Wall clock time and date at job start Tue Mar 31 2020 07:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46909 * 2 1 4 4 H 1.08994 * 109.47434 * 54.51790 * 3 2 1 5 5 C 1.50699 * 109.46805 * 174.51590 * 3 2 1 6 6 H 1.08001 * 120.00172 * 119.99948 * 5 3 2 7 7 C 1.37881 * 120.00056 * 300.00063 * 5 3 2 8 8 N 1.31513 * 119.99859 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00083 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47237 * 89.99871 * 9 7 5 11 11 H 1.48500 * 109.47350 * 209.99779 * 9 7 5 12 12 H 1.48499 * 109.47239 * 330.00033 * 9 7 5 13 13 N 1.46898 * 109.47453 * 294.51346 * 3 2 1 14 14 C 1.46894 * 111.00143 * 154.42677 * 13 3 2 15 15 C 1.50699 * 109.47319 * 174.78043 * 14 13 3 16 16 N 1.30936 * 126.39750 * 89.71666 * 15 14 13 17 17 C 1.35396 * 105.57517 * 179.86448 * 16 15 14 18 18 C 1.47729 * 126.44654 * 180.15158 * 17 16 15 19 19 C 1.34857 * 125.27055 * 179.97438 * 18 17 16 20 20 C 1.37823 * 114.72396 * 179.78574 * 19 18 17 21 21 C 1.33716 * 115.07330 * 0.50558 * 20 19 18 22 22 S 1.75868 * 109.74400 * 359.72394 * 21 20 19 23 23 N 1.31040 * 107.10122 * 0.40032 * 17 16 15 24 24 O 1.21285 * 110.04292 * 359.75056 * 23 17 16 25 25 H 1.09004 * 109.47241 * 185.98018 * 1 2 3 26 26 H 1.09003 * 109.47066 * 305.97791 * 1 2 3 27 27 H 1.08998 * 109.47505 * 65.97418 * 1 2 3 28 28 H 1.09002 * 109.46673 * 240.00273 * 2 1 3 29 29 H 1.08993 * 109.47242 * 120.00385 * 2 1 3 30 30 H 0.97000 * 119.99898 * 179.97438 * 8 7 5 31 31 H 1.00899 * 110.99836 * 30.47399 * 13 3 2 32 32 H 1.08995 * 109.47910 * 294.78773 * 14 13 3 33 33 H 1.09004 * 109.46840 * 54.78649 * 14 13 3 34 34 H 1.08002 * 122.64020 * 359.97438 * 19 18 17 35 35 H 1.08001 * 122.46381 * 180.22652 * 20 19 18 36 36 H 1.08000 * 125.13469 * 179.72842 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5987 1.9839 0.8368 5 6 3.5408 1.4447 0.1358 6 1 4.1523 1.8870 -0.6367 7 6 4.1333 0.8818 1.2463 8 7 3.3887 0.3436 2.1872 9 14 5.9937 0.8851 1.4149 10 1 6.4248 2.1201 2.1181 11 1 6.4221 -0.3037 2.1949 12 1 6.6131 0.8417 0.0660 13 7 1.6614 2.0958 -1.2601 14 6 1.5679 3.5519 -1.0909 15 6 1.3048 4.1972 -2.4271 16 7 0.1315 4.4396 -2.9552 17 6 0.3844 5.0254 -4.1494 18 6 -0.6191 5.4930 -5.1276 19 6 -0.3401 6.0747 -6.3118 20 6 -1.4456 6.4226 -7.0578 21 6 -2.6233 6.1409 -6.4908 22 16 -2.3629 5.3840 -4.9248 23 7 1.6867 5.0946 -4.2766 24 8 2.2256 4.6237 -3.2973 25 1 -0.3634 -1.0221 0.1071 26 1 -0.3633 0.6037 0.8317 27 1 -0.3634 0.4184 -0.9386 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8056 -0.0527 2.9683 31 1 0.7974 1.7172 -1.6183 32 1 0.7523 3.7868 -0.4071 33 1 2.5048 3.9311 -0.6826 34 1 0.6701 6.2513 -6.6504 35 1 -1.3664 6.8926 -8.0269 36 1 -3.5890 6.3469 -6.9285 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571057494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:53 Heat of formation + Delta-G solvation = 101.634217 kcal Electronic energy + Delta-G solvation = -20220.374904 eV Core-core repulsion = 17027.694088 eV Total energy + Delta-G solvation = -3192.680816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.33866 -38.11146 -36.77666 -35.60548 -33.55708 -32.03925 -30.94760 -29.56422 -27.25297 -25.41678 -25.20264 -23.40445 -22.70237 -21.77544 -19.75752 -19.09757 -18.38966 -17.89786 -16.58231 -16.39343 -15.84707 -15.03321 -14.87664 -14.31236 -14.03330 -13.87463 -13.56978 -12.98510 -12.84556 -12.62635 -12.47229 -12.24267 -12.08974 -11.72645 -11.50968 -11.21300 -11.14413 -10.91209 -10.85857 -10.69299 -10.31843 -10.03714 -9.84898 -9.71299 -9.20812 -8.76655 -8.73716 -8.42512 -7.54818 -6.04450 -4.09573 0.31418 1.22735 1.39300 1.71713 2.14810 2.81148 3.01994 3.30002 3.37346 3.42321 3.48810 4.20048 4.40069 4.75042 4.92714 5.16891 5.22778 5.28866 5.29699 5.57899 5.65308 5.79359 5.93372 5.97978 6.09371 6.11291 6.11977 6.17706 6.35684 6.77566 6.94261 7.02501 7.29035 7.65834 7.80628 8.02581 8.23369 8.26362 8.52944 8.98088 9.56245 11.00935 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027840 B = 0.003243 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.491058 B = 8631.516166 C = 9425.376567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.222 3.778 4 H 0.010 0.990 5 C -0.501 4.501 6 H 0.065 0.935 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.680 5.680 14 C 0.151 3.849 15 C 0.222 3.778 16 N -0.486 5.486 17 C 0.228 3.772 18 C -0.121 4.121 19 C -0.099 4.099 20 C -0.138 4.138 21 C -0.216 4.216 22 S 0.185 5.815 23 N -0.374 5.374 24 O 0.092 5.908 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.103 0.897 30 H 0.261 0.739 31 H 0.327 0.673 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.054 10.007 -12.790 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.115 3.885 4 H 0.027 0.973 5 C -0.540 4.540 6 H 0.083 0.917 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.314 5.314 14 C 0.019 3.981 15 C 0.001 3.999 16 N -0.221 5.221 17 C -0.043 4.043 18 C -0.240 4.240 19 C -0.133 4.133 20 C -0.168 4.168 21 C -0.353 4.353 22 S 0.450 5.550 23 N -0.082 5.082 24 O 0.032 5.968 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.121 0.879 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -11.388 9.701 -12.391 19.425 hybrid contribution 1.154 0.473 -0.409 1.313 sum -10.234 10.174 -12.800 19.290 Atomic orbital electron populations 1.21900 0.99407 1.00005 0.99657 1.21776 0.91367 0.99830 1.03413 1.19235 0.95882 0.90197 0.83142 0.97253 1.21203 0.90907 1.37265 1.04600 0.91687 1.24948 0.98297 0.95354 0.95729 1.69863 1.34885 1.39073 1.09554 0.86520 0.85473 0.77413 0.78158 1.20767 1.21367 1.19793 1.60723 1.37053 0.99320 1.34339 1.20488 1.03972 0.90923 0.82700 1.29167 0.81380 0.93162 0.96174 1.72086 1.25018 1.18159 1.06797 1.22662 0.89148 1.00072 0.92413 1.21309 0.95490 1.10009 0.97183 1.20352 1.01197 0.99079 0.92691 1.20017 0.90930 1.03925 1.01944 1.26036 1.02692 1.06963 0.99655 1.84500 0.97229 1.57285 1.16002 1.74994 1.08674 1.17909 1.06592 1.85312 1.36283 1.54636 1.20607 0.94190 0.93688 0.94592 0.93826 0.87882 0.92919 0.85519 0.91158 0.86608 0.83550 0.83652 0.81246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.64 37.16 0.36 -2.44 16 2 C -0.13 -2.79 5.36 -26.73 -0.14 -2.93 16 3 C 0.22 5.10 2.02 -68.87 -0.14 4.96 16 4 H 0.01 0.24 7.85 -51.93 -0.41 -0.17 16 5 C -0.50 -12.95 8.57 -34.44 -0.30 -13.25 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.89 -24.23 11.29 55.43 0.63 -23.60 16 9 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.68 -13.48 6.26 -109.23 -0.68 -14.16 16 14 C 0.15 2.58 6.08 -4.98 -0.03 2.55 16 15 C 0.22 3.76 8.05 -12.97 -0.10 3.66 16 16 N -0.49 -8.27 11.58 -9.88 -0.11 -8.39 16 17 C 0.23 3.74 8.02 -156.04 -1.25 2.49 16 18 C -0.12 -1.65 6.44 -36.90 -0.24 -1.89 16 19 C -0.10 -1.13 10.05 -40.93 -0.41 -1.54 16 20 C -0.14 -1.22 10.16 -41.32 -0.42 -1.64 16 21 C -0.22 -1.82 11.23 29.15 0.33 -1.49 16 22 S 0.19 2.05 23.32 -107.50 -2.51 -0.46 16 23 N -0.37 -6.42 12.16 30.99 0.38 -6.04 16 24 O 0.09 1.61 11.29 18.00 0.20 1.81 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.60 6.66 -51.93 -0.35 0.26 16 28 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.10 2.59 5.94 -51.93 -0.31 2.28 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.33 6.12 6.63 -39.29 -0.26 5.86 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.12 1.99 7.94 -51.93 -0.41 1.58 16 34 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 325.54 15.07 4.91 4.91 Total: -1.00 -28.07 325.54 -8.89 -36.96 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.24 Total: 3.43 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -2.44 Total: -10.11 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.21 Total: -52.19 kcal Atomic # 8 Polarization: 1.61 SS G_CDS: 0.20 Total: 1.81 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.51 Total: -0.46 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.07 -8.89 -36.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571057494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.598 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds