782 1.20363 1.21659 1.13659 1.60552 1.07921 1.33014 1.29510 1.20786 0.96974 0.97334 0.83566 1.28969 0.87615 0.87377 0.96293 1.72104 1.25242 1.18747 1.07102 1.23119 0.93797 0.94509 0.92552 1.21495 1.09989 0.99452 0.98167 1.20648 0.99452 1.00025 0.91809 1.20333 1.00616 0.93429 1.03041 1.26507 1.02430 1.05675 0.97632 1.84641 1.41344 1.12741 1.18804 1.74951 1.22905 1.05560 1.06236 1.85258 1.49104 1.41793 1.21154 0.92532 0.91629 0.92575 0.93943 0.93700 0.92520 0.84237 0.85023 0.89520 0.83273 0.80227 0.77623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 8.74 71.98 0.63 -3.69 16 2 C -0.11 -4.40 4.85 30.59 0.15 -4.25 16 3 C 0.20 8.51 1.75 44.17 0.08 8.59 16 4 H 0.02 0.94 6.35 -2.39 -0.02 0.92 16 5 C -0.54 -29.27 9.03 25.60 0.23 -29.04 16 6 H 0.03 2.06 7.67 -2.91 -0.02 2.04 16 7 C 0.02 1.20 5.31 84.65 0.45 1.65 16 8 N -0.94 -57.09 13.96 21.45 0.30 -56.79 16 9 Si 0.93 40.83 25.76 68.60 1.77 42.59 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.21 -8.17 5.49 99.48 0.55 -7.63 16 13 N -0.68 -25.15 6.07 -499.46 -3.03 -28.19 16 14 C 0.14 4.19 5.65 85.56 0.48 4.68 16 15 C 0.22 6.77 8.04 88.35 0.71 7.48 16 16 N -0.50 -16.60 11.58 -302.28 -3.50 -20.10 16 17 C 0.23 7.36 8.02 136.96 1.10 8.46 16 18 C -0.17 -4.56 6.44 24.00 0.15 -4.41 16 19 C -0.08 -1.74 10.05 21.39 0.22 -1.52 16 20 C -0.15 -2.08 10.16 21.14 0.21 -1.86 16 21 C -0.19 -2.54 11.23 66.79 0.75 -1.79 16 22 S 0.16 3.46 23.32 -56.49 -1.32 2.14 16 23 N -0.39 -12.46 12.16 -58.78 -0.72 -13.17 16 24 O 0.09 2.67 11.29 74.48 0.84 3.51 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 1.82 6.65 -2.39 -0.02 1.80 16 27 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.04 1.74 4.88 -2.39 -0.01 1.73 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 31 H 0.34 13.85 7.96 -89.69 -0.71 13.13 16 32 H 0.13 3.19 6.01 -2.39 -0.01 3.17 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 34 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 36 H 0.21 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -66.77 317.70 -0.25 -67.01 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.25 Total: 18.71 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 5.16 Total: -15.72 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -6.95 Total: -118.25 kcal Atomic # 8 Polarization: 2.67 SS G_CDS: 0.84 Total: 3.51 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.77 Total: 42.59 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.32 Total: 2.14 kcal Total: -66.77 -0.25 -67.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571057493.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.489 kcal (2) G-P(sol) polarization free energy of solvation -66.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds