Wall clock time and date at job start Tue Mar 31 2020 07:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46909 * 2 1 4 4 H 1.08994 * 109.47434 * 54.51790 * 3 2 1 5 5 C 1.50699 * 109.46805 * 174.51590 * 3 2 1 6 6 H 1.08001 * 120.00172 * 119.99948 * 5 3 2 7 7 C 1.37881 * 120.00056 * 300.00063 * 5 3 2 8 8 N 1.31513 * 119.99859 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00083 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47237 * 89.99871 * 9 7 5 11 11 H 1.48500 * 109.47350 * 209.99779 * 9 7 5 12 12 H 1.48499 * 109.47239 * 330.00033 * 9 7 5 13 13 N 1.46898 * 109.47453 * 294.51346 * 3 2 1 14 14 C 1.46894 * 111.00143 * 154.42677 * 13 3 2 15 15 C 1.50699 * 109.47319 * 174.78043 * 14 13 3 16 16 N 1.30936 * 126.39750 * 89.71666 * 15 14 13 17 17 C 1.35396 * 105.57517 * 179.86448 * 16 15 14 18 18 C 1.47729 * 126.44654 * 180.15158 * 17 16 15 19 19 C 1.34857 * 125.27055 * 179.97438 * 18 17 16 20 20 C 1.37823 * 114.72396 * 179.78574 * 19 18 17 21 21 C 1.33716 * 115.07330 * 0.50558 * 20 19 18 22 22 S 1.75868 * 109.74400 * 359.72394 * 21 20 19 23 23 N 1.31040 * 107.10122 * 0.40032 * 17 16 15 24 24 O 1.21285 * 110.04292 * 359.75056 * 23 17 16 25 25 H 1.09004 * 109.47241 * 185.98018 * 1 2 3 26 26 H 1.09003 * 109.47066 * 305.97791 * 1 2 3 27 27 H 1.08998 * 109.47505 * 65.97418 * 1 2 3 28 28 H 1.09002 * 109.46673 * 240.00273 * 2 1 3 29 29 H 1.08993 * 109.47242 * 120.00385 * 2 1 3 30 30 H 0.97000 * 119.99898 * 179.97438 * 8 7 5 31 31 H 1.00899 * 110.99836 * 30.47399 * 13 3 2 32 32 H 1.08995 * 109.47910 * 294.78773 * 14 13 3 33 33 H 1.09004 * 109.46840 * 54.78649 * 14 13 3 34 34 H 1.08002 * 122.64020 * 359.97438 * 19 18 17 35 35 H 1.08001 * 122.46381 * 180.22652 * 20 19 18 36 36 H 1.08000 * 125.13469 * 179.72842 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5987 1.9839 0.8368 5 6 3.5408 1.4447 0.1358 6 1 4.1523 1.8870 -0.6367 7 6 4.1333 0.8818 1.2463 8 7 3.3887 0.3436 2.1872 9 14 5.9937 0.8851 1.4149 10 1 6.4248 2.1201 2.1181 11 1 6.4221 -0.3037 2.1949 12 1 6.6131 0.8417 0.0660 13 7 1.6614 2.0958 -1.2601 14 6 1.5679 3.5519 -1.0909 15 6 1.3048 4.1972 -2.4271 16 7 0.1315 4.4396 -2.9552 17 6 0.3844 5.0254 -4.1494 18 6 -0.6191 5.4930 -5.1276 19 6 -0.3401 6.0747 -6.3118 20 6 -1.4456 6.4226 -7.0578 21 6 -2.6233 6.1409 -6.4908 22 16 -2.3629 5.3840 -4.9248 23 7 1.6867 5.0946 -4.2766 24 8 2.2256 4.6237 -3.2973 25 1 -0.3634 -1.0221 0.1071 26 1 -0.3633 0.6037 0.8317 27 1 -0.3634 0.4184 -0.9386 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8056 -0.0527 2.9683 31 1 0.7974 1.7172 -1.6183 32 1 0.7523 3.7868 -0.4071 33 1 2.5048 3.9311 -0.6826 34 1 0.6701 6.2513 -6.6504 35 1 -1.3664 6.8926 -8.0269 36 1 -3.5890 6.3469 -6.9285 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571057494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:53 Heat of formation + Delta-G solvation = 83.463756 kcal Electronic energy + Delta-G solvation = -20221.162834 eV Core-core repulsion = 17027.694088 eV Total energy + Delta-G solvation = -3193.468746 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.62481 -38.94113 -38.43669 -36.89022 -35.10021 -33.78899 -32.43888 -30.53535 -28.97168 -27.04123 -26.17780 -24.75477 -24.24871 -22.94631 -21.52125 -19.97505 -19.47408 -19.22260 -18.35242 -17.72209 -16.85347 -16.72795 -16.35432 -15.83448 -15.68873 -14.85954 -14.55811 -14.47436 -14.04851 -13.80243 -13.77961 -13.61453 -13.29760 -13.10463 -12.92937 -12.89498 -12.70895 -12.53191 -12.33366 -11.97180 -11.79052 -11.71826 -11.51478 -11.39579 -11.03017 -10.40750 -9.68147 -9.56198 -9.22496 -8.04809 -6.15958 -0.62439 0.12701 0.38107 0.94798 1.13933 1.45754 1.48478 1.57946 1.68826 1.84471 2.33306 2.47781 2.96905 3.22168 3.60298 3.83932 4.11658 4.21797 4.35668 4.40351 4.51966 4.55437 4.58474 4.65273 4.73032 4.78280 5.01164 5.10074 5.19997 5.22552 5.35523 5.36457 5.55296 5.76751 5.86717 6.26027 6.39632 6.77363 6.95776 6.96379 7.52861 8.98639 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027840 B = 0.003243 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.491058 B = 8631.516166 C = 9425.376567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C 0.229 3.771 4 H -0.010 1.010 5 C -0.515 4.515 6 H 0.055 0.945 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.684 5.684 14 C 0.157 3.843 15 C 0.222 3.778 16 N -0.493 5.493 17 C 0.233 3.767 18 C -0.173 4.173 19 C -0.084 4.084 20 C -0.146 4.146 21 C -0.184 4.184 22 S 0.169 5.831 23 N -0.391 5.391 24 O 0.077 5.923 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.261 0.739 31 H 0.334 0.666 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.147 0.853 35 H 0.180 0.820 36 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.496 10.940 -14.608 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C 0.122 3.878 4 H 0.008 0.992 5 C -0.554 4.554 6 H 0.073 0.927 7 C -0.183 4.183 8 N -0.557 5.557 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.318 5.318 14 C 0.026 3.974 15 C 0.001 3.999 16 N -0.228 5.228 17 C -0.038 4.038 18 C -0.291 4.291 19 C -0.120 4.120 20 C -0.175 4.175 21 C -0.321 4.321 22 S 0.433 5.567 23 N -0.101 5.101 24 O 0.020 5.980 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.153 0.847 32 H 0.104 0.896 33 H 0.130 0.870 34 H 0.164 0.836 35 H 0.197 0.803 36 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -12.820 10.635 -14.202 21.889 hybrid contribution 1.493 0.262 0.019 1.516 sum -11.326 10.897 -14.182 21.170 Atomic orbital electron populations 1.21769 0.96300 1.01271 1.00538 1.21612 0.94153 0.98759 1.01490 1.18988 0.94376 0.90749 0.83696 0.99201 1.21468 0.92537 1.37017 1.04339 0.92697 1.25590 1.01887 0.95239 0.95621 1.69976 1.36169 1.39649 1.09860 0.85649 0.81185 0.77430 0.77889 1.20218 1.21209 1.19848 1.60534 1.37737 1.00793 1.32775 1.20404 1.04435 0.89322 0.83250 1.28997 0.81557 0.93315 0.95982 1.72085 1.24888 1.18493 1.07332 1.23161 0.89455 0.98729 0.92408 1.21487 0.96228 1.13359 0.98059 1.20650 1.02301 0.97149 0.91948 1.20316 0.89961 1.04150 1.03070 1.26518 1.04236 1.03947 0.97438 1.84518 0.95698 1.58105 1.18367 1.74968 1.09236 1.19229 1.06712 1.85284 1.36602 1.55190 1.20906 0.92526 0.93838 0.92826 0.94587 0.90845 0.92998 0.84702 0.89649 0.86989 0.83561 0.80320 0.77496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.64 71.98 0.69 -4.36 16 2 C -0.12 -5.44 5.36 30.59 0.16 -5.28 16 3 C 0.23 10.68 2.02 44.17 0.09 10.77 16 4 H -0.01 -0.48 7.85 -2.39 -0.02 -0.50 16 5 C -0.51 -27.04 8.57 25.60 0.22 -26.82 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.02 0.82 5.29 84.66 0.45 1.27 16 8 N -0.92 -50.37 11.29 21.45 0.24 -50.13 16 9 Si 0.95 42.76 29.54 68.60 2.03 44.79 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 13 N -0.68 -27.19 6.26 -499.49 -3.12 -30.32 16 14 C 0.16 5.42 6.08 85.56 0.52 5.94 16 15 C 0.22 7.60 8.05 88.35 0.71 8.32 16 16 N -0.49 -16.79 11.58 -302.28 -3.50 -20.29 16 17 C 0.23 7.66 8.02 136.95 1.10 8.76 16 18 C -0.17 -4.58 6.44 24.00 0.15 -4.42 16 19 C -0.08 -1.79 10.05 21.39 0.22 -1.57 16 20 C -0.15 -2.07 10.16 21.14 0.21 -1.85 16 21 C -0.18 -2.39 11.23 66.79 0.75 -1.64 16 22 S 0.17 3.45 23.32 -56.49 -1.32 2.13 16 23 N -0.39 -13.57 12.16 -58.79 -0.72 -14.29 16 24 O 0.08 2.73 11.29 74.49 0.84 3.57 16 25 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.71 6.66 -2.39 -0.02 1.70 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.07 3.76 5.94 -2.39 -0.01 3.74 16 30 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 31 H 0.33 12.36 6.63 -89.69 -0.60 11.76 16 32 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.11 3.94 7.94 -2.39 -0.02 3.92 16 34 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.21 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -61.06 325.54 0.25 -60.81 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.52 Total: 14.62 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.28 Total: -10.90 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -7.10 Total: -115.02 kcal Atomic # 8 Polarization: 2.73 SS G_CDS: 0.84 Total: 3.57 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.32 Total: 2.13 kcal Total: -61.06 0.25 -60.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571057494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.278 kcal (2) G-P(sol) polarization free energy of solvation -61.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds